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CloudBLAST: Combining MapReduce and Virtualization on Distributed Resources for Bioinformatics Applications

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cpe.906openalex-snapshot
GridBLAST: a Globus-based high-throughput implementation of BLAST in a Grid computing framework
inferredcites →https://doi.org/10.1006/jmbi.1990.9999openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1007/11942634openalex-snapshot
Frontiers of High Performance Computing and Networking – ISPA 2006 Workshops
inferredcites →https://doi.org/10.1007/11942634_41openalex-snapshot
Making Wide-Area, Multi-site MPI Feasible Using Xen VM
inferredcites →https://doi.org/10.1007/978-3-540-75755-9openalex-snapshot
Applied Parallel Computing. State of the Art in Scientific Computing
inferredcites →https://doi.org/10.1007/978-3-540-75755-9_96openalex-snapshot
Applications of Grid Computing in Genetics and Proteomics
inferredcites →https://doi.org/10.1017/cbo9780511790492openalex-snapshot
Biological Sequence Analysis
inferredcites →https://doi.org/10.1089/10665270050081478openalex-snapshot
A Greedy Algorithm for Aligning DNA Sequences
inferredcites →https://doi.org/10.1109/ccgrid.2003.1199412openalex-snapshot
Recovering internet symmetry in distributed computing
inferredcites →https://doi.org/10.1109/clustr.2006.311848openalex-snapshot
Efficient MPI Collective Operations for Clusters in Long-and-Fast Networks
inferredcites →https://doi.org/10.1109/e-science.2006.261142openalex-snapshot
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
inferredcites →https://doi.org/10.1109/hpdc.2004.1323501openalex-snapshot
Wide-area communication for grids: an integrated solution to connectivity, performance and security problems
inferredcites →https://doi.org/10.1109/hpdc.2004.41openalex-snapshot
Wide-area communication for grids: an integrated solution to connectivity, performance and security problems
inferredcites →https://doi.org/10.1109/hpdc.2005.1520930openalex-snapshot
Supporting application-tailored grid file system sessions with WSRF-based services
inferredcites →https://doi.org/10.1109/hpdc.2006.1652133openalex-snapshot
WOW: Self-Organizing Wide Area Overlay Networks of Virtual Workstations
inferredcites →https://doi.org/10.1109/ipdps.2006.1639380openalex-snapshot
A virtual network (ViNe) architecture for grid computing
inferredcites →https://doi.org/10.1145/1272366.1272368openalex-snapshot
Smartsockets
inferredcites →https://doi.org/10.1145/1327452.1327492openalex-snapshot
MapReduce
inferredcites →https://doi.org/10.1145/1925805.1925816openalex-snapshot
The SDSC storage resource broker
inferredcites →https://doi.org/10.12921/cmst.2006.12.01.69-77openalex-snapshot
ProActive: an integrated platform for programming and running applications on Grids and P2P systems
inferredcites →https://doi.org/10.17487/rfc2764openalex-snapshot
A Framework for IP Based Virtual Private Networks

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Cloud Computing for Next‐Generation Sequencing Data Analysis
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Many task computing for orthologous genes identification in protozoan genomes using Hydra
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Cloud‐based parallel solution for estimating statistical significance of megabyte‐scale DNA sequences
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Advancing next‐generation sequencing data analytics with scalable distributed infrastructure
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Selectivity and molecular stress responses to classical and botanical acaricides in the predatory mite Phytoseiulus persimilis Athias‐Henriot ( Acari: Phytoseiidae )
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Feasibility Study and Experience on Using Cloud Infrastructure and Platform for Scientific Computing
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Data-Parallel Computational Model for Next Generation Sequencing on Commodity Clusters
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Parallel and Distributed Computing Methodologies in Bioinformatics
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Development of a Distributed Parallel Algorithm of 3D Hydrodynamic Calculation of Oil Production on the Basis of MapReduce Hadoop and MPI Technologies
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inferred← citeshttps://doi.org/10.1007/978-3-642-41591-3_3openalex-snapshot
Scheduling Model of Virtual Machine Base on Task Type in Multi-core System
inferred← citeshttps://doi.org/10.1007/978-3-642-55195-6_22openalex-snapshot
K-mulus: Strategies for BLAST in the Cloud
inferred← citeshttps://doi.org/10.1007/978-3-662-44722-2_23openalex-snapshot
CSMR: A Scalable Algorithm for Text Clustering with Cosine Similarity and MapReduce
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Temporal Verification for Scientific Cloud Workflows: State-of-the-Art and Research Challenges
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Cloud Computing
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Cloud Computing in Bioinformatics and Big Data Analytics: Current Status and Future Research
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A Prototype Model for Resource Provisioning in Cloud Computing Using MapReduce Technique
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Real-Time and Distributed Anomalies Detection Architecture and Implementation with Structured Streaming
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Handling Big Data Using MapReduce Over Hybrid Cloud
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Big Data Analytics in Bio-informatics
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Analysis of Diabetes and Heart Disease in Big Data Using MapReduce Framework
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Application of Big Data in Field of Medicine
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Human Stem Cell Cultures from Cleft Lip/Palate Patients Show Enrichment of Transcripts Involved in Extracellular Matrix Modeling By Comparison to Controls
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A Taxonomy and Survey of Scientific Computing in the Cloud
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Metabolic Flux Analysis in the Cloud
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Towards self-caring mapreduce: Proactively reducing fault-induced execution-time penalties
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Analysing Hadoop performance in a multi-user IaaS Cloud
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A hybrid CPU-GPU implementation to accelerate multiple pairwise protein sequence alignment
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An enhanced framework of genomics using big data computing
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BIG-BIO: - big data hadoop-based analytic cluster framework for bioinformatics
inferred← citeshttps://doi.org/10.1109/icimia.2017.7975546openalex-snapshot
A theoretical framework for cloud resource provisioning using MapReduce technique
inferred← citeshttps://doi.org/10.1109/icmcs.2012.6320295openalex-snapshot
A new mechanism to ensure integrity for MapReduce in cloud computing
inferred← citeshttps://doi.org/10.1109/icnc.2014.6975992openalex-snapshot
A MapReduce scheduling algorithm for time constraints in heterogeneous environment
inferred← citeshttps://doi.org/10.1109/icndc.2010.66openalex-snapshot
Screening Data for Phylogenetic Analysis of Land Plants: A Parallel Approach
inferred← citeshttps://doi.org/10.1109/icocs.2012.6458583openalex-snapshot
Result verification mechanism for MapReduce computation integrity in cloud computing
inferred← citeshttps://doi.org/10.1109/icpads.2010.116openalex-snapshot
Enhancing MapReduce via Asynchronous Data Processing
inferred← citeshttps://doi.org/10.1109/indin.2013.6622860openalex-snapshot
Virtualizing DDS middleware: Performance challenges and measurements
inferred← citeshttps://doi.org/10.1109/ipdps.2016.37openalex-snapshot
Mendel: A Distributed Storage Framework for Similarity Searching over Sequencing Data
inferred← citeshttps://doi.org/10.1109/ipdps.2017.120openalex-snapshot
Eliminating Irregularities of Protein Sequence Search on Multicore Architectures
inferred← citeshttps://doi.org/10.1109/ipdpsw.2012.250openalex-snapshot
MTSD: A Task Scheduling Algorithm for MapReduce Base on Deadline Constraints
inferred← citeshttps://doi.org/10.1109/ipdpsw.2014.64openalex-snapshot
Removing Sequential Bottlenecks in Analysis of Next-Generation Sequencing Data
inferred← citeshttps://doi.org/10.1109/itme.2015.14openalex-snapshot
A Fast Statistics and Analysis Solution of Medical Service Big Data
inferred← citeshttps://doi.org/10.1109/itng.2011.169openalex-snapshot
Use of Multi Threaded Asynchronous DNA Sequence Pattern Searching Tool to Identifying Zinc-Finger-Nuclease Binding Sites on the Human Genome
inferred← citeshttps://doi.org/10.1109/jns2.2012.6249246openalex-snapshot
Computaion integrity mechanism for MapReduce in cloud computing system
inferred← citeshttps://doi.org/10.1109/jsyst.2015.2501750openalex-snapshot
A Science Gateway Cloud With Cost-Adaptive VM Management for Computational Science and Applications
inferred← citeshttps://doi.org/10.1109/lisat.2013.6578221openalex-snapshot
Neural network based cloud computing platform for bioinformatics
inferred← citeshttps://doi.org/10.1109/lisat.2014.6845204openalex-snapshot
Hadoop based enhanced cloud architecture for bioinformatic algorithms
inferred← citeshttps://doi.org/10.1109/lisat.2015.7160180openalex-snapshot
Enhancing performance of Hadoop and MapReduce for scientific data using NoSQL database
inferred← citeshttps://doi.org/10.1109/msna.2012.6324625openalex-snapshot
A novel parallel clustering algorithm PXM based on FP-Tree
inferred← citeshttps://doi.org/10.1109/ocs.2012.40openalex-snapshot
Hadoop Applications in Bioinformatics
inferred← citeshttps://doi.org/10.1109/paap.2011.36openalex-snapshot
Parallelization of BLAST with MapReduce for Long Sequence Alignment
inferred← citeshttps://doi.org/10.1109/padsw.2014.7097867openalex-snapshot
MapReduce based parallel suffix tree construction for human genome
inferred← citeshttps://doi.org/10.1109/pdp52278.2021.00013openalex-snapshot
Bucket MapReduce: Relieving the Disk I/O Intensity of Data-Intensive Applications in MapReduce Frameworks
inferred← citeshttps://doi.org/10.1109/sc.2012.44openalex-snapshot
Design and analysis of data management in scalable parallel scripting
inferred← citeshttps://doi.org/10.1109/sc.2014.42openalex-snapshot
Orion: Scaling Genomic Sequence Matching with Fine-Grained Parallelization
inferred← citeshttps://doi.org/10.1109/spc.2013.6735099openalex-snapshot
Adapting MapReduce framework for genetic algorithm with large population
inferred← citeshttps://doi.org/10.1109/tbdata.2016.2599926openalex-snapshot
Kira: Processing Astronomy Imagery Using Big Data Technology
inferred← citeshttps://doi.org/10.1109/tcbb.2014.2361327openalex-snapshot
RBioCloud: A Light-Weight Framework for Bioconductor and R-based Jobs on the Cloud
inferred← citeshttps://doi.org/10.1109/tcbbio.2025.3565188openalex-snapshot
Scalable and Maintainable Distributed Sequence Alignment Using Spark
inferred← citeshttps://doi.org/10.1109/tcc.2015.2459704openalex-snapshot
Towards Robust Green Virtual Cloud Data Center Provisioning
inferred← citeshttps://doi.org/10.1109/tcc.2016.2535261openalex-snapshot
H2Hadoop: Improving Hadoop Performance Using the Metadata of Related Jobs
inferred← citeshttps://doi.org/10.1109/tcc.2016.2535277openalex-snapshot
Theoretical Results of QoS-Guaranteed Resource Scaling for Cloud-Based MapReduce
inferred← citeshttps://doi.org/10.1109/tpds.2010.101openalex-snapshot
Coordinating Computation and I/O in Massively Parallel Sequence Search
inferred← citeshttps://doi.org/10.1109/tpds.2012.88openalex-snapshot
Supporting HPC Analytics Applications with Access Patterns Using Data Restructuring and Data-Centric Scheduling Techniques in MapReduce
inferred← citeshttps://doi.org/10.1109/tpds.2014.2374600openalex-snapshot
Impact of MapReduce Policies on Job Completion Reliability and Job Energy Consumption
inferred← citeshttps://doi.org/10.1109/tpds.2015.2419671openalex-snapshot
On Traffic-Aware Partition and Aggregation in MapReduce for Big Data Applications
inferred← citeshttps://doi.org/10.1109/tpds.2015.2463817openalex-snapshot
Hybrid Job-Driven Scheduling for Virtual MapReduce Clusters
inferred← citeshttps://doi.org/10.1109/tsc.2015.2433914openalex-snapshot
A New Approach to the Cloud-Based Heterogeneous MapReduce Placement Problem
inferred← citeshttps://doi.org/10.1109/tst.2014.6961025openalex-snapshot
Opportunities for computational techniques for multi-omics integrated personalized medicine
inferred← citeshttps://doi.org/10.1109/tst.2016.7787008openalex-snapshot
Virtual machine-based task scheduling algorithm in a cloud computing environment
inferred← citeshttps://doi.org/10.1109/ucc.2012.52openalex-snapshot
Adapting MPI to MapReduce PaaS Clouds: An Experiment in Cross-Paradigm Execution
inferred← citeshttps://doi.org/10.1109/ucc.2014.89openalex-snapshot
A Cloud-Based Data Farming Platform for Molecular Dynamics Simulations
inferred← citeshttps://doi.org/10.1142/s0219720013300025openalex-snapshot
WHEN CLOUD COMPUTING MEETS BIOINFORMATICS: A REVIEW
inferred← citeshttps://doi.org/10.1145/1851476.1851489openalex-snapshot
MOON
inferred← citeshttps://doi.org/10.1145/1851476.1851490openalex-snapshot
MRAP
inferred← citeshttps://doi.org/10.1145/1851476.1851537openalex-snapshot
AzureBlast
inferred← citeshttps://doi.org/10.1145/1851476.1851544openalex-snapshot
Cloud computing paradigms for pleasingly parallel biomedical applications
inferred← citeshttps://doi.org/10.1145/1851476.1851550openalex-snapshot
Data parallelism in bioinformatics workflows using Hydra
inferred← citeshttps://doi.org/10.1145/1996023.1996027openalex-snapshot
Characterizing deep sequencing analytics using BFAST
inferred← citeshttps://doi.org/10.1145/1996092.1996106openalex-snapshot
MapReducing a genomic sequencing workflow
inferred← citeshttps://doi.org/10.1145/2047594.2047643openalex-snapshot
Introducing cloud computing with a senior design project in undergraduate education of computer system and network administration
inferred← citeshttps://doi.org/10.1145/2094114.2094118openalex-snapshot
Parallel data processing with MapReduce
inferred← citeshttps://doi.org/10.1145/2287016.2287026openalex-snapshot
SNP genotype calling with MapReduce
inferred← citeshttps://doi.org/10.1145/2287076.2287111openalex-snapshot
Distributed approximate spectral clustering for large-scale datasets
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