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Insights into the Maize Pan-Genome and Pan-Transcriptome
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/gepi.20310openalex-snapshot
A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms
inferredcites →https://doi.org/10.1002/gepi.20430openalex-snapshot
Avoiding the high Bonferroni penalty in genome‐wide association studies
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OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy
inferredcites →https://doi.org/10.1016/j.gde.2009.06.001openalex-snapshot
Small RNAs and developmental timing in plants
inferredcites →https://doi.org/10.1016/j.mib.2008.09.006openalex-snapshot
Comparative genomics: the bacterial pan-genome
inferredcites →https://doi.org/10.1016/j.pbi.2007.02.001openalex-snapshot
Transposable elements and the plant pan-genomes
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1017/s0016672310000509openalex-snapshot
MADS-box genes of maize: frequent targets of selection during domestication
inferredcites →https://doi.org/10.1038/nature07723openalex-snapshot
The Sorghum bicolor genome and the diversification of grasses
inferredcites →https://doi.org/10.1038/nature10414openalex-snapshot
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
inferredcites →https://doi.org/10.1038/ng.2313openalex-snapshot
Maize HapMap2 identifies extant variation from a genome in flux
inferredcites →https://doi.org/10.1038/ng.546openalex-snapshot
Mixed linear model approach adapted for genome-wide association studies
inferredcites →https://doi.org/10.1038/ng.684openalex-snapshot
Genome-wide patterns of genetic variation among elite maize inbred lines
inferredcites →https://doi.org/10.1038/ng.911openalex-snapshot
Whole-genome sequencing of multiple Arabidopsis thaliana populations
inferredcites →https://doi.org/10.1038/ng0393-266openalex-snapshot
Identification of protein coding regions by database similarity search
inferredcites →https://doi.org/10.1038/ng1702openalex-snapshot
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
inferredcites →https://doi.org/10.1038/ng2001openalex-snapshot
The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
inferredcites →https://doi.org/10.1038/nprot.2009.86openalex-snapshot
Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
inferredcites →https://doi.org/10.1073/pnas.0503927102openalex-snapshot
microRNA172 down-regulates glossy15 to promote vegetative phase change in maize
inferredcites →https://doi.org/10.1073/pnas.0506758102openalex-snapshot
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae : Implications for the microbial “pan-genome”
inferredcites →https://doi.org/10.1073/pnas.0510430103openalex-snapshot
All possible modes of gene action are observed in a global comparison of gene expression in a maize F 1 hybrid and its inbred parents
inferredcites →https://doi.org/10.1073/pnas.0704145104openalex-snapshot
Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize
inferredcites →https://doi.org/10.1073/pnas.0900992106openalex-snapshot
Genomewide SNP variation reveals relationships among landraces and modern varieties of rice
inferredcites →https://doi.org/10.1073/pnas.1101368108openalex-snapshot
Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
inferredcites →https://doi.org/10.1073/pnas.1220766110openalex-snapshot
Aluminum tolerance in maize is associated with higher MATE1 gene copy number
inferredcites →https://doi.org/10.1073/pnas.81.24.8014openalex-snapshot
Ribosomal DNA spacer-length polymorphisms in barley: mendelian inheritance, chromosomal location, and population dynamics.
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/17.9.847openalex-snapshot
InterProScan – an integration platform for the signature-recognition methods in InterPro
inferredcites →https://doi.org/10.1093/bioinformatics/bti282openalex-snapshot
PowerMarker: an integrated analysis environment for genetic marker analysis
inferredcites →https://doi.org/10.1093/bioinformatics/bti310openalex-snapshot
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btm098openalex-snapshot
UniRef: comprehensive and non-redundant UniProt reference clusters
inferredcites →https://doi.org/10.1093/bioinformatics/btp120openalex-snapshot
TopHat: discovering splice junctions with RNA-Seq
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts094openalex-snapshot
Oases:robustde novoRNA-seq assembly across the dynamic range of expression levels
inferredcites →https://doi.org/10.1093/bioinformatics/bts444openalex-snapshot
GAPIT: genome association and prediction integrated tool
inferredcites →https://doi.org/10.1093/jxb/err129openalex-snapshot
ZCN8 encodes a potential orthologue of Arabidopsis FT florigen that integrates both endogenous and photoperiod flowering signals in maize
inferredcites →https://doi.org/10.1093/nar/gkl976openalex-snapshot
The TIGR Rice Genome Annotation Resource: improvements and new features
inferredcites →https://doi.org/10.1093/nar/gkm1041openalex-snapshot
PlantGDB: a resource for comparative plant genomics
inferredcites →https://doi.org/10.1093/nar/gkp1018openalex-snapshot
The Gene Ontology in 2010: extensions and refinements
inferredcites →https://doi.org/10.1101/gad.10.23.3018openalex-snapshot
Glossy15, an APETALA2-like gene from maize that regulates leaf epidermal cell identity.
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.080200.108openalex-snapshot
Sequencing of natural strains of Arabidopsis thaliana with short reads
inferredcites →https://doi.org/10.1101/gr.109165.110openalex-snapshot
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1104/pp.105.061762openalex-snapshot
TaVRT-2, a Member of the StMADS-11 Clade of Flowering Repressors, Is Regulated by Vernalization and Photoperiod in Wheat
inferredcites →https://doi.org/10.1105/tpc.104.025627openalex-snapshot
Evolution of DNA Sequence Nonhomologies among Maize Inbreds
inferredcites →https://doi.org/10.1105/tpc.108.060376openalex-snapshot
Comparative Analysis between Homoeologous Genome Segments ofBrassica napusand Its Progenitor Species Reveals Extensive Sequence-Level Divergence
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04527.xopenalex-snapshot
Genome‐wide atlas of transcription during maize development
inferredcites →https://doi.org/10.1111/j.1399-3054.2008.01104.xopenalex-snapshot
PnMADS1, encoding an StMADS11‐clade protein, acts as a repressor of flowering in Pharbitis nil
inferredcites →https://doi.org/10.1111/j.1744-7909.2012.01128.xopenalex-snapshot
The Genetic Architecture of Flowering Time and Photoperiod Sensitivity in Maize as Revealed by QTL Review and Meta Analysis
inferredcites →https://doi.org/10.1126/science.1138632openalex-snapshot
Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana
inferredcites →https://doi.org/10.1126/science.1174276openalex-snapshot
The Genetic Architecture of Maize Flowering Time
inferredcites →https://doi.org/10.1126/science.1177837openalex-snapshot
A First-Generation Haplotype Map of Maize
inferredcites →https://doi.org/10.1126/science.1178534openalex-snapshot
The B73 Maize Genome: Complexity, Diversity, and Dynamics
inferredcites →https://doi.org/10.1186/1471-2164-10-45openalex-snapshot
An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.
inferredcites →https://doi.org/10.1186/1471-2164-11-724openalex-snapshot
Accounting for multiple comparisons in a genome-wide association study (GWAS)
inferredcites →https://doi.org/10.1186/1471-2164-13-179openalex-snapshot
Unique core genomes of the bacterial family vibrionaceae: insights into niche adaptation and speciation
inferredcites →https://doi.org/10.1186/gb-2007-8-6-r103openalex-snapshot
Characterization and modeling of the Haemophilus influenzae core and supragenomes based on the complete genomic sequences of Rd and 12 clinical nontypeable strains
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.1186/gb-2009-10-5-107openalex-snapshot
The 1001 Genomes Project for Arabidopsis thaliana
inferredcites →https://doi.org/10.1371/journal.pgen.0020190openalex-snapshot
Population Structure and Eigenanalysis
inferredcites →https://doi.org/10.1371/journal.pgen.1000734openalex-snapshot
Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
inferredcites →https://doi.org/10.1371/journal.pgen.1002012openalex-snapshot
MiRNA Control of Vegetative Phase Change in Trees
inferredcites →https://doi.org/10.1371/journal.pgen.1002372openalex-snapshot
Heritable Epigenetic Variation among Maize Inbreds
inferredcites →https://doi.org/10.1371/journal.pone.0000383openalex-snapshot
Assessing Performance of Orthology Detection Strategies Applied to Eukaryotic Genomes
inferredcites →https://doi.org/10.1371/journal.pone.0033071openalex-snapshot
Maize (Zea mays L.) Genome Diversity as Revealed by RNA-Sequencing
inferredcites →https://doi.org/10.1371/journal.pone.0046596openalex-snapshot
PICARA, an Analytical Pipeline Providing Probabilistic Inference about A Priori Candidates Genes Underlying Genome-Wide Association QTL in Plants
inferredcites →https://doi.org/10.1371/journal.pone.0061005openalex-snapshot
Maize Gene Atlas Developed by RNA Sequencing and Comparative Evaluation of Transcriptomes Based on RNA Sequencing and Microarrays
inferredcites →https://doi.org/10.1534/genetics.104.032375openalex-snapshot
Genetic Architecture of Flowering Time in Maize As Inferred From Quantitative Trait Loci Meta-analysis and Synteny Conservation With the Rice Genome
inferredcites →https://doi.org/10.1534/genetics.106.060699openalex-snapshot
Cis-transcriptional Variation in Maize Inbred Lines B73 and Mo17 Leads to Additive Expression Patterns in the F1 Hybrid
inferredcites →https://doi.org/10.1534/genetics.107.072702openalex-snapshot
Natural Variation for Alleles Under Epigenetic Control by the Maize ChromomethylaseZmet2
inferredcites →https://doi.org/10.1534/genetics.107.076497openalex-snapshot
Linkage Mapping of Domestication Loci in a Large Maize–Teosinte Backcross Resource
inferredcites →https://doi.org/10.2135/1974.seventygenerationsopenalex-snapshot
Seventy Generations of Selection for Oil and Protein in Maize
inferredcites →https://doi.org/10.2135/cropsci1987.0011183x002700060005xopenalex-snapshot
Twenty Cycles of Divergent Mass Selection for Seed Size in Corn1
inferredcites →https://doi.org/10.2135/cropsci2002.0325openalex-snapshot
Twenty-Four Cycles of Mass Selection for Prolificacy in the Golden Glow Maize Population
inferredcites →https://doi.org/10.2135/cropsci2005.08-0253openalex-snapshot
Registration of KLS_30 and KSS_30 Populations of Maize
inferredcites →https://doi.org/10.2135/cropsci2010.03.0178openalex-snapshot
Genetic Diversity of a Maize Association Population with Restricted Phenology
inferredcites →https://doi.org/10.3168/jds.2007-0980openalex-snapshot
Efficient Methods to Compute Genomic Predictions
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4588303openalex-extracted
Identification and Validation of Genomic Regions Associated with the Traits Contributing to Lodging Tolerance in Wheat (Triticum Aestivum L.)
inferred← citeshttps://doi.org/10.1002/9781119312994.apr0664openalex-snapshot
Plant Pangenome: Impacts on Phenotypes and Evolution
inferred← citeshttps://doi.org/10.1002/9781119745686.ch9openalex-snapshot
Recent Advances and Applicability of GBS, GWAS, and GS in Maize
inferred← citeshttps://doi.org/10.1002/bies.202100109openalex-snapshot
GWAS for genetics of complex quantitative traits: Genome to pangenome and SNPs to SVs and k‐mers
inferred← citeshttps://doi.org/10.1002/csc2.70361openalex-snapshot
Impact of increased population size and three reference genomes on the development of linkage maps in alfalfa
inferred← citeshttps://doi.org/10.1002/essoar.10508340.1openalex-snapshot
Modeling canopy architecture traits using UAS-acquired LiDAR features in diverse maize varieties
inferred← citeshttps://doi.org/10.1002/essoar.10508831.1openalex-snapshot
Modeling canopy architecture traits using UAS-acquired LiDAR features in diverse maize varieties
inferred← citeshttps://doi.org/10.1002/pld3.223openalex-snapshot
Unoccupied aerial system enabled functional modeling of maize height reveals dynamic expression of loci
inferred← citeshttps://doi.org/10.1002/pld3.70189openalex-snapshot
Zea mays Drought‐Overly Sensitive1/TUBA4 Is Wilty3 , and Transcriptome Co‐Expression Analysis of Shoot Meristem Mutant Tissues Reveals Wilty2/TUB6:Wi3 Interactions Associated With Stem Vascular Bundle Development
inferred← citeshttps://doi.org/10.1002/tpg2.20046openalex-snapshot
Pan‐genome: A promising resource for noncoding RNA discovery in plants
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Systems biology for crop improvement
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Sequencing the USDA core soybean collection reveals gene loss during domestication and breeding
inferred← citeshttps://doi.org/10.1002/tpg2.20114openalex-snapshot
Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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Genetic control of kernel compositional variation in a maize diversity panel
inferred← citeshttps://doi.org/10.1002/tpg2.20177openalex-snapshot
Pangenomics in crop improvement—from coding structural variations to finding regulatory variants with pangenome graphs
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Transcriptome‐wide association and prediction for carotenoids and tocochromanols in fresh sweet corn kernels
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Relative importance of genotype, gene expression, and DNA methylation on complex traits in perennial ryegrass
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Leveraging prior biological knowledge improves prediction of tocochromanols in maize grain
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A view of the pan‐genome of domesticated Cowpea ( Vigna unguiculata [L.] Walp.)
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Whole‐genome versus per‐chromosome targeted recombination: Simulations and predicted gains in maize with an integer programming model
inferred← citeshttps://doi.org/10.1002/tpg2.20489openalex-snapshot
Integrating GWAS with a gene co‐expression network better prioritizes candidate genes associated with root metaxylem phenes in maize
inferred← citeshttps://doi.org/10.1002/tpg2.70010openalex-snapshot
A pangenome reveals LTR repeat dynamics as a major driver of genome evolution in Chenopodium
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Advances in Sequencing and Resequencing in Crop Plants
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Genome Size and the Role of Transposable Elements
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Updates on Genomic Resources for Crop Improvement
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Next-Generation Sequencing Technologies: Approaches and Applications for Crop Improvement
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Investigating Pangenome Graphs Using Wheat Panache
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Pan-Genome Storage and Analysis Techniques
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The Carrot Nuclear Genome and Comparative Analysis
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Future Prospects and Challenges
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Perspectives of Advanced Genetics and Genomics Approaches to Exploit Solanum Wild Crop Relatives for Breeding
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Computational Strategies for Eukaryotic Pangenome Analyses
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Overview and Application of Soybean Genomics Study
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Resistance to Abiotic Stress: Theory and Applications in Maize Breeding
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Resistance to Biotic Stress: Theory and Applications in Maize Breeding
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Moringa Functional Genomics: Implications of Long Read Sequencing Technologies
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Pseudomonas aeruginosa Pangenome: Core and Accessory Genes of a Highly Resourceful Opportunistic Pathogen
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The Intervention of Multi-Omics Approaches for Developing Abiotic Stress Resistance in Cotton Crop Under Climate Change
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Genome Diversity in Maize
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Maize Improvement Using Recent Omics Approaches
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Applying Genomics Resources to Accelerate the Development of Climate Resilient Crops
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Orchestration of Omics Technologies for Crop Improvement
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Transcriptome-Based Prediction Breeding
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Omics-Based Nanopharmacy: Powerful Tools Toward Precision Medicine
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Impact of Climate Change on Agricultural Ecosystem
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Genome Evolution and Polyploidy
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Structural Variation and the Soybean Genome
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Future Prospects for Chickpea Research
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Underutilised and Neglected Crops: Next Generation Sequencing Approaches for Crop Improvement and Better Food Security
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Using Genomics to Adapt Crops to Climate Change
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Barley Genome Sequencing and Assembly—A First Version Reference Sequence
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Draft Assembly of the F2 European Maize Genome Sequence and Its Comparison to the B73 Genome Sequence: A Characterization of Genotype-Specific Regions
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Rapid, Affordable, and Scalable Genotyping for Germplasm Exploration in Maize
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The Sorghum Genome: Current Status and Future Prospects
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Pangenomes, Super-Pangenomes and Beyond
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Does Modern Plant Breeding Techniques Increase Crop Stability Performance?
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Future Perspectives in the Omics Era for Tea Breeding
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ResDeepGS: A Deep Learning-Based Method for Crop Phenotype Prediction
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Genomics, Pan-Genomics, and Super Pan-Genomics of Major Oilseed Crops
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Future Prospects: High-Altitude Crop Improvement via Genomics
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Large effect QTL explain natural phenotypic variation for the developmental timing of vegetative phase change in maize (Zea mays L.)
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Modeling copy number variation in the genomic prediction of maize hybrids
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Connecting genome structural variation with complex traits in crop plants
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Prospects of pan-genomics in barley
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From markers to genome-based breeding in wheat
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Technological advances in maize breeding: past, present and future
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Dynamic patterns of circular and linear RNAs in maize hybrid and parental lines
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Identifying barley pan-genome sequence anchors using genetic mapping and machine learning
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Characterizing introgression-by-environment interactions using maize near isogenic lines
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Sorghum breeding in the genomic era: opportunities and challenges
inferred← citeshttps://doi.org/10.1007/s00122-021-03820-3openalex-snapshot
Crop breeding for a changing climate: integrating phenomics and genomics with bioinformatics
inferred← citeshttps://doi.org/10.1007/s00122-021-04018-3openalex-snapshot
Meta-QTLs, ortho-meta-QTLs and candidate genes for grain yield and associated traits in wheat (Triticum aestivum L.)
inferred← citeshttps://doi.org/10.1007/s00122-023-04265-6openalex-snapshot
A comparison of methods for training population optimization in genomic selection
inferred← citeshttps://doi.org/10.1007/s00122-023-04387-xopenalex-snapshot
Fine mapping of a Fusarium crown rot resistant locus on chromosome arm 6HL in barley by exploiting near isogenic lines, transcriptome profiling, and a large near isogenic line-derived population
inferred← citeshttps://doi.org/10.1007/s00122-023-04442-7openalex-snapshot
Hybrid performance evaluation and genome-wide association analysis of root system architecture in a maize association population
inferred← citeshttps://doi.org/10.1007/s00122-025-05020-9openalex-snapshot
Identification of new genomic loci for seed protein and oil content in the soybean pangenome using genome-wide association and haplotype analyses
inferred← citeshttps://doi.org/10.1007/s00122-026-05201-0openalex-snapshot
Accessing crop genetic diversity via pangenomics
inferred← citeshttps://doi.org/10.1007/s00122-026-05285-8openalex-snapshot
Unveiling the interactions between design optimization, modeling strategies, and spatial analysis in genomic selection
inferred← citeshttps://doi.org/10.1007/s00239-024-10198-5openalex-snapshot
Unveiling the Genomic Symphony: Identification Cultivar-Specific Genes and Enhanced Insights on Sweet Sorghum Genomes Through Comprehensive superTranscriptomic Analysis
inferred← citeshttps://doi.org/10.1007/s00299-018-2262-0openalex-snapshot
Genome-wide identification and comparative analysis of phosphate starvation-responsive transcription factors in maize and three other gramineous plants
inferred← citeshttps://doi.org/10.1007/s00299-023-03006-9openalex-snapshot
Identification and validation of new MADS-box homologous genes in 3010 rice pan-genome
inferred← citeshttps://doi.org/10.1007/s00425-020-03465-4openalex-snapshot
Breeding and biotechnological interventions for trait improvement: status and prospects
inferred← citeshttps://doi.org/10.1007/s00438-021-01831-9openalex-snapshot
Population-tailored mock genome enables genomic studies in species without a reference genome
inferred← citeshttps://doi.org/10.1007/s10142-019-00707-xopenalex-snapshot
Characterization of natural genetic variation identifies multiple genes involved in salt tolerance in maize
inferred← citeshttps://doi.org/10.1007/s10142-025-01633-xopenalex-snapshot
Pan-omics insights into abiotic stress responses: bridging functional genomics and precision crop breeding
inferred← citeshttps://doi.org/10.1007/s10529-015-1836-yopenalex-snapshot
Whole genome sequences in pulse crops: a global community resource to expedite translational genomics and knowledge-based crop improvement
inferred← citeshttps://doi.org/10.1007/s10681-020-02742-3openalex-snapshot
Novel insights of maize structural feature in China
inferred← citeshttps://doi.org/10.1007/s10722-023-01669-7openalex-snapshot
Focused identification of germplasm strategy (FIGS): a strategic approach for trait-enhanced pre-breeding
inferred← citeshttps://doi.org/10.1007/s11032-014-0179-zopenalex-snapshot
Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population
inferred← citeshttps://doi.org/10.1007/s11032-017-0622-zopenalex-snapshot
Development of a maize 55 K SNP array with improved genome coverage for molecular breeding
inferred← citeshttps://doi.org/10.1007/s11033-019-04896-3openalex-snapshot
Maize transcriptomic repertoires respond to gibberellin stimulation
inferred← citeshttps://doi.org/10.1007/s11033-020-05891-9openalex-snapshot
Prospects of next generation sequencing in lentil breeding
inferred← citeshttps://doi.org/10.1007/s11103-020-01104-wopenalex-snapshot
Current status and impending progress for cassava structural genomics
inferred← citeshttps://doi.org/10.1007/s11105-016-1001-3openalex-snapshot
Genome-Wide Discovery of Tissue-Specific Genes in Maize
inferred← citeshttps://doi.org/10.1007/s11240-026-03409-yopenalex-snapshot
Low hanging fruit: harvesting the potential of DNA-free genome editing in red raspberry (Rubus idaeus)
inferred← citeshttps://doi.org/10.1007/s11262-018-1569-9openalex-snapshot
Barley stripe mosaic virus (BSMV) as a virus-induced gene silencing vector in maize seedlings
inferred← citeshttps://doi.org/10.1007/s11427-018-9431-8openalex-snapshot
A new high-quality genome sequence in soybean
inferred← citeshttps://doi.org/10.1007/s11427-019-9551-7openalex-snapshot
Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data
inferred← citeshttps://doi.org/10.1007/s11427-025-3022-6openalex-snapshot
Decades’ progress and prospects on maize functional genomics and molecular breeding
inferred← citeshttps://doi.org/10.1007/s12033-026-01604-yopenalex-snapshot
Empowering Plant Biotechnology Research: Super-Pangenomes as a Novel Arsenal for Crop Breeding and Improvement
inferred← citeshttps://doi.org/10.1007/s12230-015-9486-0openalex-snapshot
A Toolbox of Potato Genetic and Genomic Resources
inferred← citeshttps://doi.org/10.1007/s12892-025-00329-9openalex-snapshot
Crop wild relatives of major cereals and millets: an overview
inferred← citeshttps://doi.org/10.1007/s42514-021-00081-wopenalex-snapshot
Applications and challenges of high performance computing in genomics
inferred← citeshttps://doi.org/10.1007/s42535-025-01227-9openalex-snapshot
Integration of different omics technologies for agro- environmental sustainability
inferred← citeshttps://doi.org/10.1007/s42976-022-00308-8openalex-snapshot
Unveiling the characteristics of popcorn by genome re-sequencing and integrating the ESTs and proteome data
inferred← citeshttps://doi.org/10.1007/s44412-025-00002-6openalex-snapshot
Wheat genomics frontiers for gene discovery and breeding applications
inferred← citeshttps://doi.org/10.1016/b978-0-12-817076-2.00014-7openalex-snapshot
Pan-genomics of plants and its applications
inferred← citeshttps://doi.org/10.1016/b978-0-12-822563-9.00176-1openalex-snapshot
Brachypodium Distachyon
inferred← citeshttps://doi.org/10.1016/b978-0-323-89905-5.00016-1openalex-snapshot
State of the art of omics technologies in horticultural crops
inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00112-9openalex-snapshot
Genetic Basis of Adaptation
inferred← citeshttps://doi.org/10.1016/b978-0-443-19110-7.00006-9openalex-snapshot
Transcriptomics for modern biotechnology
inferred← citeshttps://doi.org/10.1016/b978-0-443-19409-2.00008-9openalex-snapshot
Lentil genome sequencing: Establishing a comprehensive platform for molecular breeding
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00001-7openalex-snapshot
Technological development for analyzing and constructing plant pangenomes
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00002-9openalex-snapshot
Bioinformatics tools for plant pangenomics: Analysis, assembly, and visualization
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00003-0openalex-snapshot
Pangenomics-assisted breeding for better yield and quality in food crops
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00004-2openalex-snapshot
Pangenomics for accelerating crop breeding
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00015-7openalex-snapshot
Pangenomics for developing viral disease-resistant plants: Harnessing synergenetic pangenomics for advanced viral disease resistance in crops
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00018-2openalex-snapshot
Pangenomes empower the investigation of biological adaptations
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00019-4openalex-snapshot
Pangenomics for studying plant population genetics
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00020-0openalex-snapshot
Utilization of pangenomics for the molecular dissection of crop traits
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00022-4openalex-snapshot
Pangenomics for studying plant secondary metabolism
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00024-8openalex-snapshot
Molecular insights into plant-pest interactions based on pangenomics and functional genomics
inferred← citeshttps://doi.org/10.1016/b978-0-443-26791-8.00026-1openalex-snapshot
Breeding strategies involving pangenomics and functional genomics for developing disease-resistant cereal crops
inferred← citeshttps://doi.org/10.1016/b978-0-443-27424-4.00011-2openalex-snapshot
Genomic breeding empowered by next-generation sequencing and generative artificial intelligence for multiple abiotic stress tolerance in plants
inferred← citeshttps://doi.org/10.1016/b978-0-443-33026-1.00007-4openalex-snapshot
Integration of omics technologies in plant sciences
inferred← citeshttps://doi.org/10.1016/b978-0-443-36457-0.00009-2openalex-snapshot
Improving wheat and maize genotypes through omics approaches
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The polyploid origins of crop genomes and their implications: A case study in legumes
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Clonorchis sinensis and Clonorchiasis: The Relevance of Exploring Genetic Variation
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Recent advances in plant translational genomics for crop improvement
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The graphical barley pangenome reveals micro- and macro-scale genetic variation
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Unraveling gene function in agricultural species using gene co-expression networks
inferred← citeshttps://doi.org/10.1016/j.cell.2020.05.023openalex-snapshot
Pan-Genome of Wild and Cultivated Soybeans
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Delineating a locus conferring Fusarium crown rot resistance on chromosome arm 1HL in barley by developing and analysing a large population derived from near isogenic lines
inferred← citeshttps://doi.org/10.1016/j.cj.2021.04.003openalex-snapshot
Oryza pan-genomics: A new foundation for future rice research and improvement
inferred← citeshttps://doi.org/10.1016/j.cj.2021.07.008openalex-snapshot
Genetic architecture of maize yield traits dissected by QTL mapping and GWAS in maize
inferred← citeshttps://doi.org/10.1016/j.cj.2024.10.007openalex-snapshot
Omics big data for crop improvement: Opportunities and challenges
inferred← citeshttps://doi.org/10.1016/j.cj.2026.03.003openalex-snapshot
An efficient machine-learning framework for genomic selection of optimal crosses in soybean germplasm population
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Getting back to the grass roots: harnessing specialized metabolites for improved crop stress resilience
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Advances in genomics for adapting crops to climate change
inferred← citeshttps://doi.org/10.1016/j.cpb.2020.100185openalex-snapshot
The lowest hanging fruit: Beneficial gene knockouts in past, present, and future crop evolution
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Using next-generation sequencing approach for discovery and characterization of plant molecular markers
inferred← citeshttps://doi.org/10.1016/j.cpb.2026.100648openalex-snapshot
Plant pan-transcriptomics: Integrating structural genomics, isoform diversity, and systems genetics for next-generation breeding
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
inferred← citeshttps://doi.org/10.1016/j.eja.2023.127073openalex-snapshot
Identification and expression analysis of genomic regions associated with the traits contributing to lodging tolerance in wheat (Triticum aestivum L.)
inferred← citeshttps://doi.org/10.1016/j.fcr.2023.109168openalex-snapshot
Unveiling the phenotypic landscape of stalk lodging resistance in diverse maize hybrids
inferred← citeshttps://doi.org/10.1016/j.forsciint.2025.112370openalex-snapshot
Perspectives and opportunities in forensic human, animal, and plant integrative genomics in the Pangenome era
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Genome size diversity in angiosperms and its influence on gene space
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NASGP: An efficient and interpretable neural architecture search framework for plant genomic prediction
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101241openalex-snapshot
ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
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Developing pangenomes for large and complex plant genomes and their representation formats
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Biotechnological approaches to dissect climate-resilient traits in millets and their application in crop improvement
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Plant pan-genomics: recent advances, new challenges, and roads ahead
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Pan-transcriptome analysis provides insights into resistance and fruit quality breeding of pear (Pyrus pyrifolia)
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Integrating multi-omics data for crop improvement
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Current progress and challenges in crop genetic transformation
inferred← citeshttps://doi.org/10.1016/j.jplph.2025.154584openalex-snapshot
Metabolic modelling: Insights into the machine room of plant metabolism
inferred← citeshttps://doi.org/10.1016/j.lwt.2022.113400openalex-snapshot
Variability in changes of acrylamide precursors during nixtamalization for masa production
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Crop Breeding Chips and Genotyping Platforms: Progress, Challenges, and Perspectives
inferred← citeshttps://doi.org/10.1016/j.molp.2018.12.015openalex-snapshot
Dynamic Patterns of Gene Expression Additivity and Regulatory Variation throughout Maize Development
inferred← citeshttps://doi.org/10.1016/j.molp.2018.12.016openalex-snapshot
Exploring and Exploiting Pan-genomics for Crop Improvement
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A Collinearity-Incorporating Homology Inference Strategy for Connecting Emerging Assemblies in the Triticeae Tribe as a Pilot Practice in the Plant Pangenomic Era
inferred← citeshttps://doi.org/10.1016/j.molp.2021.03.010openalex-snapshot
An integrated framework reinstating the environmental dimension for GWAS and genomic selection in crops
inferred← citeshttps://doi.org/10.1016/j.molp.2021.08.005openalex-snapshot
Pan-genome of Raphanus highlights genetic variation and introgression among domesticated, wild, and weedy radishes
inferred← citeshttps://doi.org/10.1016/j.molp.2022.01.003openalex-snapshot
Phased, chromosome-scale genome assemblies of tetraploid potato reveal a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity
inferred← citeshttps://doi.org/10.1016/j.molp.2022.12.009openalex-snapshot
Plant pan-genomics and its applications
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Maize2035: A decadal vision for intelligent maize breeding
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Comparative transcriptomics of CAZy enzymes in white- and brown-rot agaricomycetes: Evolutionary insights into lignocellulose degradation and the relevance of GH16 glycoside hydrolase functional divergence
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Harnessing super pan-genomics for accelerated crop improvement
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Exploring structural variants in environmentally sensitive gene families
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The big five of the monocot genomes
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Network approaches for plant phylogenomic synteny analysis
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The rise and fall of genes: origins and functions of plant pathogen pangenomes
inferred← citeshttps://doi.org/10.1016/j.pbi.2024.102670openalex-snapshot
Evolving best practices for transcriptome-wide association studies accelerate discovery of gene-phenotype links
inferred← citeshttps://doi.org/10.1016/j.plantsci.2015.07.010openalex-snapshot
Next generation breeding
inferred← citeshttps://doi.org/10.1016/j.plantsci.2023.111778openalex-snapshot
Genome-wide presence/absence variation discovery and its application in Peach (Prunus persica)
inferred← citeshttps://doi.org/10.1016/j.plantsci.2025.112534openalex-snapshot
Shaping the future: Unravelling regulators modulating plant architecture for next-generation crops
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Integrated transcriptome, proteome and metabolome analyses revealed secondary metabolites and auxiliary carbohydrate metabolism augmenting drought tolerance in rice
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Wheat omics: Classical breeding to new breeding technologies
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Integrating genomic technologies with artificial intelligence, CRISPR editing, and high-throughput phenotyping for engineering disease-resistant crops
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Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications
inferred← citeshttps://doi.org/10.1016/j.tplants.2015.10.018openalex-snapshot
Analytical and Decision Support Tools for Genomics-Assisted Breeding
inferred← citeshttps://doi.org/10.1016/j.tplants.2019.10.012openalex-snapshot
Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement
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Designing Future Crops: Genomics-Assisted Breeding Comes of Age
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The Past, Present, and Future of Maize Improvement: Domestication, Genomics, and Functional Genomic Routes toward Crop Enhancement
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100791openalex-snapshot
A graph-based pan-genome of Brassica oleracea provides new insights into its domestication and morphotype diversification
inferred← citeshttps://doi.org/10.1016/j.xplc.2024.100816openalex-snapshot
Weed biology and management in the multi-omics era: Progress and perspectives
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