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Not just a methane source: Amazonian floodplain sediments harbour a high diversity of methanotrophs with different metabolic capabilities

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/2015gb005300openalex-snapshot

Contribution of regional sources to atmospheric methane over the Amazon Basin in 2010 and 2011

inferredcites →https://doi.org/10.1002/9781118960608.obm00127openalex-snapshot

Methanomassiliicoccales

inferredcites →https://doi.org/10.1002/hyp.1287openalex-snapshot

Exportation of organic carbon from the Amazon River and its main tributaries

inferredcites →https://doi.org/10.1002/lno.11354openalex-snapshot

Manganese/iron‐supported sulfate‐dependent anaerobic oxidation of methane by archaea in lake sediments

inferredcites →https://doi.org/10.1002/mbo3.232openalex-snapshot

Anaerobic oxidation of methane: an “active” microbial process

inferredcites →https://doi.org/10.1007/978-1-60327-853-9_9openalex-snapshot

Horizontal Gene Transfer and the Evolution of Methanogenic Pathways

inferredcites →https://doi.org/10.1007/978-3-319-74866-5_2openalex-snapshot

Diversity and Phylogeny of Described Aerobic Methanotrophs

inferredcites →https://doi.org/10.1007/978-3-662-03416-3openalex-snapshot

The Central Amazon Floodplain

inferredcites →https://doi.org/10.1007/s00248-018-1183-3openalex-snapshot

Different Recovery Processes of Soil Ammonia Oxidizers from Flooding Disturbance

inferredcites →https://doi.org/10.1007/s10533-020-00650-1openalex-snapshot

Dissolved methane concentrations and fluxes to the atmosphere from a tropical floodplain lake

inferredcites →https://doi.org/10.1007/s13157-011-0190-7openalex-snapshot

A Classification of Major Naturally-Occurring Amazonian Lowland Wetlands

inferredcites →https://doi.org/10.1007/s13157-014-0516-3openalex-snapshot

Modeling Methane Emissions from Amazon Floodplain Ecosystems

inferredcites →https://doi.org/10.1007/s13157-015-0666-yopenalex-snapshot

Wetlands of the Lowland Amazon Basin: Extent, Vegetative Cover, and Dual-season Inundated Area as Mapped with JERS-1 Synthetic Aperture Radar

inferredcites →https://doi.org/10.1016/j.chemosphere.2020.126263openalex-snapshot

Methane emission suppression in flooded soil from Amazonia

inferredcites →https://doi.org/10.1016/j.csbj.2021.01.013openalex-snapshot

Ecological distribution and potential roles of Woesearchaeota in anaerobic biogeochemical cycling unveiled by genomic analysis

inferredcites →https://doi.org/10.1016/j.cub.2018.05.021openalex-snapshot

Methanogenesis

inferredcites →https://doi.org/10.1016/j.envint.2020.106131openalex-snapshot

Belowground changes to community structure alter methane-cycling dynamics in Amazonia

inferredcites →https://doi.org/10.1016/j.femsec.2004.09.007openalex-snapshot

Comparing field and microcosm experiments: a case study on methano- and methylo-trophic bacteria in paddy soil

inferredcites →https://doi.org/10.1016/j.heliyon.2020.e03830openalex-snapshot

Robust DNA protocols for tropical soils

inferredcites →https://doi.org/10.1016/j.scitotenv.2016.07.182openalex-snapshot

Methane production, oxidation and mitigation: A mechanistic understanding and comprehensive evaluation of influencing factors

inferredcites →https://doi.org/10.1023/a:1006326018597openalex-snapshot

Methane turnover in exposed sediments of an Amazon floodplain lake

inferredcites →https://doi.org/10.1038/ismej.2015.262openalex-snapshot

NC10 bacteria in marine oxygen minimum zones

inferredcites →https://doi.org/10.1038/nature08883openalex-snapshot

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

inferredcites →https://doi.org/10.1038/nature12375openalex-snapshot

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

inferredcites →https://doi.org/10.1038/nature13164openalex-snapshot

Methane fluxes show consistent temperature dependence across microbial to ecosystem scales

inferredcites →https://doi.org/10.1038/nature24639openalex-snapshot

Large emissions from floodplain trees close the Amazon methane budget

inferredcites →https://doi.org/10.1038/nclimate2067openalex-snapshot

Global warming and changes in drought

inferredcites →https://doi.org/10.1038/nclimate2222openalex-snapshot

Greenhouse gas production in low-latitude lake sediments responds strongly to warming

inferredcites →https://doi.org/10.1038/nmeth.3869openalex-snapshot

DADA2: High-resolution sample inference from Illumina amplicon data

inferredcites →https://doi.org/10.1038/nmicrobiol.2016.35openalex-snapshot

Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments

inferredcites →https://doi.org/10.1038/s41396-020-0590-xopenalex-snapshot

Anaerobic methane oxidation coupled to manganese reduction by members of the Methanoperedenaceae

inferredcites →https://doi.org/10.1038/s41467-017-01753-4openalex-snapshot

Methanogenesis in oxygenated soils is a substantial fraction of wetland methane emissions

inferredcites →https://doi.org/10.1038/s41522-020-00160-wopenalex-snapshot

Analysis of microbial compositions: a review of normalization and differential abundance analysis

inferredcites →https://doi.org/10.1038/s41558-020-0824-yopenalex-snapshot

Disproportionate increase in freshwater methane emissions induced by experimental warming

inferredcites →https://doi.org/10.1038/s41579-018-0136-7openalex-snapshot

An evolving view of methane metabolism in the Archaea

inferredcites →https://doi.org/10.1038/srep25647openalex-snapshot

Comparison of community structures of Candidatus Methylomirabilis oxyfera-like bacteria of NC10 phylum in different freshwater habitats

inferredcites →https://doi.org/10.1073/pnas.1000080107openalex-snapshot

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

inferredcites →https://doi.org/10.1073/pnas.1220608110openalex-snapshot

Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities

inferredcites →https://doi.org/10.1088/1748-9326/ab2726openalex-snapshot

Significant feedbacks of wetland methane release on climate change and the causes of their uncertainty

inferredcites →https://doi.org/10.1093/nar/gks808openalex-snapshot

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

inferredcites →https://doi.org/10.1099/00221287-148-11-3521openalex-snapshot

The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill b bThe GenBank accession numbers for the mcrA sequences reported in this paper are AF414034–AF414051 (see Fig. 2) and AF414007–AF414033 (environmental isolates in Fig. 3).

inferredcites →https://doi.org/10.1099/ijsem.0.001167openalex-snapshot

Emended description of the family Beijerinckiaceae and transfer of the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov.

inferredcites →https://doi.org/10.1099/mic.0.000977openalex-snapshot

Facultative methanotrophs – diversity, genetics, molecular ecology and biotechnological potential: a mini-review

inferredcites →https://doi.org/10.1111/1462-2920.12267openalex-snapshot

Response of the methanogenic microbial communities in A mazonian oxbow lake sediments to desiccation stress

inferredcites →https://doi.org/10.1111/1462-2920.13491openalex-snapshot

Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types

inferredcites →https://doi.org/10.1111/1462-2920.14535openalex-snapshot

Structure, function and resilience to desiccation of methanogenic microbial communities in temporarily inundated soils of the Amazon rainforest (Cunia Reserve, Rondonia)

inferredcites →https://doi.org/10.1111/1758-2229.12487openalex-snapshot

Nitrate‐ and nitrite‐dependent anaerobic oxidation of methane

inferredcites →https://doi.org/10.1111/ele.12206openalex-snapshot

Climate change alters ecological strategies of soil bacteria

inferredcites →https://doi.org/10.1111/gcb.12131openalex-snapshot

Methane emissions from wetlands: biogeochemical, microbial, and modeling perspectives from local to global scales

inferredcites →https://doi.org/10.1111/gcb.12646openalex-snapshot

Methane emissions from Amazonian Rivers and their contribution to the global methane budget

inferredcites →https://doi.org/10.1111/gcb.13169openalex-snapshot

Oxidative mitigation of aquatic methane emissions in large Amazonian rivers

inferredcites →https://doi.org/10.1111/j.1574-6941.2010.01018.xopenalex-snapshot

Regulation of microbial methane production and oxidation by intermittent drainage in rice field soil

inferredcites →https://doi.org/10.1111/j.1600-0889.2007.00322.xopenalex-snapshot

Spatial and seasonal variations in the stable carbon isotopic composition of methane in stream sediments of eastern Amazonia

inferredcites →https://doi.org/10.1111/j.1758-2229.2009.00038.xopenalex-snapshot

The global methane cycle: recent advances in understanding the microbial processes involved

inferredcites →https://doi.org/10.1111/j.1758-2229.2011.00322.xopenalex-snapshot

Methane source strength and energy flow shape methanotrophic communities in oxygen–methane counter‐gradients

inferredcites →https://doi.org/10.1111/j.1758-2229.2012.00370.xopenalex-snapshot

Conceptualizing functional traits and ecological characteristics of methane‐oxidizing bacteria as life strategies

inferredcites →https://doi.org/10.1111/mec.12786openalex-snapshot

Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities

inferredcites →https://doi.org/10.1126/science.1156401openalex-snapshot

Spreading Dead Zones and Consequences for Marine Ecosystems

inferredcites →https://doi.org/10.1126/science.aac7745openalex-snapshot

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

inferredcites →https://doi.org/10.1127/0941-2948/2013/0507openalex-snapshot

Köppen's climate classification map for Brazil

inferredcites →https://doi.org/10.1128/aem.70.1.483-489.2004openalex-snapshot

Molecular and Metabolic Characterization of Cold-Tolerant Alpine Soil Pseudomonas Sensu Stricto

inferredcites →https://doi.org/10.1128/jb.01424-07openalex-snapshot

Mutagenesis of the C1 Oxidation Pathway in Methanosarcina barkeri : New Insights into the Mtr/Mer Bypass Pathway

inferredcites →https://doi.org/10.1128/jb.187.13.4665-4670.2005openalex-snapshot

Methylocella Species Are Facultatively Methanotrophic

inferredcites →https://doi.org/10.1186/s13068-018-1162-4openalex-snapshot

Characterization of Bathyarchaeota genomes assembled from metagenomes of biofilms residing in mesophilic and thermophilic biogas reactors

inferredcites →https://doi.org/10.1186/s40168-018-0488-2openalex-snapshot

Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages

inferredcites →https://doi.org/10.2136/sssaj1978.03615995004200030009xopenalex-snapshot

Development of a DTPA Soil Test for Zinc, Iron, Manganese, and Copper

inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot

vegan: Community Ecology Package

inferredcites →https://doi.org/10.3389/fmicb.2015.01057openalex-snapshot

Specific microbial gene abundances and soil parameters contribute to C, N, and greenhouse gas process rates after land use change in Southern Amazonian Soils

inferredcites →https://doi.org/10.3389/fmicb.2015.01346openalex-snapshot

Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker

inferredcites →https://doi.org/10.3389/fmicb.2018.01322openalex-snapshot

Electron Bifurcation and Confurcation in Methanogenesis and Reverse Methanogenesis

inferredcites →https://doi.org/10.3390/d2071026openalex-snapshot

Molecular Characterization of the Archaeal Community in an Amazonian Wetland Soil and Culture-Dependent Isolation of Methanogenic Archaea

inferredcites →https://doi.org/10.4319/lo.2010.55.2.0689openalex-snapshot

Methanogenic pathway, 13C isotope fractionation, and archaeal community composition in the sediment of two clear‐water lakes of Amazonia

inferredcites →https://doi.org/10.5194/bg-11-1519-2014openalex-snapshot

Methane emissions from floodplains in the Amazon Basin: challenges in developing a process-based model for global applications

inferredcites →https://doi.org/10.5772/intechopen.90247openalex-snapshot

Methane, Microbes and Models in Amazonian Floodplains: State of the Art and Perspectives

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4772529openalex-extracted

Greenhouse Gas Fluxes in a Managed Forest in the Amazon Estuary

inferred← citeshttps://doi.org/10.1007/978-3-031-66822-7_8openalex-snapshot

Amazonian Aquatic Food Webs, Their Variation, and Vulnerability in Regard to Climate and Land-Use Changes

inferred← citeshttps://doi.org/10.1007/s00253-023-12572-7openalex-snapshot

Characterizing sediment functional traits and ecological consequences respond to increasing antibiotic pollution

inferred← citeshttps://doi.org/10.1007/s10533-021-00846-zopenalex-snapshot

Active methane processing microbes and the disproportionate role of NC10 phylum in methane mitigation in Amazonian floodplains

inferred← citeshttps://doi.org/10.1007/s10533-025-01254-3openalex-snapshot

Methane (CH4) oxidation in flooded forests of the amazon basin

inferred← citeshttps://doi.org/10.1016/b978-0-12-822701-5.00027-6openalex-snapshot

Sediments and Microbiomes

inferred← citeshttps://doi.org/10.1016/b978-0-443-15726-4.00026-8openalex-snapshot

Impacts on fish and microbial communities occurring in the Amazon River Basin

inferred← citeshttps://doi.org/10.1016/j.agrformet.2025.110979openalex-snapshot

Greenhouse gas fluxes in a managed floodplain forest in the Amazon estuary

inferred← citeshttps://doi.org/10.1016/j.apgeochem.2022.105467openalex-snapshot

Geochemistry of organic matter by multi-proxy analyses and temperature sensitivity of methanogenesis in clearwater Amazonian lake sediments

inferred← citeshttps://doi.org/10.1016/j.ecss.2025.109124openalex-snapshot

Microbial communities and soil greenhouse gas fluxes from subtropical tidal and supratidal wetlands

inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.118771openalex-snapshot

Mechanism of microbial regulation on methane metabolism in saline–alkali soils based on metagenomics analysis

inferred← citeshttps://doi.org/10.1038/s41561-025-01848-4openalex-snapshot

Mangrove sediment carbon burial offset by methane emissions from mangrove tree stems

inferred← citeshttps://doi.org/10.1038/s43247-024-01635-wopenalex-snapshot

Wetland hydrological dynamics and methane emissions

inferred← citeshttps://doi.org/10.1111/1462-2920.70060openalex-snapshot

Metagenome‐Assembled Genomes for Oligotrophic Nitrifiers From a Mountainous Gravelbed Floodplain

inferred← citeshttps://doi.org/10.1111/fwb.70199openalex-snapshot

Response of Carbon, Nitrogen and Sulfur Coupling Characteristics to Microbially‐Driven Hydro‐Environmental Fluctuations in a Typical Floodplain Lake System

inferred← citeshttps://doi.org/10.1126/sciadv.aeb8250openalex-snapshot

Methane oxidation in African and European rivers depends on stream size and wetland connectivity

inferred← citeshttps://doi.org/10.1128/aem.00309-24openalex-snapshot

The impact of land-use changes and management intensification on bacterial communities in the last decade: a review

inferred← citeshttps://doi.org/10.1128/mra.00432-22openalex-snapshot

Metagenomes from Eastern Brazilian Amazonian Floodplains in the Wet and Dry Seasons

inferred← citeshttps://doi.org/10.1128/msystems.00314-24openalex-snapshot

Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA

inferred← citeshttps://doi.org/10.1128/msystems.00829-25openalex-snapshot

Floodplain nitrifiers harbor the genetic potential for utilizing a wide range of organic nitrogen compounds

inferred← citeshttps://doi.org/10.11606/d.64.2023.tde-04092023-150624openalex-snapshot

O feedback planta-solo e suas implicações na restauração ecológica na transição Mata Atlântica-Cerrado

inferred← citeshttps://doi.org/10.1186/s40793-024-00596-zopenalex-snapshot

Methane-cycling microbial communities from Amazon floodplains and upland forests respond differently to simulated climate change scenarios

inferred← citeshttps://doi.org/10.3389/fenvs.2022.866082openalex-snapshot

Challenges Regionalizing Methane Emissions Using Aquatic Environments in the Amazon Basin as Examples

inferred← citeshttps://doi.org/10.3389/fmicb.2022.913453openalex-snapshot

Molecular evidence for stimulation of methane oxidation in Amazonian floodplains by ammonia-oxidizing communities

inferred← citeshttps://doi.org/10.3390/microorganisms10091747openalex-snapshot

Insights into the Genomic Potential of a Methylocystis sp. from Amazonian Floodplain Sediments

inferred← citeshttps://doi.org/10.6084/m9.figshare.26322624openalex-snapshot

Additional file 1 of Methane-cycling microbial communities from Amazon floodplains and upland forests respond differently to simulated climate change scenarios

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