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Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/s00343-017-6038-0openalex-snapshot
Predictive ability of genomic selection models for breeding value estimation on growth traits of Pacific white shrimp Litopenaeus vannamei
inferredcites →https://doi.org/10.1007/s10126-016-9718-4openalex-snapshot
Genomic Selection Using Extreme Phenotypes and Pre-Selection of SNPs in Large Yellow Croaker (Larimichthys crocea)
inferredcites →https://doi.org/10.1007/s11160-017-9473-2openalex-snapshot
Advances of genotyping-by-sequencing in fisheries and aquaculture
inferredcites →https://doi.org/10.1007/s13580-017-0297-8openalex-snapshot
Genotyping-by-sequencing: a promising tool for plant genetics research and breeding
inferredcites →https://doi.org/10.1016/j.ajhg.2009.01.005openalex-snapshot
A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals
inferredcites →https://doi.org/10.1016/j.aquaculture.2018.03.004openalex-snapshot
Accuracy of genotype imputation and genomic predictions in a two-generation farmed Atlantic salmon population using high-density and low-density SNP panels
inferredcites →https://doi.org/10.1016/j.aquaculture.2019.734641openalex-snapshot
Genomic prediction for commercial traits using univariate and multivariate approaches in Nile tilapia (Oreochromis niloticus)
inferredcites →https://doi.org/10.1016/j.aquaculture.2020.735786openalex-snapshot
Genomic selection for parasitic ciliate Cryptocaryon irritans resistance in large yellow croaker
inferredcites →https://doi.org/10.1016/j.aquaculture.2020.736323openalex-snapshot
Evaluation for the effect of low-coverage sequencing on genomic selection in large yellow croaker
inferredcites →https://doi.org/10.1017/s0016672312000274openalex-snapshot
Genome-wide association mapping including phenotypes from relatives without genotypes
inferredcites →https://doi.org/10.1038/nrg2575openalex-snapshot
Mapping genes for complex traits in domestic animals and their use in breeding programmes
inferredcites →https://doi.org/10.1038/s41576-020-0227-yopenalex-snapshot
Harnessing genomics to fast-track genetic improvement in aquaculture
inferredcites →https://doi.org/10.1073/pnas.1519061113openalex-snapshot
Changes in genetic selection differentials and generation intervals in US Holstein dairy cattle as a result of genomic selection
inferredcites →https://doi.org/10.1093/genetics/157.4.1819openalex-snapshot
Prediction of Total Genetic Value Using Genome-Wide Dense Marker Maps
inferredcites →https://doi.org/10.1093/jas/sky280openalex-snapshot
Genome-wide association study and prediction of genomic breeding values for fatty-acid composition in Korean Hanwoo cattle using a high-density single-nucleotide polymorphism array1
inferredcites →https://doi.org/10.1111/1755-0998.12337openalex-snapshot
The development and characterization of a 57 K single nucleotide polymorphism array for rainbow trout
inferredcites →https://doi.org/10.1111/eva.13218openalex-snapshot
First genomic prediction and genome‐wide association for complex growth‐related traits in Rock Bream (Oplegnathus fasciatus)
inferredcites →https://doi.org/10.1111/eva.13240openalex-snapshot
Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data
inferredcites →https://doi.org/10.1111/eva.13262openalex-snapshot
Strategies to improve the accuracy and reduce costs of genomic prediction in aquaculture species
inferredcites →https://doi.org/10.1111/jbg.12335openalex-snapshot
Accurate genomic predictions for BCWD resistance in rainbow trout are achieved using low‐density SNP panels: Evidence that long‐range LD is a major contributing factor
inferredcites →https://doi.org/10.1186/1297-9686-44-8openalex-snapshot
Comparison on genomic predictions using three GBLUP methods and two single-step blending methods in the Nordic Holstein population
inferredcites →https://doi.org/10.1186/1297-9686-45-39openalex-snapshot
A low-marker density implementation of genomic selection in aquaculture using within-family genomic breeding values
inferredcites →https://doi.org/10.1186/1471-2164-15-90openalex-snapshot
Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
inferredcites →https://doi.org/10.1186/s12711-015-0100-1openalex-snapshot
Accounting for trait architecture in genomic predictions of US Holstein cattle using a weighted realized relationship matrix
inferredcites →https://doi.org/10.1186/s12711-016-0226-9openalex-snapshot
Genomic prediction of host resistance to sea lice in farmed Atlantic salmon populations
inferredcites →https://doi.org/10.1186/s12711-017-0293-6openalex-snapshot
Genomic selection models double the accuracy of predicted breeding values for bacterial cold water disease resistance compared to a traditional pedigree-based model in rainbow trout aquaculture
inferredcites →https://doi.org/10.1186/s12711-018-0400-3openalex-snapshot
Weighted single-step genomic BLUP improves accuracy of genomic breeding values for protein content in French dairy goats: a quantitative trait influenced by a major gene
inferredcites →https://doi.org/10.1186/s12711-019-0500-8openalex-snapshot
Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs
inferredcites →https://doi.org/10.1186/s12711-020-00566-2openalex-snapshot
Prediction of genomic breeding values based on pre-selected SNPs using ssGBLUP, WssGBLUP and BayesB for Edwardsiellosis resistance in Japanese flounder
inferredcites →https://doi.org/10.1186/s12864-015-2117-9openalex-snapshot
Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array
inferredcites →https://doi.org/10.1186/s12864-017-4004-zopenalex-snapshot
Use of biological priors enhances understanding of genetic architecture and genomic prediction of complex traits within and between dairy cattle breeds
inferredcites →https://doi.org/10.1186/s12864-020-06955-7openalex-snapshot
Genetic architecture and genomic selection of female reproduction traits in rainbow trout
inferredcites →https://doi.org/10.1186/s13742-015-0047-8openalex-snapshot
Second-generation PLINK: rising to the challenge of larger and richer datasets
inferredcites →https://doi.org/10.1186/s40104-020-00493-8openalex-snapshot
The superiority of multi-trait models with genotype-by-environment interactions in a limited number of environments for genomic prediction in pigs
inferredcites →https://doi.org/10.1371/journal.pone.0019379openalex-snapshot
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
inferredcites →https://doi.org/10.1534/g3.116.035220openalex-snapshot
Genomic Prediction of Resistance to Pasteurellosis in Gilthead Sea Bream (Sparus aurata) Using 2b-RAD Sequencing
inferredcites →https://doi.org/10.1534/g3.117.040717openalex-snapshot
Genotype Imputation To Improve the Cost-Efficiency of Genomic Selection in Farmed Atlantic Salmon
inferredcites →https://doi.org/10.1534/g3.118.200075openalex-snapshot
Genome-Wide Association and Genomic Selection for Resistance to Amoebic Gill Disease in Atlantic Salmon
inferredcites →https://doi.org/10.1534/g3.118.200593openalex-snapshot
Mapping and Sequencing of a Significant Quantitative Trait Locus Affecting Resistance to Koi Herpesvirus in Common Carp
inferredcites →https://doi.org/10.1534/g3.119.400463openalex-snapshot
Genome-Wide Association Analysis for Resistance to Infectious Pancreatic Necrosis Virus Identifies Candidate Genes Involved in Viral Replication and Immune Response in Rainbow Trout ( Oncorhynchus mykiss )
inferredcites →https://doi.org/10.1534/g3.119.400800openalex-snapshot
Optimizing Low-Cost Genotyping and Imputation Strategies for Genomic Selection in Atlantic Salmon
inferredcites →https://doi.org/10.1534/g3.120.401343openalex-snapshot
Development and Validation of an Open Access SNP Array for Nile Tilapia ( Oreochromis niloticus )
inferredcites →https://doi.org/10.1534/genetics.116.187161openalex-snapshot
Genomic Prediction for Quantitative Traits Is Improved by Mapping Variants to Gene Ontology Categories in Drosophila melanogaster
inferredcites →https://doi.org/10.2527/jas.2017.1656openalex-snapshot
Genomic prediction for growth and reproduction traits in pig using an admixed reference population1
inferredcites →https://doi.org/10.2527/jas2017.1656openalex-snapshot
Genomic prediction for growth and reproduction traits in pig using an admixed reference population
inferredcites →https://doi.org/10.3168/jds.2007-0980openalex-snapshot
Efficient Methods to Compute Genomic Predictions
inferredcites →https://doi.org/10.3168/jds.2008-1646openalex-snapshot
Invited review: Genomic selection in dairy cattle: Progress and challenges
inferredcites →https://doi.org/10.3168/jds.2011-4338openalex-snapshot
Reliability of direct genomic values for animals with different relationships within and to the reference population
inferredcites →https://doi.org/10.3168/jds.2011-5019openalex-snapshot
Improving accuracy of genomic predictions within and between dairy cattle breeds with imputed high-density single nucleotide polymorphism panels
inferredcites →https://doi.org/10.3389/fgene.2014.00402openalex-snapshot
Genomic prediction in an admixed population of Atlantic salmon (Salmo salar)
inferredcites →https://doi.org/10.3389/fgene.2016.00096openalex-snapshot
Evaluation of Genome-Enabled Selection for Bacterial Cold Water Disease Resistance Using Progeny Performance Data in Rainbow Trout: Insights on Genotyping Methods and Genomic Prediction Models
inferredcites →https://doi.org/10.3389/fgene.2018.00693openalex-snapshot
Genomic Selection in Aquaculture: Application, Limitations and Opportunities With Special Reference to Marine Shrimp and Pearl Oysters
inferredcites →https://doi.org/10.3389/fgene.2020.00124openalex-snapshot
Genomic Prediction Using Low Density Marker Panels in Aquaculture: Performance Across Species, Traits, and Genotyping Platforms
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4754230openalex-extracted
Selective Genotyping Strategies for Genomic Selection for Host Resistance Against Pancreatic Diseases in a. Salmon
inferred← citeshttps://doi.org/10.1007/s10499-026-02567-2openalex-snapshot
Establishment and comprehensive performance evaluation of auto- and allo-tetraploids derived from Crassostrea gigas and C. angulata
inferred← citeshttps://doi.org/10.1007/s11250-025-04293-yopenalex-snapshot
Performance of weighted genomic BLUP and Bayesian methods for Hanwoo carcass traits
inferred← citeshttps://doi.org/10.1016/j.animal.2025.101747openalex-snapshot
Genomic prediction accuracy for five economically important traits in cashmere goats across single-nucleotide polymorphism densities and methods
inferred← citeshttps://doi.org/10.1016/j.aqrep.2023.101582openalex-snapshot
Genetic parameters and genomic prediction of resistance to koi herpesvirus disease using a low-density SNP panel on two Amur mirror carp populations
inferred← citeshttps://doi.org/10.1016/j.aqrep.2024.102132openalex-snapshot
Genomic prediction model optimization for growth traits of olive flounder (Paralichthys olivaceus)
inferred← citeshttps://doi.org/10.1016/j.aqrep.2024.102140openalex-snapshot
Assessing accuracy of imputation using different SNP densities as strategy for breeding programs of the fish pacu Piaractus mesopotamicus
inferred← citeshttps://doi.org/10.1016/j.aqrep.2026.103464openalex-snapshot
Genomic prediction of survival traits for scuticociliatosis resistance in a vaccinated olive flounder cohort: Comprehensive evaluation and optimization of statistical and machine learning models
inferred← citeshttps://doi.org/10.1016/j.aqrep.2026.103579openalex-snapshot
Application of genomic selection in Korean abalone by evaluating growth traits using PBLUP, GBLUP, and ssGBLUP models
inferred← citeshttps://doi.org/10.1016/j.aqrep.2026.103659openalex-snapshot
Extreme-phenotype genome-wide association study of growth traits in golden pompano (Trachinotus blochii) and implications for genomic selection
inferred← citeshttps://doi.org/10.1016/j.aqrep.2026.103875openalex-snapshot
Genome-wide association study and genomic selection reveal the genetic architecture of glycogen content in autotetraploid Crassostrea gigas
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738332openalex-snapshot
Genome-wide association and genomic prediction of resistance to Flavobacterium columnare in a farmed rainbow trout population
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738890openalex-snapshot
Development of a global SNP resource for diversity, provenance, and parentage analyses on the Indo-Pacific giant black tiger shrimp (Penaeus monodon)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.739536openalex-snapshot
Genomic prediction of survival against Vibrio harveyi in leopard coral grouper (Plectropomus leopardus) using GBLUP, weighted GBLUP, and BayesCπ
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.739878openalex-snapshot
Potential of genomic selection for growth, meat content and colour traits in mixed-family breeding designs for the Pacific oyster Crassostrea gigas
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741345openalex-snapshot
Selective genotyping strategies for genomic selection for host resistance against pancreatic disease in A. salmon
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741895openalex-snapshot
Potential of genome-wide association studies to improve genomic selection for growth traits in blotched snakehead (Channa maculata)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.741962openalex-snapshot
Genetic basis analysis and genome prediction of swimming performance traits in juvenile spotted sea bass (Lateolabrax maculatus)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.742114openalex-snapshot
Evaluation of genomic prediction of resistance to visceral white-spot disease in large yellow croaker (Larimichthys crocea)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742260openalex-snapshot
First genome-wide association and genomic prediction of ammonia‑nitrogen tolerance in tiger pufferfish (Takifugu rubripes)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742576openalex-snapshot
Genomic selection for hard-to-measure traits in aquaculture: Challenges in balancing genetic gain and diversity
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742592openalex-snapshot
Genotype-by-environment interaction in production traits of yellowtail kingfish (Seriola lalandi) reared in RAS and flow through systems
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.742837openalex-snapshot
Using a comprehensive donor and host dataset to decipher the heritability and genetic architecture of pearl traits in the black-lipped oyster (Pinctada margaritifera)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.743250openalex-snapshot
Genomic prediction of scale drop disease resistance in barramundi Lates calcarifer under controlled laboratory conditions
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2026.743943openalex-snapshot
Optimization of reference population for imputation of low-density SNPs panel for genomic prediction in Atlantic salmon
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2026.744249openalex-snapshot
Harnessing SNPs and InDels from whole-genome sequencing to enhance genomic prediction in sturgeons
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2026.744344openalex-snapshot
Integrating marker preselection and machine learning methods to enhance low-cost genomic selection breeding for resistance to Edwardsiella tarda in spotted knifejaw (Oplegnathus punctatus)
inferred← citeshttps://doi.org/10.1016/j.cbd.2025.101704openalex-snapshot
Incorporating GWAS-derived prior information enhances genomic prediction for body size traits in the mud crab (Scylla paramamosain)
inferred← citeshttps://doi.org/10.1016/j.livsci.2024.105582openalex-snapshot
Identification of candidate genes and genomic prediction for early heifer pregnancy in Nelore beef cattle
inferred← citeshttps://doi.org/10.1016/j.psj.2023.102549openalex-snapshot
Haplotype analysis of genomic prediction by incorporating genomic pathway information based on high-density SNP marker in Chinese yellow-feathered chicken
inferred← citeshttps://doi.org/10.1016/j.watbs.2025.100494openalex-snapshot
Advancing aquaculture breeding through genomic selection: models, tools, and challenges
inferred← citeshttps://doi.org/10.1016/j.ygeno.2024.110874openalex-snapshot
Cost-effective genomic prediction of critical economic traits in sturgeons through low-coverage sequencing
inferred← citeshttps://doi.org/10.1038/s41598-025-98536-5openalex-snapshot
A novel approach for DNA extraction of white spot syndrome virus detection in penaeid shrimp
inferred← citeshttps://doi.org/10.1051/alr/2025006openalex-snapshot
States of development and application of genetic and genomic tools in aquaculture and conservation programs: a guide for strengthening dialogue among practitioners of aquaculture and genetics
inferred← citeshttps://doi.org/10.1093/genetics/iyaf245openalex-snapshot
Genomic prediction using mCADD scores as prior information in a mouse population
inferred← citeshttps://doi.org/10.1111/age.13310openalex-snapshot
Weighted genomic prediction for growth and carcass‐related traits in Nelore cattle
inferred← citeshttps://doi.org/10.1111/eva.70147openalex-snapshot
Genomic Prediction for Growth‐Related Traits in Golden Pompano ( Trachinotus ovatus )
inferred← citeshttps://doi.org/10.1111/raq.12716openalex-snapshot
Genomic selection and its research progress in aquaculture breeding
inferred← citeshttps://doi.org/10.1186/s12711-023-00832-zopenalex-snapshot
Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)
inferred← citeshttps://doi.org/10.1186/s12711-025-01023-8openalex-snapshot
Multi-ancestry genome-wide association meta-analysis identifies candidate genes for computed tomography-based carcass composition traits in pigs
inferred← citeshttps://doi.org/10.1186/s12864-024-10249-7openalex-snapshot
RETRACTED ARTICLE: Accuracy of Genomic prediction for fleece traits in Inner Mongolia Cashmere goats
inferred← citeshttps://doi.org/10.1186/s12864-025-11247-zopenalex-snapshot
Advancing genetic improvement in the omics era: status and priorities for United States aquaculture
inferred← citeshttps://doi.org/10.1186/s40104-023-00863-yopenalex-snapshot
Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
inferred← citeshttps://doi.org/10.1186/s40104-026-01384-0openalex-snapshot
Enhancing genomic prediction for key production traits in chickens through ultrasound phenotyping and multi-model comparative analysis
inferred← citeshttps://doi.org/10.1186/s40104-026-01477-wopenalex-snapshot
From linear models to deep learning: statistical advances in genomic selection for animal breeding
inferred← citeshttps://doi.org/10.20944/preprints202405.0592.v1openalex-snapshot
Progress and Application of Genomic Selection in Sheep and Goat
inferred← citeshttps://doi.org/10.2478/aoas-2025-0078openalex-snapshot
A Review of Genomics Application in Aquaculture: Status, Challenges, and Priorities for Future Direction *
inferred← citeshttps://doi.org/10.3389/fgene.2023.1194266openalex-snapshot
Evaluation of low-density SNP panels and imputation for cost-effective genomic selection in four aquaculture species
inferred← citeshttps://doi.org/10.3389/fpls.2025.1579376openalex-snapshot
Estimation of ryegrass (Lolium) dry matter yield using genomic prediction considering genotype by environment interaction across south-eastern Australia
inferred← citeshttps://doi.org/10.3389/fvets.2024.1325831openalex-snapshot
Impacts of reference population size and methods on the accuracy of genomic prediction for fleece traits in Inner Mongolia Cashmere Goats
inferred← citeshttps://doi.org/10.3390/ani13243871openalex-snapshot
Increased Accuracy of Genomic Prediction Using Preselected SNPs from GWAS with Imputed Whole-Genome Sequence Data in Pigs
inferred← citeshttps://doi.org/10.3390/ani14182659openalex-snapshot
Caprine and Ovine Genomic Selection—Progress and Application
inferred← citeshttps://doi.org/10.3390/ani15081118openalex-snapshot
Weighted GBLUP in Simulated Beef Cattle Populations: Impact of Reference Population, Marker Density, and Heritability
inferred← citeshttps://doi.org/10.3390/ani16050782openalex-snapshot
Genetic Parameter Estimates for Growth, Meat Yield and Foot Color Traits of Pacific Abalone Haliotis discus hannai
inferred← citeshttps://doi.org/10.3390/fishes11020115openalex-snapshot
A Unified Comparative Evaluation of Genomic Prediction Models Across Four Aquaculture Species
inferred← citeshttps://doi.org/10.3390/genes13122247openalex-snapshot
Systematic Evaluation of Genomic Prediction Algorithms for Genomic Prediction and Breeding of Aquatic Animals
inferred← citeshttps://doi.org/10.3390/ijms25179756openalex-snapshot
GWAS Enhances Genomic Prediction Accuracy of Caviar Yield, Caviar Color and Body Weight Traits in Sturgeons Using Whole-Genome Sequencing Data
inferred← citeshttps://doi.org/10.3390/ijms26147007openalex-snapshot
Prioritized SNP Selection from Whole-Genome Sequencing Improves Genomic Prediction Accuracy in Sturgeons Using Linear and Machine Learning Models
inferred← citeshttps://doi.org/10.3390/ijms27146202openalex-snapshot
Local Enrichment of Multi-SNP Markers Improves Genomic Prediction from Low-Density Genotyping in Pacific White Shrimp
inferred← citeshttps://doi.org/10.3390/vetsci12100996openalex-snapshot
Genomic Selection for Economic Traits in Inner Mongolia Cashmere Goats by Integrating GWAS Prior Information
inferred← citeshttps://doi.org/10.4025/actasciagron.v47i1.69089openalex-snapshot
Two-step genomic prediction using artificial neural networks - an effective strategy for reducing computational costs and increasing prediction accuracy
inferred← citeshttps://doi.org/10.6084/m9.figshare.22792821openalex-snapshot
Additional file 1 of Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
inferred← citeshttps://doi.org/10.6084/m9.figshare.22792824openalex-snapshot
Additional file 2 of Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
inferred← citeshttps://doi.org/10.6084/m9.figshare.22792827openalex-snapshot
Additional file 3 of Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
inferred← citeshttps://doi.org/10.6084/m9.figshare.22792830openalex-snapshot
Additional file 4 of Improving the accuracy of genomic prediction for meat quality traits using whole genome sequence data in pigs
inferred← citeshttps://doi.org/10.6084/m9.figshare.23949741openalex-snapshot
Additional file 1 of Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)
inferred← citeshttps://doi.org/10.6084/m9.figshare.23949744openalex-snapshot
Additional file 2 of Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)
inferred← citeshttps://doi.org/10.70675/12f4d23eze28fz49f9z86faz2a6cf38b847bopenalex-snapshot
Mise en place de la sélection génomique chez l’huître creuse Crassostrea gigas
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