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Comprehensive Analysis of Epigenetic Modifications in Alfalfa Under Cadmium Stress

https://doi.org/10.2139/ssrn.4863224
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mRNA Traffic Control Reviewed: N6‐Methyladenosine (m6A) Takes the Driver's Seat
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Arabidopsis DEMETER-LIKE proteins DML2 and DML3 are required for appropriate distribution of DNA methylation marks
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Chromatin Modifications and Their Function
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5′ UTR m6A Promotes Cap-Independent Translation
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Response and intraspecific differences in nitrogen metabolism of alfalfa (Medicago sativa L.) under cadmium stress
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Cadmium and/or copper excess induce interdependent metal accumulation, DNA methylation, induction of metal chelators and antioxidant defences in the seagrass Zostera marina
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Difference in Cd2+ Flux Around the Root Tips of Different Soybean (Glycine Max L.) Cultivars and Physiological Response Under Mild Cadmium Stress
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Methane control of cadmium tolerance in alfalfa roots requires hydrogen sulfide
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Glutamate alleviates cadmium toxicity in rice via suppressing cadmium uptake and translocation
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IRT1 and ZIP2 were involved in exogenous hydrogen-rich water-reduced cadmium accumulation in Brassica chinensis and Arabidopsis thaliana
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Transcriptome-wide m6A methylation profile reveals regulatory networks in roots of barley under cadmium stress
inferredcites →https://doi.org/10.1016/j.jhazmat.2022.129843openalex-extracted
Changes in the m6A RNA methylome accompany the promotion of soybean root growth by rhizobia under cadmium stress
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ALKBH5 Is a Mammalian RNA Demethylase that Impacts RNA Metabolism and Mouse Fertility
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Epigenetic Modifications of mRNA and DNA in Plants
inferredcites →https://doi.org/10.1016/j.molp.2020.07.003openalex-extracted
The Chromosome-Level Genome Sequence of the Autotetraploid Alfalfa and Resequencing of Core Germplasms Provide Genomic Resources for Alfalfa Research
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The pattern of DNA methylation alteration, and its association with the expression changes of non-coding RNAs and mRNAs in Moso bamboo under abiotic stress
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A protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package
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Modern epigenetics methods in biological research
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DNA methylation methods: Global DNA methylation and methylomic analyses
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Plant DNA methyltransferases
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RNA‐directed DNA methylation and plant development require an IWR1‐type transcription factor
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Epigenetics and gene expression
inferredcites →https://doi.org/10.1038/nature12730openalex-extracted
N6-methyladenosine-dependent regulation of messenger RNA stability
inferredcites →https://doi.org/10.1038/nature20577openalex-extracted
m6A potentiates Sxl alternative pre-mRNA splicing for robust Drosophila sex determination
inferredcites →https://doi.org/10.1038/nbt.3122openalex-extracted
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
inferredcites →https://doi.org/10.1038/nchembio.687openalex-extracted
N6-Methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO
inferredcites →https://doi.org/10.1038/ncomms6630openalex-extracted
Unique features of the m6A methylome in Arabidopsis thaliana
inferredcites →https://doi.org/10.1038/ng1089openalex-extracted
Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
inferredcites →https://doi.org/10.1038/nmeth.3317openalex-extracted
HISAT: a fast spliced aligner with low memory requirements
inferredcites →https://doi.org/10.1038/npp.2012.112openalex-extracted
DNA Methylation and Its Basic Function
inferredcites →https://doi.org/10.1038/nrg3683openalex-extracted
RNA-directed DNA methylation: an epigenetic pathway of increasing complexity
inferredcites →https://doi.org/10.1038/nrg3724openalex-extracted
Gene expression regulation mediated through reversible m6A RNA methylation
inferredcites →https://doi.org/10.1038/s41467-019-09496-0openalex-extracted
RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs
inferredcites →https://doi.org/10.1038/s41467-022-28940-2openalex-extracted
DNA methylation-free Arabidopsis reveals crucial roles of DNA methylation in regulating gene expression and development
inferredcites →https://doi.org/10.1038/s41580-018-0016-zopenalex-extracted
Dynamics and function of DNA methylation in plants
inferredcites →https://doi.org/10.1038/s41588-022-01173-1openalex-extracted
RNA m6A regulates transcription via DNA demethylation and chromatin accessibility
inferredcites →https://doi.org/10.1042/ebc20190032openalex-extracted
Establishment, maintenance, and biological roles of non-CG methylation in plants
inferredcites →https://doi.org/10.1073/pnas.162371599openalex-extracted
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
inferredcites →https://doi.org/10.1073/pnas.2003733117openalex-extracted
mRNA adenosine methylase (MTA) deposits m 6 A on pri-miRNAs to modulate miRNA biogenesis in Arabidopsis thaliana
inferredcites →https://doi.org/10.1073/pnas.2026806118openalex-extracted
The DME demethylase regulates sporophyte gene expression, cell proliferation, differentiation, and meristem resurrection
inferredcites →https://doi.org/10.1080/13102818.2021.1980107openalex-extracted
Effects of cadmium stress on DNA methylation in soybean
inferredcites →https://doi.org/10.1093/bioinformatics/btr167openalex-extracted
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
inferredcites →https://doi.org/10.1093/bioinformatics/btt656openalex-extracted
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
inferredcites →https://doi.org/10.1093/dnares/dsac033openalex-extracted
A contiguous de novo genome assembly of sugar beet EL10 ( Beta vulgaris L.)
inferredcites →https://doi.org/10.1093/plphys/kiad625openalex-extracted
RNA m6A modification facilitates DNA methylation during maize kernel development
inferredcites →https://doi.org/10.1104/pp.108.118851openalex-extracted
Manganese Efficiency in Barley: Identification and Characterization of the Metal Ion Transporter HvIRT1
inferredcites →https://doi.org/10.1104/pp.113.233312openalex-extracted
Differential Methylation during Maize Leaf Growth Targets Developmentally Regulated Genes
inferredcites →https://doi.org/10.1104/pp.16.01189openalex-extracted
The HvNramp5 Transporter Mediates Uptake of Cadmium and Manganese, But Not Iron
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MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor
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Specific hypomethylation of DNA is induced by heavy metals in white clover and industrial hemp
inferredcites →https://doi.org/10.1111/jipb.12901openalex-extracted
Epigenetic regulation in plant abiotic stress responses
inferredcites →https://doi.org/10.1111/jipb.13172openalex-extracted
A global alfalfa diversity panel reveals genomic selection signatures in Chinese varieties and genomic associations with root development
inferredcites →https://doi.org/10.1111/nph.13512openalex-extracted
Genome‐wide association mapping of cadmium accumulation in different organs of barley
inferredcites →https://doi.org/10.1111/nph.14586openalex-extracted
Identification of factors required for m 6 A mRNA methylation in Arabidopsis reveals a role for the conserved E3 ubiquitin ligase HAKAI
inferredcites →https://doi.org/10.1111/pbi.13149openalex-extracted
N6‐methyladenosine regulatory machinery in plants: composition, function and evolution
inferredcites →https://doi.org/10.1111/pce.12793openalex-extracted
Variation of DNA methylation patterns associated with gene expression in rice (Oryza sativa) exposed to cadmium
inferredcites →https://doi.org/10.1111/pce.13670openalex-extracted
Inhibition of DNA demethylation enhances plant tolerance to cadmium toxicity by improving iron nutrition
inferredcites →https://doi.org/10.1111/tpj.15174openalex-extracted
Whole‐genome characterization of chronological age‐associated changes in methylome and circular RNAs in moso bamboo (Phyllostachys edulis) from vegetative to floral growth
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Toxic Heavy Metal and Metalloid Accumulation in Crop Plants and Foods
inferredcites →https://doi.org/10.1186/s12870-019-1899-3openalex-extracted
OsZIP1 functions as a metal efflux transporter limiting excess zinc, copper and cadmium accumulation in rice
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-extracted
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1371/journal.pgen.1009034openalex-extracted
RNA-directed DNA Methylation
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Cadmium toxicity: effects on human reproduction and fertility
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Cadmium and Plant Development: An Agony from Seed to Seed
inferredcites →https://doi.org/10.3390/ijms20205089openalex-extracted
The Methylation Patterns and Transcriptional Responses to Chilling Stress at the Seedling Stage in Rice
inferredcites →https://doi.org/10.3390/ijms22137046openalex-extracted
The Relationship between Cadmium Toxicity and the Modulation of Epigenetic Traits in Plants
inferredcites →https://doi.org/10.3390/plants10091849openalex-extracted
Genome-Wide Identification of the HMA Gene Family and Expression Analysis under Cd Stress in Barley
inferredcites →https://doi.org/10.3390/plants9101281openalex-extracted
Genome-Wide Identification of Barley ABC Genes and Their Expression in Response to Abiotic Stress Treatment
inferredcites →https://doi.org/10.3390/plants9111575openalex-extracted
Effect of Cadmium Toxicity on Growth, Oxidative Damage, Antioxidant Defense System and Cadmium Accumulation in Two Sorghum Cultivars
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Epigenetics: A Historical Overview
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YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs
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The Arabidopsis active demethylase ROS1 cis-regulates defence genes by erasing DNA methylation at promoter-regulatory regions
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