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Genetic footprints of adaptive divergence in the bracovirus of Cotesia sesamiae identified by targeted resequencing

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Outgoing claims: the papers this work cites, builds on, or argues with.

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The Cotesia sesamiae story: insight into host-range evolution in a Hymenoptera parasitoid and implication for its use in biological control programs
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The Biology and Genomics of Polydnaviruses
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Importance of contact chemical cues in host recognition and acceptance by the braconid larval endoparasitoids Cotesia sesamiae and Cotesia flavipes
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Point mutagenesis reveals that a coiled-coil motif of CrV1 is required for entry to hemocytes to suppress cellular immune responses
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Poxviruses Deploy Genomic Accordions to Adapt Rapidly against Host Antiviral Defenses
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Origin and evolution of symbiotic viruses associated with parasitoid wasps
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Differential expression of the CrV1 haemocyte inactivation-associated polydnavirus gene in the African maize stem borer Busseola fusca (Fuller) parasitized by two biotypes of the endoparasitoid Cotesia sesamiae (Cameron)
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Foreign DNA acquisition by invertebrate genomes
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Mutualistic viruses and the heteronomy of life
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The genomics of speciation-with-gene-flow
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Specialist versus generalist insect herbivores and plant defense
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Phylogenetics and genetic diversity of the Cotesia flavipes complex of parasitoid wasps (Hymenoptera: Braconidae), biological control agents of lepidopteran stemborers
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Sympatric speciation in animals: the ugly duckling grows up
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A coiled-coil region of an insect immune suppressor protein is involved in binding and uptake by hemocytes
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Pattern and Process in Host-Parasitoid Interactions
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Biosystematics of theCotesia flavipesspecies complex (Hymenoptera: Braconidae): morphometrics of selected allopatric populations
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Notes on Apanteles sesamiae, Cam., a Parasite of the Maize Stalk-borer (Busseola fusca, Fuller) in South Africa
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The recurrent domestication of viruses: major evolutionary transitions in parasitic wasps
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Effects of Calyx Fluid from a Population of Cotesia sesamiae (Cameron) (Hymenoptera: Braconidae) on the Immune Response of its Host Busseola fusca Fuller (Lepidoptera: Noctuidae)
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Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis
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Genome sequencing in microfabricated high-density picolitre reactors
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
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Target-enrichment strategies for next-generation sequencing
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Fast gapped-read alignment with Bowtie 2
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Rapid evolution and specialization following host colonization in a yucca moth
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A continuum of genetic divergence from sympatric host races to species in the pea aphid complex
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Paleozoic origin of insect large dsDNA viruses
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The butterfly plant arms-race escalated by gene and genome duplications
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The braconid and ichneumonid parasitoid wasps: biology, systematics, evolution and ecology
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Geographic distribution and host plant ranges of East African noctuid stem borers
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Release and establishment of Cotesia flavipes Cameron (Hymenoptera: Braconidae) an exotic parasitoid of Chilo partellus (Swinhoe) (Lepidoptera: Crambidae) in East and Southern Africa
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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
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HyPhy: hypothesis testing using phylogenies
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The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/genetics/105.2.437openalex-snapshot
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/jee/101.3.686openalex-snapshot
Establishment of Cotesia flavipes (Hymenoptera: Braconidae) in Sugarcane Fields of Ethiopia and Origin of Founding Population
inferredcites →https://doi.org/10.1093/jhered/esn047openalex-snapshot
Evolution of a Polydnavirus Gene in Relation to Parasitoid-Host Species Immune Resistance
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot
jModelTest: Phylogenetic Model Averaging
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Likelihood ratio tests for detecting positive selection and application to primate lysozyme evolution
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Biological control and sustainable food production
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Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing
inferredcites →https://doi.org/10.1098/rstb.2011.0263openalex-snapshot
Genomic divergence during speciation: causes and consequences
inferredcites →https://doi.org/10.1098/rstb.2013.0047openalex-snapshot
Functional endogenous viral elements in the genome of the parasitoid wasp Cotesia congregata : insights into the evolutionary dynamics of bracoviruses
inferredcites →https://doi.org/10.1098/rstb.2013.0051openalex-snapshot
When parasitic wasps hijacked viruses: genomic and functional evolution of polydnaviruses
inferredcites →https://doi.org/10.1101/194084openalex-snapshot
Determinants of genetic structure of the Sub-Saharan parasitic wasp Cotesia sesamiae
inferredcites →https://doi.org/10.1111/1755-0998.12059openalex-snapshot
Targeted multiplex next‐generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics
inferredcites →https://doi.org/10.1111/eva.12260openalex-snapshot
Ongoing ecological speciation in Cotesia sesamiae, a biological control agent of cereal stem borers
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Divergent selection and heterogeneous genomic divergence
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04645.xopenalex-snapshot
Inbreeding in a natural population of the gregarious parasitoid wasp Cotesia glomerata
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04977.xopenalex-snapshot
Intraspecific specialization of the generalist parasitoid Cotesia sesamiae revealed by polyDNAvirus polymorphism and associated with different Wolbachia infection
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Endoparasitoid wasp bracovirus-mediated inhibition of hemolin function and lepidopteran host immunosuppression
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BUTTERFLIES AND PLANTS: A STUDY IN COEVOLUTION
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ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
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THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE
inferredcites →https://doi.org/10.1111/mec.12360openalex-snapshot
Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13304openalex-snapshot
Targeted capture in evolutionary and ecological genomics
inferredcites →https://doi.org/10.1111/mec.13792openalex-snapshot
Recurrent selection explains parallel evolution of genomic regions of high relative but low absolute differentiation in a ring species
inferredcites →https://doi.org/10.1111/pce.12818openalex-snapshot
Combined use of herbivore‐induced plant volatiles and sex pheromones for mate location in braconid parasitoids
inferredcites →https://doi.org/10.1126/science.1166788openalex-snapshot
Polydnaviruses of Braconid Wasps Derive from an Ancestral Nudivirus
inferredcites →https://doi.org/10.1128/jvi.00209-14openalex-snapshot
Functional Annotation of Cotesia congregata Bracovirus: Identification of Viral Genes Expressed in Parasitized Host Immune Tissues
inferredcites →https://doi.org/10.1128/jvi.06434-11openalex-snapshot
Deep Sequencing Identifies Viral and Wasp Genes with Potential Roles in Replication of Microplitis demolitor Bracovirus
inferredcites →https://doi.org/10.1146/annurev-ento-020117-043405openalex-snapshot
Systematics, Biology, and Evolution of Microgastrine Parasitoid Wasps
inferredcites →https://doi.org/10.1146/annurev.ento.51.110104.151029openalex-snapshot
EVOLUTION OF DEVELOPMENTAL STRATEGIES IN PARASITIC HYMENOPTERA
inferredcites →https://doi.org/10.1146/annurev.genet.39.073003.112240openalex-snapshot
Concerted and Birth-and-Death Evolution of Multigene Families
inferredcites →https://doi.org/10.1186/1471-2148-12-253openalex-snapshot
Evolutionary mechanisms driving the evolution of a large polydnavirus gene family coding for protein tyrosine phosphatases
inferredcites →https://doi.org/10.1303/aez.21.382openalex-snapshot
Emergence Pattern and Mating Behavior of Apanteles flavipes(CAMERON)(Hymenoptera : Braconidae)
inferredcites →https://doi.org/10.1371/journal.pgen.1005470openalex-snapshot
Recurrent Domestication by Lepidoptera of Genes from Their Parasites Mediated by Bracoviruses
inferredcites →https://doi.org/10.1371/journal.pone.0015925openalex-snapshot
PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
inferredcites →https://doi.org/10.1371/journal.pone.0064432openalex-snapshot
Adaptive Selection on Bracovirus Genomes Drives the Specialization of Cotesia Parasitoid Wasps
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Evolutionary Biology of Parasites.
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Systematics and biology of Cotesia typhae sp. n. (Hymenoptera, Braconidae, Microgastrinae), a potential biological control agent against the noctuid Mediterranean corn borer, Sesamia nonagrioides
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The Geographic Mosaic of Coevolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Low Risk on Non-Target Species of a Potential Biological Control Agent of the Mediterranean Corn Borer
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Screening and identification of viruses in termites: behavior‐regulating roles of RcBsV and RcBV
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Non-target risk assessment of Cotesia typhae, a potential biological control agent of the Mediterranean corn borer
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Parasitoid speciation and diversification
inferred← citeshttps://doi.org/10.1016/j.jinsphys.2023.104553openalex-snapshot
Hot and cold waves decrease sperm production and bias sex ratio in the parasitoid wasp Cotesia typhae (Hymenoptera, Braconidae)
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Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
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Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes
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Rep virulence genes have been recruited convergently by nudivirus-derived Virus-Like Particles and ichnoviruses of Campoplegine wasps
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Introduction: The host‐associated microbiome: Pattern, process and function
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Editorial 2019
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Quantitative trait loci involved in the reproductive success of a parasitoid wasp
inferred← citeshttps://doi.org/10.1111/mec.17509openalex-snapshot
Recurrent selection shapes the genomic landscape of differentiation between a pair of host‐specialized haplodiploids that diverged with gene flow
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Characterizing virulence differences in a parasitoid wasp through comparative transcriptomic and proteomic
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Detecting bracoviral orthologs distribution in five tsetse fly species and the housefly genomes
inferred← citeshttps://doi.org/10.3389/fevo.2018.00228openalex-snapshot
Salivary α-Amylase of Stem Borer Hosts Determines Host Recognition and Acceptance for Oviposition by Cotesia spp. (Hymenoptera, Braconidae)
inferred← citeshttps://doi.org/10.3389/fevo.2019.00020openalex-snapshot
Western European Populations of the Ichneumonid Wasp Hyposoter didymator Belong to a Single Taxon
inferred← citeshttps://doi.org/10.3389/fevo.2019.00187openalex-snapshot
The Parasitic Wasp, Cotesia congregata (Say), Consists of Two Incipient Species Isolated by Asymmetric Reproductive Incompatibility and Hybrid Inability to Overcome Host Defenses
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Evolution de symbioses virales récentes au sein de guêpes parasitoïdes Campopleginae
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