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Barramundi (Lates calcarifer) rare coloration patterns: a multiomics approach to understand the “panda” phenotype

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1242/dev.128.20.3975zenodo-depositor-declared

Severe nasal clefting and abnormal embryonic apoptosis in Alx3/Alx4 double mutant mice

inferredcites →https://doi.org/10.17912/micropub.biology.000896zenodo-depositor-declared

A frameshift variant in the melanophilin gene is associated with loss of pigment from shed skin in ball pythons (Python regius)

inferredcites →https://doi.org/10.1002/9780470987100.ch8openalex-snapshot

Melanosome Trafficking and Transfer

inferredcites →https://doi.org/10.1002/jez.b.23041openalex-snapshot

Functional conservation and divergence of color‐pattern‐related agouti family genes in teleost fishes

inferredcites →https://doi.org/10.1006/dbio.1995.1004openalex-snapshot

Genetic Control of Adult Pigment Stripe Development in Zebrafish

inferredcites →https://doi.org/10.1007/s00427-002-0275-7openalex-snapshot

Variations in DNA (cytosine-5)-methyltransferase-1 expression during oogenesis and early development of the zebrafish

inferredcites →https://doi.org/10.1007/s10695-017-0379-7openalex-snapshot

Comparative transcriptome analysis of molecular mechanism underlying gray-to-red body color formation in red crucian carp (Carassius auratus, red var.)

inferredcites →https://doi.org/10.1016/b978-0-12-374553-8.00041-1openalex-snapshot

THE SKIN | Coloration and Chromatophores in Fishes

inferredcites →https://doi.org/10.1016/j.aquaculture.2018.08.057openalex-snapshot

ASIP disruption via CRISPR/Cas9 system induces black patches dispersion in Oujiang color common carp

inferredcites →https://doi.org/10.1016/j.aquaculture.2021.737334openalex-snapshot

microRNA-430b targets scavenger receptor class B member 1 (scarb1) and inhibits coloration and carotenoid synthesis in koi carp (Cyprinus carpio L.)

inferredcites →https://doi.org/10.1016/j.aquaculture.2021.737429openalex-snapshot

Identification of pigment genes (melanin, carotenoid and pteridine) associated with skin color variant in red tilapia using transcriptome analysis

inferredcites →https://doi.org/10.1016/j.aquaculture.2023.739859openalex-snapshot

The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview

inferredcites →https://doi.org/10.1016/j.aquaculture.2024.740820openalex-snapshot

Revealing the genetic and molecular drivers behind golden and platinum coloration in barramundi (Lates calcarifer)

inferredcites →https://doi.org/10.1016/j.cbpa.2017.06.001openalex-snapshot

Fish pigmentation and the melanocortin system

inferredcites →https://doi.org/10.1016/j.cbpa.2023.111524openalex-snapshot

Functional relation of agouti signaling proteins (ASIPs) to pigmentation and color change in the starry flounder, Platichthys stellatus

inferredcites →https://doi.org/10.1016/j.cub.2007.09.028openalex-snapshot

Zebrafish Melanophilin Facilitates Melanosome Dispersion by Regulating Dynein

inferredcites →https://doi.org/10.1016/j.cub.2014.11.013openalex-snapshot

Zebrafish Stripes as a Model for Vertebrate Colour Pattern Formation

inferredcites →https://doi.org/10.1016/j.gde.2019.07.002openalex-snapshot

The identification of genes involved in the evolution of color patterns in fish

inferredcites →https://doi.org/10.1016/j.gene.2013.05.047openalex-snapshot

New insights into the melanophilin (MLPH) gene controlling coat color phenotypes in American mink

inferredcites →https://doi.org/10.1016/j.jbc.2022.102508openalex-snapshot

Large Rab GTPase Rab44 regulates microtubule-dependent retrograde melanosome transport in melanocytes

inferredcites →https://doi.org/10.1016/j.mce.2015.04.020openalex-snapshot

PACAP system evolution and its role in melanophore function in teleost fish skin

inferredcites →https://doi.org/10.1016/j.ydbio.2008.03.036openalex-snapshot

Conditional deletion of Hand2 reveals critical functions in neurogenesis and cell type-specific gene expression for development of neural crest-derived noradrenergic sympathetic ganglion neurons

inferredcites →https://doi.org/10.1034/j.1600-0854.2002.31202.xopenalex-snapshot

Myosin‐V, a Versatile Motor for Short‐Range Vesicle Transport

inferredcites →https://doi.org/10.1038/nature20109openalex-snapshot

Developmental mechanisms of stripe patterns in rodents

inferredcites →https://doi.org/10.1038/npp.2012.112openalex-snapshot

DNA Methylation and Its Basic Function

inferredcites →https://doi.org/10.1038/s41467-020-20088-1openalex-snapshot

In situ differentiation of iridophore crystallotypes underlies zebrafish stripe patterning

inferredcites →https://doi.org/10.1038/s41598-019-40251-zopenalex-snapshot

Countershading in zebrafish results from an Asip1 controlled dorsoventral gradient of pigment cell differentiation

inferredcites →https://doi.org/10.1038/s42003-021-01917-5openalex-snapshot

A role for Dynlt3 in melanosome movement, distribution, acidity and transfer

inferredcites →https://doi.org/10.1038/srep28405openalex-snapshot

Specification of jaw identity by the Hand2 transcription factor

inferredcites →https://doi.org/10.1073/pnas.0607790104openalex-snapshot

Pattern regulation in the stripe of zebrafish suggests an underlying dynamic and autonomous mechanism

inferredcites →https://doi.org/10.1073/pnas.1209397109openalex-snapshot

Melanoregulin regulates a shedding mechanism that drives melanosome transfer from melanocytes to keratinocytes

inferredcites →https://doi.org/10.1086/675678openalex-snapshot

The Hormonal Regulation of Color Changes in the Sexually Dichromatic FrogBuergeria robusta

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btw354openalex-snapshot

MultiQC: summarize analysis results for multiple tools and samples in a single report

inferredcites →https://doi.org/10.1093/carcin/21.3.461openalex-snapshot

DNA methylation: past, present and future directions

inferredcites →https://doi.org/10.1093/jhered/esi079openalex-snapshot

Chromosomal Assignment of the Canine Melanophilin Gene (MLPH): A Candidate Gene for Coat Color Dilution in Pinschers

inferredcites →https://doi.org/10.1093/jhered/esm021openalex-snapshot

A Noncoding Melanophilin Gene (MLPH) SNP at the Splice Donor of Exon 1 Represents a Candidate Causal Mutation for Coat Color Dilution in Dogs

inferredcites →https://doi.org/10.1098/rsta.2020.0274openalex-snapshot

Studies of Turing pattern formation in zebrafish skin

inferredcites →https://doi.org/10.1101/gr.072090.107openalex-snapshot

A gene duplication affecting expression of the ovine ASIP gene is responsible for white and black sheep

inferredcites →https://doi.org/10.1111/are.15295openalex-snapshot

Functional differentiation analysis of duplicated mlpha gene in Oujiang color common carp ( Cyprinus carpio var. color ) on colour formation

inferredcites →https://doi.org/10.1111/pcmr.12359openalex-snapshot

Pheomelanin in fish?

inferredcites →https://doi.org/10.1111/pcmr.12931openalex-snapshot

Rab GTPases: Key players in melanosome biogenesis, transport, and transfer

inferredcites →https://doi.org/10.1128/mcb.23.15.5245-5255.2003openalex-snapshot

The Actin-Binding Domain of Slac2-a/Melanophilin Is Required for Melanosome Distribution in Melanocytes

inferredcites →https://doi.org/10.1146/annurev-genet-031423-120918openalex-snapshot

Mechanisms Underlying the Formation and Evolution of Vertebrate Color Patterns

inferredcites →https://doi.org/10.1146/annurev-genet-112618-043741openalex-snapshot

Zebrafish Pigment Pattern Formation: Insights into the Development and Evolution of Adult Form

inferredcites →https://doi.org/10.1186/1471-2164-14-171openalex-snapshot

Transcriptomics of morphological color change in polychromatic Midas cichlids

inferredcites →https://doi.org/10.1186/1471-2164-15-754openalex-snapshot

Transcriptome profiling of natural dichromatism in the annual fishes Nothobranchius furzeri and Nothobranchius kadleci

inferredcites →https://doi.org/10.1186/gb-2012-13-10-r87openalex-snapshot

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

inferredcites →https://doi.org/10.1186/s12864-016-3046-yopenalex-snapshot

Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

inferredcites →https://doi.org/10.1186/s12864-018-5189-5openalex-snapshot

Identification and characterization of skin color microRNAs in Koi carp (Cyprinus carpio L.) by Illumina sequencing

inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

inferredcites →https://doi.org/10.1201/b15974openalex-snapshot

Biology and Culture of Asian Seabass Lates Calcarifer

inferredcites →https://doi.org/10.1371/journal.pgen.1005954openalex-snapshot

Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding

inferredcites →https://doi.org/10.1371/journal.pone.0048526openalex-snapshot

Transient Ectopic Overexpression of Agouti-Signalling Protein 1 (Asip1) Induces Pigment Anomalies in Flatfish

inferredcites →https://doi.org/10.1371/journal.pone.0129219openalex-snapshot

LASP1, a Newly Identified Melanocytic Protein with a Possible Role in Melanin Release, but Not in Melanoma Progression

inferredcites →https://doi.org/10.1677/joe-07-0555openalex-snapshot

Recombinant novel pituitary adenylate cyclase-activating polypeptide from African catfish (Clarias gariepinus) authenticates its biological function as a growth-promoting factor in low vertebrates

inferredcites →https://doi.org/10.3389/fcell.2020.00062openalex-snapshot

Developmental and Cellular Basis of Vertical Bar Color Patterns in the East African Cichlid Fish Haplochromis latifasciatus

inferredcites →https://doi.org/10.3389/fevo.2020.608289openalex-snapshot

The Biology of Polymorphic Melanic Side-Spotting Patterns in Poeciliid Fishes

inferredcites →https://doi.org/10.3389/fgene.2020.00047openalex-snapshot

MicroRNA-206 Regulation of Skin Pigmentation in Koi Carp (Cyprinus carpio L.)

inferredcites →https://doi.org/10.3390/ijms160921310openalex-snapshot

Gene Expression Variations of Red—White Skin Coloration in Common Carp (Cyprinus carpio)

inferredcites →https://doi.org/10.3390/ijms232012214openalex-snapshot

Cell Junction and Vesicle Trafficking-Mediated Melanosome/Melanin Transfer Are Involved in the Dynamic Transformation of Goldfish Carassius auratus Skin Color

inferredcites →https://doi.org/10.3390/molecules28031053openalex-snapshot

Anti-Melanogenic Potential of Natural and Synthetic Substances: Application in Zebrafish Model

inferredcites →https://doi.org/10.5194/aab-66-131-2023openalex-snapshot

Association analysis of melanophilin ( MLPH ) gene expression and polymorphism with plumage color in quail

inferredcites →https://doi.org/10.5897/jbsa.9000019openalex-snapshot

Nine linked SNPs found in goat melanophilin (mlph) gene

inferredcites →https://doi.org/10.7717/peerj.2843openalex-snapshot

A gene expression study of dorso-ventrally restricted pigment pattern in adult fins of Neolamprologus meeli , an African cichlid species

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/raq.70179openalex-snapshot

Epigenetic Plasticity of Fish Pigmentation Under Environmental Stress: A Gene–Environment–Epigenetic Interaction Model

inferred← citeshttps://doi.org/10.3390/ijms262010001openalex-snapshot

Integrative Methylome and Transcriptome Analysis Reveals Epigenetic Regulation of Pigmentation in Oujiang Color Common Carp

inferred← citeshttps://doi.org/10.3390/proteomes14010006openalex-snapshot

Evaluating the Impact of Two Different Diets on the Protein Profile of the Brain, Liver, and Intestine of the Barramundi

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