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Theory, practice, and conservation in the age of genomics: The Galápagos giant tortoise as a case study

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.1305openalex-snapshot

Challenges in analysis and interpretation of microsatellite data for population genetic studies

inferredcites →https://doi.org/10.1002/ece3.1388openalex-snapshot

Naturally rare versus newly rare: demographic inferences on two timescales inform conservation of Galápagos giant tortoises

inferredcites →https://doi.org/10.1002/ece3.5646openalex-snapshot

Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species

inferredcites →https://doi.org/10.1002/ece3.5677openalex-snapshot

Minimum sample sizes for invasion genomics: Empirical investigation in an invasive whitefly

inferredcites →https://doi.org/10.1002/ece3.776openalex-snapshot

Adaptive divergence along environmental gradients in a climate‐change‐sensitive mammal

inferredcites →https://doi.org/10.1007/s10592-014-0622-zopenalex-snapshot

Cryptic structure and niche divergence within threatened Galápagos giant tortoises from southern Isabela Island

inferredcites →https://doi.org/10.1016/j.biocon.2012.10.014openalex-snapshot

The genetic legacy of Lonesome George survives: Giant tortoises with Pinta Island ancestry identified in Galápagos

inferredcites →https://doi.org/10.1016/j.cub.2007.03.002openalex-snapshot

Lonesome George is not alone among Galápagos tortoises

inferredcites →https://doi.org/10.1016/j.cub.2011.12.004openalex-snapshot

Genetic rediscovery of an ‘extinct’ Galápagos giant tortoise species

inferredcites →https://doi.org/10.1016/j.cub.2016.02.062openalex-snapshot

Genomic Flatlining in the Endangered Island Fox

inferredcites →https://doi.org/10.1016/j.tree.2012.05.012openalex-snapshot

Harnessing genomics for delineating conservation units

inferredcites →https://doi.org/10.1023/a:1021864214375openalex-snapshot

Genetic divergence, phylogeography and conservation units of giant tortoises from Santa Cruz and Pinzón, Galápagos Islands

inferredcites →https://doi.org/10.1038/nature08365openalex-snapshot

Reconstructing Indian population history

inferredcites →https://doi.org/10.1038/nature10231openalex-snapshot

Inference of human population history from individual whole-genome sequences

inferredcites →https://doi.org/10.1038/nrg.2015.28openalex-snapshot

Harnessing the power of RADseq for ecological and evolutionary genomics

inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01617.xopenalex-snapshot

Microsatellite analysis of genetic divergence among populations of giant Galápagos tortoises

inferredcites →https://doi.org/10.1071/pc080146openalex-snapshot

Conservation and the Genetics of Populations

inferredcites →https://doi.org/10.1073/pnas.0400393101openalex-snapshot

Giant tortoises are not so slow: Rapid diversification and biogeographic consensus in the Galápagos

inferredcites →https://doi.org/10.1073/pnas.0805340105openalex-snapshot

Historical DNA analysis reveals living descendants of an extinct species of Galápagos tortoise

inferredcites →https://doi.org/10.1073/pnas.1006538107openalex-snapshot

Resolving postglacial phylogeography using high-throughput sequencing

inferredcites →https://doi.org/10.1073/pnas.96.23.13223openalex-snapshot

Origin and evolutionary relationships of giant Galápagos tortoises

inferredcites →https://doi.org/10.1080/00028487.2015.1037016openalex-snapshot

Using Next‐Generation Sequencing to Assist a Conservation Hatchery: a Single‐Nucleotide Polymorphism Panel for the Genetic Management of Endangered Delta Smelt

inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot

The variant call format and VCFtools

inferredcites →https://doi.org/10.1093/bioinformatics/btu121openalex-snapshot

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses

inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data

inferredcites →https://doi.org/10.1093/genetics/164.4.1567openalex-snapshot

Inference of Population Structure Using Multilocus Genotype Data: Linked Loci and Correlated Allele Frequencies

inferredcites →https://doi.org/10.1093/genetics/89.3.583openalex-snapshot

ESTIMATION OF AVERAGE HETEROZYGOSITY AND GENETIC DISTANCE FROM A SMALL NUMBER OF INDIVIDUALS

inferredcites →https://doi.org/10.1093/molbev/msp052openalex-snapshot

A Genomewide Comparison of Population Structure at STRPs and Nearby SNPs in Humans

inferredcites →https://doi.org/10.1098/rsbl.2005.0317openalex-snapshot

A cryptic taxon of Galápagos tortoise in conservation peril

inferredcites →https://doi.org/10.1111/1755-0998.12387openalex-snapshot

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

inferredcites →https://doi.org/10.1111/2041-210x.12067openalex-snapshot

diveRsity: An R package for the estimation and exploration of population genetics parameters and their associated errors

inferredcites →https://doi.org/10.1111/2041-210x.12700openalex-snapshot

Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

inferredcites →https://doi.org/10.1111/eva.12128openalex-snapshot

Genotyping by sequencing resolves shallow population structure to inform conservation of Chinook salmon (Oncorhynchus tshawytscha)

inferredcites →https://doi.org/10.1111/eva.12551openalex-snapshot

Theory, practice, and conservation in the age of genomics: The Galápagos giant tortoise as a case study

inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb00131.xopenalex-snapshot

PHYLOGEOGRAPHY AND HISTORY OF GIANT GALAPAGOS TORTOISES

inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02396.xopenalex-snapshot

FAST‐TRACK: Integrating QTL mapping and genome scans towards the characterization of candidate loci under parallel selection in the lake whitefish (Coregonus clupeaformis)

inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot

Detecting the number of clusters of individuals using the software structure : a simulation study

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05370.xopenalex-snapshot

Unravelling the peculiarities of island life: vicariance, dispersal and the diversification of the extinct and extant giant Galápagos tortoises

inferredcites →https://doi.org/10.1111/j.1439-0388.2011.00971.xopenalex-snapshot

Using genome‐wide information to minimize the loss of diversity in conservation programmes

inferredcites →https://doi.org/10.1111/j.1469-1795.2007.00113.xopenalex-snapshot

Lineage identification of Galápagos tortoises in captivity worldwide

inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

inferredcites →https://doi.org/10.1111/j.1558-5646.1963.tb03281.xopenalex-snapshot

THE MEASUREMENT OF EFFECTIVE POPULATION NUMBER

inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot

ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

inferredcites →https://doi.org/10.1111/j.1601-5223.1928.tb02483.xopenalex-snapshot

ZUSAMMENSETZUNG VON POPULATIONEN UND KORRELATIONSERSCHEINUNGEN VOM STANDPUNKT DER VERERBUNGSLEHRE AUS BETRACHTET

inferredcites →https://doi.org/10.1111/mec.12350openalex-snapshot

Genotyping‐by‐sequencing in ecological and conservation genomics

inferredcites →https://doi.org/10.1111/mec.12919openalex-snapshot

Lineage fusion in G alápagos giant tortoises

inferredcites →https://doi.org/10.1111/mec.13243openalex-snapshot

Seven common mistakes in population genetics and how to avoid them

inferredcites →https://doi.org/10.1111/mec.13322openalex-snapshot

A practical guide to environmental association analysis in landscape genomics

inferredcites →https://doi.org/10.1111/mec.13667openalex-snapshot

Admixture mapping identifies introgressed genomic regions in North American canids

inferredcites →https://doi.org/10.1111/mec.13743openalex-snapshot

Genomic variation at the tips of the adaptive radiation of Darwin's finches

inferredcites →https://doi.org/10.1111/mec.13830openalex-snapshot

Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin

inferredcites →https://doi.org/10.1111/mec.13948openalex-snapshot

Genetics and the conservation of natural populations: allozymes to genomes

inferredcites →https://doi.org/10.1126/sciadv.1501714openalex-snapshot

Whole-genome sequence analysis shows that two endemic species of North American wolf are admixtures of the coyote and gray wolf

inferredcites →https://doi.org/10.1126/science.1087486openalex-snapshot

Genes Record a Prehistoric Volcano Eruption in the Galapagos

inferredcites →https://doi.org/10.1186/gb-2013-14-12-r136openalex-snapshot

Population genomics of the endangered giant Galápagos tortoise

inferredcites →https://doi.org/10.1186/s12864-015-2020-4openalex-snapshot

Development of a SNP-based assay for measuring genetic diversity in the Tasmanian devil insurance population

inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot

Second-generation PLINK: rising to the challenge of larger and richer datasets

inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

inferredcites →https://doi.org/10.1371/journal.pone.0042649openalex-snapshot

Estimates of Genetic Differentiation Measured by FST Do Not Necessarily Require Large Sample Sizes When Using Many SNP Markers

inferredcites →https://doi.org/10.1371/journal.pone.0138779openalex-snapshot

Description of a New Galapagos Giant Tortoise Species (Chelonoidis; Testudines: Testudinidae) from Cerro Fatal on Santa Cruz Island

inferredcites →https://doi.org/10.1534/genetics.105.047860openalex-snapshot

Phylogeographic History and Gene Flow Among Giant Galapagos Tortoises on Southern Isabela Island

inferredcites →https://doi.org/10.1554/0014-3820(2002)056[2052:pahogg]2.0.co;2openalex-snapshot

PHYLOGEOGRAPHY AND HISTORY OF GIANT GALÁPAGOS TORTOISES

inferredcites →https://doi.org/10.3390/genes10090646openalex-snapshot

Patterns, Mechanisms and Genetics of Speciation in Reptiles and Amphibians

inferredcites →https://doi.org/10.3732/ajb.1500162openalex-snapshot

Landscape genomic analysis of candidate genes for climate adaptation in a California endemic oak, Quercus lobata

inferredcites →https://doi.org/10.5860/choice.44-3275openalex-snapshot

Conservation and the genetics of populations

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/zookeys.1294.200001zenodo-depositor-declared

Hymenoptera of Galápagos: diversity and distribution of one of the most species-rich insect orders in the archipelago

inferred← citeshttps://doi.org/10.1002/ece3.5646openalex-snapshot

Exploring a Pool‐seq‐only approach for gaining population genomic insights in nonmodel species

inferred← citeshttps://doi.org/10.1002/ece3.5677openalex-snapshot

Minimum sample sizes for invasion genomics: Empirical investigation in an invasive whitefly

inferred← citeshttps://doi.org/10.1002/ece3.8584openalex-snapshot

Neutral and adaptive drivers of genomic change in introduced brook trout ( Salvelinus fontinalis ) populations revealed by pooled sequencing

inferred← citeshttps://doi.org/10.1007/13836_2020_83openalex-snapshot

Wildlife Population Genomics: Applications and Approaches

inferred← citeshttps://doi.org/10.1007/s00227-019-3638-6openalex-snapshot

Fine-scale genetic structure in Lahille’s bottlenose dolphins (Tursiops truncatus gephyreus) is associated with social structure and feeding ecology

inferred← citeshttps://doi.org/10.1007/s00251-024-01356-6openalex-snapshot

Using bioinformatics to investigate functional diversity: a case study of MHC diversity in koalas

inferred← citeshttps://doi.org/10.1007/s10592-018-1129-9openalex-snapshot

Conservation of adaptive potential and functional diversity: integrating old and new approaches

inferred← citeshttps://doi.org/10.1016/b978-0-12-817554-5.00019-8openalex-snapshot

Evolution and phylogenetics

inferred← citeshttps://doi.org/10.1016/bs.amb.2019.08.002openalex-snapshot

Conservation genetics of elasmobranchs of the Mexican Pacific Coast, trends and perspectives

inferred← citeshttps://doi.org/10.1016/j.biocon.2024.110694openalex-snapshot

Species-specific erosion of genetic diversity in grassland butterflies depends on landscape land cover

inferred← citeshttps://doi.org/10.1016/j.cub.2020.04.088openalex-snapshot

Turtles and Tortoises Are in Trouble

inferred← citeshttps://doi.org/10.1038/s41467-023-39651-7openalex-snapshot

The role and risks of selective adaptation in extreme coral habitats

inferred← citeshttps://doi.org/10.1038/s42003-022-03483-wopenalex-snapshot

The Galapagos giant tortoise Chelonoidis phantasticus is not extinct

inferred← citeshttps://doi.org/10.1093/evolut/qpae164openalex-snapshot

Whole-genome sequencing confirms multiple species of Galapagos giant tortoises

inferred← citeshttps://doi.org/10.1093/evolut/qpaf003openalex-snapshot

Digest: Whole genomes delimit multiple species of Galapagos giant tortoises

inferred← citeshttps://doi.org/10.1093/jhered/esab063openalex-snapshot

Are Genomic Updates of Well-Studied Species Worth the Investment for Conservation? A Case Study of the Critically Endangered Magdalena River Turtle

inferred← citeshttps://doi.org/10.1111/1755-0998.12898openalex-snapshot

Evaluating sample size to estimate genetic management metrics in the genomics era

inferred← citeshttps://doi.org/10.1111/acv.12870openalex-snapshot

Galapagos giant tortoise trafficking case demonstrates the utility and applications of long‐term comprehensive genetic monitoring

inferred← citeshttps://doi.org/10.1111/csp2.13053openalex-snapshot

A pragmatic approach for integrating molecular tools into biodiversity conservation

inferred← citeshttps://doi.org/10.1111/eva.12661openalex-snapshot

Next‐generation conservation genetics and biodiversity monitoring

inferred← citeshttps://doi.org/10.1111/eva.12761openalex-snapshot

Pervasive admixture between eucalypt species has consequences for conservation and assisted migration

inferred← citeshttps://doi.org/10.1111/ibi.12951openalex-snapshot

Gaps in genetic knowledge affect conservation management of kiwi (Apteryx) species

inferred← citeshttps://doi.org/10.1111/jzs.12387openalex-snapshot

Colonization history of Galapagos giant tortoises: Insights from mitogenomes support the progression rule

inferred← citeshttps://doi.org/10.1111/mec.14701openalex-snapshot

Adaptive population divergence and directional gene flow across steep elevational gradients in a climate‐sensitive mammal

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Population structure, genomic diversity and demographic history of Komodo dragons inferred from whole‐genome sequencing

inferred← citeshttps://doi.org/10.1111/mec.16176openalex-snapshot

Demographic history and patterns of molecular evolution from whole genome sequencing in the radiation of Galapagos giant tortoises

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Clinging on the brink: Whole genomes reveal human‐induced population declines and severe inbreeding in the Critically Endangered Emirati Leaf‐toed Gecko (Asaccus caudivolvulus)

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Spatial Replication Is Important for Developing Landscape Genetic Inferences for a Wetland Salamander

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Population genomic structure of killer whales ( Orcinus orca ) in Australian and New Zealand waters

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Transcriptomic genotyping elucidates the population structure and demographic history of the endangered poison frog Oophaga vicentei (Anura: Dendrobatidae)

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How “simple” methodological decisions affect interpretation of population structure based on reduced representation library DNA sequencing: A case study using the lake whitefish

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Genetic Rescue and the Plight of Ponui Hybrids

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Patterns, Mechanisms and Genetics of Speciation in Reptiles and Amphibians

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Optimizing Sample Size for Population Genomic Study in a Global Invasive Lady Beetle, Harmonia Axyridis

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Identifying Shared Strategies and Solutions to the Human–Giant Tortoise Interactions in Santa Cruz, Galapagos: A Nominal Group Technique Application

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