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Inhibition of DNA demethylation enhances plant tolerance to cadmium toxicity by improving iron nutrition

https://doi.org/10.1111/pce.13670
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Iron supply prevents Cd uptake in Arabidopsis by inhibiting IRT1 expression and favoring competition between Fe and Cd uptake
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Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome
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Cadmium-induced genomic instability in Arabidopsis: Molecular toxicological biomarkers for early diagnosis of cadmium stress
inferredcites →https://doi.org/10.1016/j.geoderma.2006.08.024openalex-snapshot
Cadmium in plants on polluted soils: Effects of soil factors, hyperaccumulation, and amendments
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A review of heavy metal contaminations in urban soils, urban road dusts and agricultural soils from China
inferredcites →https://doi.org/10.1016/j.plaphy.2011.10.016openalex-snapshot
Selenium and spermine alleviate cadmium induced toxicity in the red seaweed Gracilaria dura by regulating antioxidants and DNA methylation
inferredcites →https://doi.org/10.1016/j.scitotenv.2018.01.245openalex-snapshot
Sulfide alleviates cadmium toxicity in Arabidopsis plants by altering the chemical form and the subcellular distribution of cadmium
inferredcites →https://doi.org/10.1016/j.tox.2007.10.028openalex-snapshot
Effects of long-term low-dose cadmium exposure on genomic DNA methylation in human embryo lung fibroblast cells
inferredcites →https://doi.org/10.1016/j.tplants.2012.08.003openalex-snapshot
Plant science: the key to preventing slow cadmium poisoning
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ROS1, a Repressor of Transcriptional Gene Silencing in Arabidopsis, Encodes a DNA Glycosylase/Lyase
inferredcites →https://doi.org/10.1016/s1097-2765(00)80425-6openalex-snapshot
A Novel Duodenal Iron-Regulated Transporter, IREG1, Implicated in the Basolateral Transfer of Iron to the Circulation
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Phenomenological Theory of Ion Solvation. Effective Radii of Hydrated Ions
inferredcites →https://doi.org/10.1038/cr.2008.26openalex-snapshot
FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis
inferredcites →https://doi.org/10.1038/nature06745openalex-snapshot
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
inferredcites →https://doi.org/10.1038/ncomms5062openalex-snapshot
Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation
inferredcites →https://doi.org/10.1038/nplants.2016.169openalex-snapshot
The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications
inferredcites →https://doi.org/10.1038/nplants.2016.58openalex-snapshot
Unique cell-type-specific patterns of DNA methylation in the root meristem
inferredcites →https://doi.org/10.1038/nrg2165-c3openalex-snapshot
A unified classification system for eukaryotic transposable elements should reflect their phylogeny
inferredcites →https://doi.org/10.1038/nrg2719openalex-snapshot
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inferredcites →https://doi.org/10.1038/s41580-018-0016-zopenalex-snapshot
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inferredcites →https://doi.org/10.1073/pnas.0701861104openalex-snapshot
DNA demethylation in the Arabidopsis genome
inferredcites →https://doi.org/10.1073/pnas.1209329109openalex-snapshot
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inferredcites →https://doi.org/10.1073/pnas.1522301112openalex-snapshot
Methylome analysis reveals an important role for epigenetic changes in the regulation of the Arabidopsis response to phosphate starvation
inferredcites →https://doi.org/10.1074/jbc.m601062200openalex-snapshot
AtIREG2 Encodes a Tonoplast Transport Protein Involved in Iron-dependent Nickel Detoxification in Arabidopsis thaliana Roots
inferredcites →https://doi.org/10.1080/07352689.2014.903747openalex-snapshot
Cellular Mechanisms in Higher Plants Governing Tolerance to Cadmium Toxicity
inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-snapshot
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
inferredcites →https://doi.org/10.1093/annonc/mdf314openalex-snapshot
DNA methyltransferase inhibitors—state of the art
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-snapshot
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/bioinformatics/bts635openalex-snapshot
STAR: ultrafast universal RNA-seq aligner
inferredcites →https://doi.org/10.1093/bioinformatics/btu393openalex-snapshot
circlize implements and enhances circular visualization in R
inferredcites →https://doi.org/10.1093/genetics/163.3.1109openalex-snapshot
Arabidopsis MET1 Cytosine Methyltransferase Mutants
inferredcites →https://doi.org/10.1093/jxb/erq281openalex-snapshot
Root responses to cadmium in the rhizosphere: a review
inferredcites →https://doi.org/10.1093/jxb/ers036openalex-snapshot
Iron uptake system mediates nitrate-facilitated cadmium accumulation in tomato (Solanum lycopersicum) plants
inferredcites →https://doi.org/10.1093/mp/sss089openalex-snapshot
Requirement and Functional Redundancy of Ib Subgroup bHLH Proteins for Iron Deficiency Responses and Uptake in Arabidopsis thaliana
inferredcites →https://doi.org/10.1093/pcp/pcu125openalex-snapshot
Epigenetic Memory for Stress Response and Adaptation in Plants
inferredcites →https://doi.org/10.1104/pp.108.133348openalex-snapshot
Nitric Oxide Contributes to Cadmium Toxicity in Arabidopsis by Promoting Cadmium Accumulation in Roots and by Up-Regulating Genes Related to Iron Uptake
inferredcites →https://doi.org/10.1104/pp.111.190983openalex-snapshot
Co-Overexpression FIT with AtbHLH38 or AtbHLH39 in Arabidopsis-Enhanced Cadmium Tolerance via Increased Cadmium Sequestration in Roots and Improved Iron Homeostasis of Shoots
inferredcites →https://doi.org/10.1104/pp.114.243766openalex-snapshot
Inhibition of Nitrate Transporter 1.1-Controlled Nitrate Uptake Reduces Cadmium Uptake in Arabidopsis
inferredcites →https://doi.org/10.1104/pp.17.00744openalex-snapshot
The Arabidopsis DNA Methylome Is Stable under Transgenerational Drought Stress
inferredcites →https://doi.org/10.1104/pp.17.01188openalex-snapshot
Deubiquitinating Enzyme OTU5 Contributes to DNA Methylation Patterns and Is Critical for Phosphate Nutrition Signals
inferredcites →https://doi.org/10.1104/pp.18.00651openalex-snapshot
Retrotransposon Insertion and DNA Methylation Regulate Aluminum Tolerance in European Barley Accessions
inferredcites →https://doi.org/10.1105/tpc.001388openalex-snapshot
IRT1, an Arabidopsis Transporter Essential for Iron Uptake from the Soil and for Plant Growth
inferredcites →https://doi.org/10.1105/tpc.110.074096openalex-snapshot
The bHLH Transcription Factor POPEYE Regulates Response to Iron Deficiency in Arabidopsis Roots
inferredcites →https://doi.org/10.1111/j.1365-3040.2005.01479.xopenalex-snapshot
Comparative transcriptome analysis of toxic metal responses inArabidopsis thalianaand the Cd2+‐hypertolerant facultative metallophyteArabidopsis halleri
inferredcites →https://doi.org/10.1111/j.1365-3040.2007.01760.xopenalex-snapshot
A comparison of ammonium, nitrate and proton net fluxes along seedling roots of Douglas‐fir and lodgepole pine grown and measured with different inorganic nitrogen sources
inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02746.xopenalex-snapshot
The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply
inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03410.xopenalex-snapshot
Identification of high levels of phytochelatins, glutathione and cadmium in the phloem sap of Brassica napus . A role for thiol‐peptides in the long‐distance transport of cadmium and the effect of cadmium on iron translocation
inferredcites →https://doi.org/10.1111/j.1744-7909.2008.00737.xopenalex-snapshot
How Plants Cope with Cadmium: Staking All on Metabolism and Gene Expression
inferredcites →https://doi.org/10.1111/jipb.12767openalex-snapshot
A methylated‐DNA‐binding complex required for plant development mediates transcriptional activation of promoter methylated genes
inferredcites →https://doi.org/10.1111/jipb.12768openalex-snapshot
A group of SUVH methyl‐DNA binding proteins regulate expression of the DNA demethylase ROS1 in Arabidopsis
inferredcites →https://doi.org/10.1111/jipb.12777openalex-snapshot
A SUVH‐DNAJ/SDJ protein complex activates the expression of promoter‐methylated genes in Arabidopsis
inferredcites →https://doi.org/10.1111/nph.13892openalex-snapshot
Alleviation of proton toxicity by nitrate uptake specifically depends on nitrate transporter 1.1 in Arabidopsis
inferredcites →https://doi.org/10.1111/pce.12793openalex-snapshot
Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium
inferredcites →https://doi.org/10.1126/science.1059745openalex-snapshot
Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation
inferredcites →https://doi.org/10.1146/annurev-genet-102108-134205openalex-snapshot
Active DNA Demethylation Mediated by DNA Glycosylases
inferredcites →https://doi.org/10.1158/1535-7163.mct-08-0743openalex-snapshot
Human concentrative nucleoside transporter 1-mediated uptake of 5-azacytidine enhances DNA demethylation
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1746-4811-10-18openalex-snapshot
Protocol: a beginner’s guide to the analysis of RNA-directed DNA methylation in plants
inferredcites →https://doi.org/10.1186/gb-2012-13-10-r87openalex-snapshot
methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles
inferredcites →https://doi.org/10.1186/preaccept-1557064081219548openalex-snapshot
DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis
inferredcites →https://doi.org/10.1186/s12284-016-0112-7openalex-snapshot
Comparison on cellular mechanisms of iron and cadmium accumulation in rice: prospects for cultivating Fe-rich but Cd-free rice
inferredcites →https://doi.org/10.1186/s13059-017-1263-6openalex-snapshot
Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants
inferredcites →https://doi.org/10.1289/ehp.10207openalex-snapshot
Tumor Suppressor Gene Inactivation during Cadmium-Induced Malignant Transformation of Human Prostate Cells Correlates with Overexpression of de Novo DNA Methyltransferase
inferredcites →https://doi.org/10.1371/journal.pgen.1006141openalex-snapshot
Limited Contribution of DNA Methylation Variation to Expression Regulation in Arabidopsis thaliana
inferredcites →https://doi.org/10.1534/g3.116.030262openalex-snapshot
A Comparative Analysis of 5-Azacytidine- and Zebularine-Induced DNA Demethylation
inferredcites →https://doi.org/10.17221/94/2018-ppsopenalex-snapshot
Effect of 5-azacytidine induced DNA demethylation on abiotic stress tolerance in Arabidopsis thaliana
inferredcites →https://doi.org/10.25405/ncl.34284429openalex-snapshot
Reversal of drug resistance in human tumor xenografts by 2'-deoxy-5-azacytidine-induced demethylation of the hMLH1 gene promoter
inferredcites →https://doi.org/10.3389/fpls.2014.00213openalex-snapshot
Comparative transcriptome analysis of the metal hyperaccumulator Noccaea caerulescens
inferredcites →https://doi.org/10.3389/fpls.2014.00721openalex-snapshot
Exogenous abscisic acid application decreases cadmium accumulation in Arabidopsis plants, which is associated with the inhibition of IRT1-mediated cadmium uptake
inferredcites →https://doi.org/10.7554/elife.09343openalex-snapshot
Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements
inferredcites →https://doi.org/10.7554/elife.13546openalex-snapshot
Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.3389/fpls.2022.959840openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fpls.2023.1278185openalex-snapshot
The role of epigenetic and epitranscriptomic modifications in plants exposed to non-essential metals
inferred← citeshttps://doi.org/10.3389/fpls.2024.1358673openalex-snapshot
Alfalfa MsbHLH115 confers tolerance to cadmium stress through activating the iron deficiency response in Arabidopsis thaliana
inferred← citeshttps://doi.org/10.3390/agronomy12081952openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/epigenomes9040043openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms22137046openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms24054378openalex-snapshot
Transcriptional Regulatory Network of Plant Cadmium Stress Response
inferred← citeshttps://doi.org/10.3390/ijms252011026openalex-snapshot
SSA4 Mediates Cd Tolerance via Activation of the Cis Element of VHS1 in Yeast and Enhances Cd Tolerance in Chinese Cabbage
inferred← citeshttps://doi.org/10.3390/plants10010178openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/plants12183195openalex-snapshot
Epigenetic Control of Plant Response to Heavy Metals
inferred← citeshttps://doi.org/10.3390/plants13192700openalex-snapshot
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inferred← citeshttps://doi.org/10.4018/979-8-3693-8648-4.ch011openalex-snapshot
Epigenetic Regulation and Plant Adaptation to Environmental Stress
inferred← citeshttps://doi.org/10.64898/2026.09.25.754583openalex-snapshot
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