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https://doi.org/10.2139/ssrn.4650517

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Machine learning approaches for prediction of linear B‐cell epitopes on proteins
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MHC Molecules, T cell Receptors, Natural Killer Cell Receptors, and Viral Immunoevasins—Key Elements of Adaptive and Innate Immunity
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Feature selection for support vector machines with RBF kernel
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Accelerated gradient boosting
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DNA and peptide sequences and chemical processes multivariately modelled by principal component analysis and partial least-squares projections to latent structures
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Backpropagation and stochastic gradient descent method
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Immunology of bacterial polysaccharide antigens
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Designing multi-epitope vaccine against Staphylococcus aureus by employing subtractive proteomics, reverse vaccinology and immuno-informatics approaches
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Protein secretion systems in Pseudomonas aeruginosa: A wealth of pathogenic weapons
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Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes
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Improved Prediction of Signal Peptides: SignalP 3.0
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Molecular cloning and immunogenicity evaluation of IsdE protein of methicillin resistant Staphylococcus aureus as vaccine candidates
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B and T cell epitope-based peptides predicted from clumping factor protein of Staphylococcus aureus as vaccine targets
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Structural analysis of B-cell epitopes in antibody:protein complexes
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SERPINB7 Expression Predicts Poor Pancreatic Cancer Survival Upon Gemcitabine Treatment
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The OmpA family of proteins: Roles in bacterial pathogenesis and immunity
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Basic Local Alignment Search Tool
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Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus
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ESKAPE pathogens: antimicrobial resistance, epidemiology, clinical impact and therapeutics
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Human antibody responses against non-covalently cell wall-bound Staphylococcus aureus proteins
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Prioritization of potential vaccine targets using comparative proteomics and designing of the chimeric multi-epitope vaccine against Pseudomonas aeruginosa
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Defining the core essential genome of Pseudomonas aeruginosa
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In Vivo and in Vitro Synthesis of Phosphatidylglycerol by an Escherichia coli Cardiolipin Synthase
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Lipopolysaccharide O-antigens—bacterial glycans made to measure
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Vaxign-ML: supervised machine learning reverse vaccinology model for improved prediction of bacterial protective antigens
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A Local Mean-Based k-Nearest Centroid Neighbor Classifier
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Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning
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The PROSITE database
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NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
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Protegen: a web-based protective antigen database and analysis system
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UniProt: a worldwide hub of protein knowledge
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Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools
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Persistence of Immune Responses Through 36 Months in Healthy Adults After Vaccination With a Novel Staphylococcus aureus 4-Antigen Vaccine (SA4Ag)
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A New Diverse AdaBoost Classifier
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The decision tree classifier: Design and potential
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Active Learning With Gaussian Process Classifier for Hyperspectral Image Classification
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Analysis and prediction of affinity of TAP binding peptides using cascade SVM
inferredcites →https://doi.org/10.1111/j.1574-6968.2006.00229.xopenalex-extracted
Clumping factor A ofStaphylococcus aureusinhibits phagocytosis by human polymorphonuclear leucocytes
inferredcites →https://doi.org/10.1126/sciadv.abj7307openalex-extracted
Switching a conflicted bacterial DTD-tRNA code is essential for the emergence of mitochondria
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Iron-Source Preference of Staphylococcus aureus Infections
inferredcites →https://doi.org/10.1128/9781555819286.ch16openalex-extracted
Antigenic Variation in Bacterial Pathogens
inferredcites →https://doi.org/10.1128/iai.00435-22openalex-extracted
Modulation of Host-Microbe Metabolism by Cholera Toxin
inferredcites →https://doi.org/10.1128/iai.73.1.444-452.2005openalex-extracted
Use of Phage Display To Identify Potential Pseudomonas aeruginosa Gene Products Relevant to Early Cystic Fibrosis Airway Infections
inferredcites →https://doi.org/10.1128/jb.00968-08openalex-extracted
Influence of thePseudomonasQuinolone Signal on Denitrification inPseudomonas aeruginosa
inferredcites →https://doi.org/10.1146/annurev-pathol-012615-044351openalex-extracted
Pathogenesis of Staphylococcus aureus Bloodstream Infections
inferredcites →https://doi.org/10.1155/2017/2680160openalex-extracted
Fundamentals and Methods for T- and B-Cell Epitope Prediction
inferredcites →https://doi.org/10.1186/1471-2105-8-4openalex-extracted
VaxiJen: a server for prediction of protective antigens, tumour antigens and subunit vaccines
inferredcites →https://doi.org/10.1186/1471-2105-9-514openalex-extracted
ElliPro: a new structure-based tool for the prediction of antibody epitopes
inferredcites →https://doi.org/10.1186/1471-2164-6-79openalex-extracted
Bcipep: A database of B-cell epitopes
inferredcites →https://doi.org/10.1186/s12864-018-5282-9openalex-extracted
A context-free encoding scheme of protein sequences for predicting antigenicity of diverse influenza A viruses
inferredcites →https://doi.org/10.1186/s13099-022-00495-zopenalex-extracted
Designing a novel multi-epitope vaccine to evoke a robust immune response against pathogenic multidrug-resistant Enterococcus faecium bacterium
inferredcites →https://doi.org/10.1186/s43141-023-00583-wopenalex-extracted
Bioinformatics analysis of multi-epitope peptide vaccines against Hepatitis C virus: a molecular docking study
inferredcites →https://doi.org/10.1186/s43141-023-00614-6openalex-extracted
Immunoinformatics analysis of Brucella melitensis to approach a suitable vaccine against brucellosis
inferredcites →https://doi.org/10.1371/journal.pcbi.1003266openalex-extracted
Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
inferredcites →https://doi.org/10.1371/journal.pone.0181426openalex-extracted
Multi-scale encoding of amino acid sequences for predicting protein interactions using gradient boosting decision tree
inferredcites →https://doi.org/10.1371/journal.ppat.1007713openalex-extracted
Clumping factor B is an important virulence factor during Staphylococcus aureus skin infection and a promising vaccine target
inferredcites →https://doi.org/10.1371/journal.ppat.1012072openalex-extracted
Streptolysin S is required for Streptococcus pyogenes nasopharyngeal and skin infection in HLA-transgenic mice
inferredcites →https://doi.org/10.1586/14760584.2014.890053openalex-extracted
Vaccines for Pseudomonas aeruginosa : a long and winding road
inferredcites →https://doi.org/10.18653/v1/2020.eval4nlp-1.9openalex-extracted
Probabilistic Extension of Precision, Recall, and F1 Score for More Thorough Evaluation of Classification Models
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Boruta – A System for Feature Selection
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Synthesis and decoding of selenocysteine and human health
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The immune evasion roles of Staphylococcus aureus protein A and impact on vaccine development
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Predicting HLA CD4 Immunogenicity in Human Populations
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Comprehending B-Cell Epitope Prediction to Develop Vaccines and Immunodiagnostics
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A sequence-based machine learning model for predicting antigenic distance for H3N2 influenza virus
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Immunoinformatic prediction of the pathogenicity of bovine viral diarrhea virus genotypes: implications for viral virulence determinants, designing novel diagnostic assays and vaccines development
inferredcites →https://doi.org/10.3390/biomedicines11082180openalex-extracted
Immunoinformatics for Novel Multi-Epitope Vaccine Development in Canine Parvovirus Infections
inferredcites →https://doi.org/10.3390/ma15010337openalex-extracted
Transition Metal Dichalcogenides (TMDC)-Based Nanozymes for Biosensing and Therapeutic Applications
inferredcites →https://doi.org/10.4049/jimmunol.1700893openalex-extracted
NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data
inferredcites →https://doi.org/10.4161/hv.21872openalex-extracted
Development of a multicomponentStaphylococcus aureusvaccine designed to counter multiple bacterial virulence factors
inferredcites →https://doi.org/10.7717/peerj.12548openalex-extracted
EpiCurator: an immunoinformatic workflow to predict and prioritize SARS-CoV-2 epitopes
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Multilayer Perceptron: Architecture Optimization and Training
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