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Switching a conflicted bacterial DTD-tRNA code is essential for the emergence of mitochondria

https://doi.org/10.1126/sciadv.abj7307
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Mosaic origin of the mitochondrial proteome
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Recognition of tRNAGly by three widely diverged glycyl-tRNA synthetases
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T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
inferredcites →https://doi.org/10.1016/0022-5193(67)90079-3openalex-snapshot
On the origin of mitosing cells
inferredcites →https://doi.org/10.1016/j.bbrc.2019.01.142openalex-snapshot
Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation
inferredcites →https://doi.org/10.1016/j.cell.2016.12.026openalex-snapshot
Nuclear Localization of Mitochondrial TCA Cycle Enzymes as a Critical Step in Mammalian Zygotic Genome Activation
inferredcites →https://doi.org/10.1016/j.celrep.2017.06.014openalex-snapshot
Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale
inferredcites →https://doi.org/10.1016/j.cub.2017.09.015openalex-snapshot
The Origin and Diversification of Mitochondria
inferredcites →https://doi.org/10.1016/j.ymeth.2007.08.001openalex-snapshot
[3′-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation
inferredcites →https://doi.org/10.1016/j.ymeth.2016.09.003openalex-snapshot
Isoacceptor specific characterization of tRNA aminoacylation and misacylation in vivo
inferredcites →https://doi.org/10.1016/s0074-7696(08)62068-9openalex-snapshot
The Endosymbiont Hypothesis Revisited
inferredcites →https://doi.org/10.1016/s1385-299x(01)00108-8openalex-snapshot
Isolation and characterization of intact mitochondria from neonatal rat brain
inferredcites →https://doi.org/10.1038/387493a0openalex-snapshot
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
inferredcites →https://doi.org/10.1038/nprot.2007.13openalex-snapshot
High-efficiency yeast transformation using the LiAc/SS carrier DNA/PEG method
inferredcites →https://doi.org/10.1038/s41467-017-02204-wopenalex-snapshot
A chiral selectivity relaxed paralog of DTD for proofreading tRNA mischarging in Animalia
inferredcites →https://doi.org/10.1038/s41580-021-00332-2openalex-snapshot
Mechanisms and regulation of protein synthesis in mitochondria
inferredcites →https://doi.org/10.1038/s41586-018-0059-5openalex-snapshot
Deep mitochondrial origin outside the sampled alphaproteobacteria
inferredcites →https://doi.org/10.1038/s41586-019-1916-6openalex-snapshot
Isolation of an archaeon at the prokaryote–eukaryote interface
inferredcites →https://doi.org/10.1073/pnas.1421379112openalex-snapshot
Mosaic nature of the mitochondrial proteome: Implications for the origin and evolution of mitochondria
inferredcites →https://doi.org/10.1074/jbc.275.14.9986openalex-snapshot
A Stretch of Positively Charged Amino Acids at the N Terminus ofHansenula polymorpha Pex3p Is Involved in Incorporation of the Protein into the Peroxisomal Membrane
inferredcites →https://doi.org/10.1074/jbc.m605860200openalex-snapshot
Identification in Archaea of a Novel D-Tyr-tRNATyr Deacylase
inferredcites →https://doi.org/10.1074/jbc.rev119.008166openalex-snapshot
Chiral checkpoints during protein biosynthesis
inferredcites →https://doi.org/10.1091/mbc.e16-07-0509openalex-snapshot
Lynn Margulis and the endosymbiont hypothesis: 50 years later
inferredcites →https://doi.org/10.1093/gbe/evt008openalex-snapshot
Strikingly Bacteria-Like and Gene-Rich Mitochondrial Genomes throughout Jakobid Protists
inferredcites →https://doi.org/10.1093/nar/26.3.860openalex-snapshot
PCR- and ligation-mediated synthesis of marker cassettes with long flanking homology regions for gene disruption in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1093/nar/gkv1309openalex-snapshot
GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes
inferredcites →https://doi.org/10.1093/nar/gkv279openalex-snapshot
The EMBL-EBI bioinformatics web and programmatic tools framework
inferredcites →https://doi.org/10.1093/nar/gkw256openalex-snapshot
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
inferredcites →https://doi.org/10.1101/cshperspect.a016097openalex-snapshot
The Pre-Endosymbiont Hypothesis: A New Perspective on the Origin and Evolution of Mitochondria
inferredcites →https://doi.org/10.1111/j.1365-2818.2006.01706.xopenalex-snapshot
A guided tour into subcellular colocalization analysis in light microscopy
inferredcites →https://doi.org/10.1126/sciadv.abe8890openalex-snapshot
Recruitment of archaeal DTD is a key event toward the emergence of land plants
inferredcites →https://doi.org/10.1126/science.283.5407.1476openalex-snapshot
Mitochondrial Evolution
inferredcites →https://doi.org/10.1128/mmbr.64.4.786-820.2000openalex-snapshot
Origin and Evolution of the Mitochondrial Proteome
inferredcites →https://doi.org/10.1186/s12859-017-1934-zopenalex-snapshot
ImageJ2: ImageJ for the next generation of scientific image data
inferredcites →https://doi.org/10.1186/s12915-020-0741-6openalex-snapshot
The draft nuclear genome sequence and predicted mitochondrial proteome of Andalucia godoyi, a protist with the most gene-rich and bacteria-like mitochondrial genome
inferredcites →https://doi.org/10.1242/jcs.029207openalex-snapshot
The mitochondrial targeting sequence tilts the balance between mitochondrial and cytosolic dual localization
inferredcites →https://doi.org/10.1371/journal.pbio.1002465openalex-snapshot
Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase
inferredcites →https://doi.org/10.1534/g3.115.017830openalex-snapshot
CYCLoPs: A Comprehensive Database Constructed from Automated Analysis of Protein Abundance and Subcellular Localization Patterns inSaccharomyces cerevisiae
inferredcites →https://doi.org/10.3791/1865openalex-snapshot
Identification of Growth Inhibition Phenotypes Induced by Expression of Bacterial Type III Effectors in Yeast
inferredcites →https://doi.org/10.3791/1865-vopenalex-snapshot
Identification of Growth Inhibition Phenotypes Induced by Expression of Bacterial Type III Effectors in Yeast
inferredcites →https://doi.org/10.4103/1947-2714.128481openalex-snapshot
Western blot: Protein transfer overview
inferredcites →https://doi.org/10.7554/elife.01519openalex-snapshot
Mechanism of chiral proofreading during translation of the genetic code
inferredcites →https://doi.org/10.7554/elife.24001openalex-snapshot
Role of D-aminoacyl-tRNA deacylase beyond chiral proofreading as a cellular defense against glycine mischarging by AlaRS
inferredcites →https://doi.org/10.7554/elife.38232openalex-snapshot
A discriminator code–based DTD surveillance ensures faithful glycine delivery for protein biosynthesis in bacteria

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/1873-3468.14419openalex-snapshot
Chiral proofreading during protein biosynthesis and its evolutionary implications
inferred← citeshttps://doi.org/10.1007/s12035-024-04545-2openalex-snapshot
Association Between the Gut Microbiota and Alzheimer’s Disease: An Update on Signaling Pathways and Translational Therapeutics
inferred← citeshttps://doi.org/10.1007/s12038-023-00388-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.semcdb.2024.03.001openalex-snapshot
Symbiotic symphony: Understanding host-microbiota dialogues in a spatial context
inferred← citeshttps://doi.org/10.1021/acsomega.4c07147openalex-snapshot
PAPreC: A Pipeline for Antigenicity Prediction Comparison Methods across Bacteria
inferred← citeshttps://doi.org/10.1038/d44151-022-00006-8openalex-snapshot
How mitochondria evolved from bacteria
inferred← citeshttps://doi.org/10.1038/s41392-024-01946-6openalex-snapshot
A systematic framework for understanding the microbiome in human health and disease: from basic principles to clinical translation
inferred← citeshttps://doi.org/10.1038/s41418-022-01082-0openalex-snapshot
When cell death goes wrong: inflammatory outcomes of failed apoptosis and mitotic cell death
inferred← citeshttps://doi.org/10.1073/pnas.2219292120openalex-snapshot
Distinct localization of chiral proofreaders resolves organellar translation conflict in plants
inferred← citeshttps://doi.org/10.1093/nar/gkad007openalex-snapshot
The tRNA identity landscape for aminoacylation and beyond
inferred← citeshttps://doi.org/10.1093/nar/gkae117openalex-snapshot
When Paul Berg meets Donald Crothers: an achiral connection through protein biosynthesis
inferred← citeshttps://doi.org/10.1101/2024.10.08.615749openalex-snapshot
Bacterial sensing via Neuronal Receptor Initiates Gut Mitochondrial Surveillance for Host Adaptation
inferred← citeshttps://doi.org/10.1101/2025.06.27.662070openalex-snapshot
Microbial Peptidoglycan Engages Autophagy Receptor P62 to Induce Protective Mitophagy in the Liver
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1437528openalex-snapshot
The role of tRNA identity elements in aminoacyl-tRNA editing
inferred← citeshttps://doi.org/10.3389/fnut.2022.936929openalex-snapshot
Relevance of sex-differenced analyses in bioenergetics and nutritional studies
inferred← citeshttps://doi.org/10.3389/fonc.2023.1185163openalex-snapshot
Could the tumor-associated microbiota be the new multi-faceted player in the tumor microenvironment?
inferred← citeshttps://doi.org/10.3390/diagnostics13040813openalex-snapshot
From Pathogens to Cancer: Are Cancer Cells Evolved Mitochondrial Super Cells?
inferred← citeshttps://doi.org/10.3390/life12020252openalex-snapshot
“Superwobbling” and tRNA-34 Wobble and tRNA-37 Anticodon Loop Modifications in Evolution and Devolution of the Genetic Code
inferred← citeshttps://doi.org/10.7554/elife.111475openalex-snapshot
Bacterial ancestry of the mitochondrial ATP exporter
inferred← citeshttps://doi.org/10.7554/elife.111475.1openalex-snapshot
Bacterial ancestry of the mitochondrial ATP exporter
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