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Resolution of the Early Placental Mammal Radiation Using Bayesian Phylogenetics

https://doi.org/10.1126/science.1067179
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Molecular phylogenetics: state-of-the-art methods for looking into the past
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A molecular timescale for vertebrate evolution
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Parallel adaptive radiations in two major clades of placental mammals
inferredcites →https://doi.org/10.1038/35054550openalex-snapshot
Molecular phylogenetics and the origins of placental mammals
inferredcites →https://doi.org/10.1038/35102048openalex-snapshot
Late Cretaceous relatives of rabbits, rodents, and other extant eutherian mammals
inferredcites →https://doi.org/10.1038/356121a0openalex-snapshot
Mammalian phytogeny: shaking the tree
inferredcites →https://doi.org/10.1038/383130a0openalex-snapshot
Inferring complex phytogenies
inferredcites →https://doi.org/10.1038/46536openalex-snapshot
The earliest angiosperms: evidence from mitochondrial, plastid and nuclear genomes
inferredcites →https://doi.org/10.1073/pnas.070154797openalex-snapshot
Separation of phylogenetic and functional associations in biological sequences by using the parametric bootstrap
inferredcites →https://doi.org/10.1073/pnas.111551998openalex-snapshot
Integrated fossil and molecular data reconstruct bat echolocation
inferredcites →https://doi.org/10.1080/106351500750049752openalex-snapshot
Likelihood-Based Tests of Topologies in Phylogenetics
inferredcites →https://doi.org/10.1080/106351599260454openalex-snapshot
Mammalian Evolution: Timing and Implications from Using the LogDeterminant Transform for Proteins of Differing Amino Acid Composition
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
inferredcites →https://doi.org/10.1093/jhered/92.2.212openalex-snapshot
Molecular Dating and Biogeography of the Early Placental Mammal Radiation
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003787openalex-snapshot
Mitochondrial Versus Nuclear Gene Sequences in Deep-Level Mammalian Phylogeny Reconstruction
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025940openalex-snapshot
Estimating divergence dates from molecular sequences
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026160openalex-snapshot
Markov Chasin Monte Carlo Algorithms for the Bayesian Analysis of Phylogenetic Trees
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040259openalex-snapshot
Phylogenetic test of the molecular clock and linearized trees.
inferredcites →https://doi.org/10.1093/sysbio/42.2.182openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/sysbio/48.1.1openalex-snapshot
Towards Resolving the Interordinal Relationships of Placental Mammals
inferredcites →https://doi.org/10.1111/j.1749-6632.1914.tb55346.xopenalex-snapshot
CLIMATE AND EVOLUTION
inferredcites →https://doi.org/10.1126/science.1056346openalex-snapshot
Molecular and Morphological Supertrees for Eutherian (Placental) Mammals
inferredcites →https://doi.org/10.1126/science.1059393openalex-snapshot
On Choosing Mammalian Genomes for Sequencing
inferredcites →https://doi.org/10.1126/science.283.5406.1310openalex-snapshot
Evolutionary and Preservational Constraints on Origins of Biologic Groups: Divergence Times of Eutherian Mammals
inferredcites →https://doi.org/10.2307/1447682openalex-snapshot
Molecular Systematics
inferredcites →https://doi.org/10.2307/2992540openalex-snapshot
An Empirical Test of Bootstrapping as a Method for Assessing Confidence in Phylogenetic Analysis

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Mammals of Korea: a review of their taxonomy, distribution and conservation status
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Bayesian Phylogenetic Analysis
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Eutheria (Placental Mammals)
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Mammalian Phylogeny
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Reconstruction of the Ancestral Xenarthran Karyotype
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Eutheria (Placental Mammals)
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Comparative Placentation
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Bayesian Phylogenetic Analysis
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Episodic Molecular Evolution of Pituitary Growth Hormone in Cetartiodactyla
inferred← citeshttps://doi.org/10.1007/s00239-004-2657-0openalex-snapshot
Isolation, Characterization, and Evolutionary Divergence of Mouse RNase 6: Evidence for Unusual Evolution in Rodents
inferred← citeshttps://doi.org/10.1007/s00239-005-0093-4openalex-snapshot
Evolution of the “OR37” Subfamily of Olfactory Receptors: A Cross-Species Comparison
inferred← citeshttps://doi.org/10.1007/s00239-005-0146-8openalex-snapshot
Tandem Repetitive D Domains of the Sperm Ligand Zonadhesin Evolve Faster in the Paralogue Than in the Orthologue Comparison
inferred← citeshttps://doi.org/10.1007/s00239-006-0083-1openalex-snapshot
Positive Selection in the N-Terminal Extramembrane Domain of Lung Surfactant Protein C (SP-C) in Marine Mammals
inferred← citeshttps://doi.org/10.1007/s00239-008-9142-0openalex-snapshot
The Phylogenetic Informativeness of Nucleotide and Amino Acid Sequences for Reconstructing the Vertebrate Tree
inferred← citeshttps://doi.org/10.1007/s00239-008-9165-6openalex-snapshot
Adaptive Evolution of Gamete-Recognition Proteins in Birds
inferred← citeshttps://doi.org/10.1007/s00239-009-9268-8openalex-snapshot
Measuring Fit of Sequence Data to Phylogenetic Model: Gain of Power Using Marginal Tests
inferred← citeshttps://doi.org/10.1007/s00239-010-9336-0openalex-snapshot
Does Drive Toward Canonic Exonic Splicing Sites Exist in Mammals?
inferred← citeshttps://doi.org/10.1007/s00239-010-9398-zopenalex-snapshot
Automated Removal of Noisy Data in Phylogenomic Analyses
inferred← citeshttps://doi.org/10.1007/s00239-010-9399-yopenalex-snapshot
Selection and the Cell Cycle: Positive Darwinian Selection in a Well-Known DNA Damage Response Pathway
inferred← citeshttps://doi.org/10.1007/s00239-011-9460-5openalex-snapshot
Prestin Shows Divergent Evolution Between Constant Frequency Echolocating Bats
inferred← citeshttps://doi.org/10.1007/s00239-021-10006-4openalex-snapshot
Deformity Index: A Semi-Reference Clade-Based Quality Metric of Phylogenetic Trees
inferred← citeshttps://doi.org/10.1007/s00251-004-0742-6openalex-snapshot
The feline major histocompatibility complex is rearranged by an inversion with a breakpoint in the distal class I region
inferred← citeshttps://doi.org/10.1007/s00251-007-0269-8openalex-snapshot
Evolution, expression and effectiveness in a cluster of novel bovine β-defensins
inferred← citeshttps://doi.org/10.1007/s00251-009-0413-8openalex-snapshot
Major histocompatibility complex variation and evolution at a single, expressed DQA locus in two genera of elephants
inferred← citeshttps://doi.org/10.1007/s00251-010-0466-8openalex-snapshot
Characterisation of MHC class II DRB genes in the northern tree shrew (Tupaia belangeri)
inferred← citeshttps://doi.org/10.1007/s00251-010-0468-6openalex-snapshot
Genomic architecture of MHC-linked odorant receptor gene repertoires among 16 vertebrate species
inferred← citeshttps://doi.org/10.1007/s00251-015-0868-8openalex-snapshot
An overview of the lagomorph immune system and its genetic diversity
inferred← citeshttps://doi.org/10.1007/s00335-005-0067-2openalex-snapshot
Natural selection and mammalian BRCA1 sequences: elucidating functionally important sites relevant to breast cancer susceptibility in humans
inferred← citeshttps://doi.org/10.1007/s00335-009-9242-1openalex-snapshot
Divergent patterns of breakpoint reuse in Muroid rodents
inferred← citeshttps://doi.org/10.1007/s00335-014-9544-9openalex-snapshot
Mitochondrial data are not suitable for resolving placental mammal phylogeny
inferred← citeshttps://doi.org/10.1007/s00359-010-0573-xopenalex-snapshot
Sex matters in echoacoustic orientation: gender differences in the use of acoustic landmarks in Phyllostomus discolor (lesser spear-nosed bat)
inferred← citeshttps://doi.org/10.1007/s00360-015-0907-7openalex-snapshot
Brown adipose tissue: physiological function and evolutionary significance
inferred← citeshttps://doi.org/10.1007/s00404-022-06597-yopenalex-snapshot
Archimetrosis: the evolution of a disease and its extant presentation
inferred← citeshttps://doi.org/10.1007/s00412-004-0301-9openalex-snapshot
LINE-1 distribution in Afrotheria and Xenarthra: implications for understanding the evolution of LINE-1 in eutherian genomes
inferred← citeshttps://doi.org/10.1007/s00412-023-00802-wopenalex-snapshot
Increased genome size is caused by heterochromatin addition in two non-related bat species, Hesperoptenus doriae and Philetor brachypterus (Vespertilionidae, Chiroptera, Mammalia)
inferred← citeshttps://doi.org/10.1007/s00429-010-0264-yopenalex-snapshot
The insular cortex: a comparative perspective
inferred← citeshttps://doi.org/10.1007/s00429-016-1304-zopenalex-snapshot
A diffusion tensor imaging atlas of white matter in tree shrew
inferred← citeshttps://doi.org/10.1007/s00429-019-01997-4openalex-snapshot
Structural, morphometric and immunohistochemical study of the rabbit accessory olfactory bulb
inferred← citeshttps://doi.org/10.1007/s00435-007-0053-1openalex-snapshot
Shape and size variations in the cranium of elephant-shrews: a morphometric contribution to a phylogenetic debate
inferred← citeshttps://doi.org/10.1007/s00436-010-2110-9openalex-snapshot
Contribution to the knowledge of Culicoides (Diptera: Ceratopogonidae) host preferences in France
inferred← citeshttps://doi.org/10.1007/s00436-018-5901-zopenalex-snapshot
Skin mites in mice (Mus musculus): high prevalence of Myobia sp. (Acari, Arachnida) in Robertsonian mice
inferred← citeshttps://doi.org/10.1007/s00436-019-06474-9openalex-snapshot
Isolation and molecular characterization of four novel Neospora caninum strains
inferred← citeshttps://doi.org/10.1007/s00606-007-0598-yopenalex-snapshot
Monophyly and phylogenetic relationships of Minthostachys (Labiatae, Nepetoideae) examined using morphological and nrITS data
inferred← citeshttps://doi.org/10.1007/s00606-009-0156-xopenalex-snapshot
Systematics and evolution of Carex sects. Spirostachyae and Elatae (Cyperaceae)
inferred← citeshttps://doi.org/10.1007/s10071-026-02108-7openalex-snapshot
Elephant gestural communication during agonistic interactions: repertoire, intentionality, and goals
inferred← citeshttps://doi.org/10.1007/s10267-003-0105-4openalex-snapshot
Umbelopsis gibberispora sp. nov. from Japanese leaf litter and a clarification of Micromucor ramannianus var. angulisporus
inferred← citeshttps://doi.org/10.1007/s10482-008-9232-4openalex-snapshot
Human gut microbiota and bifidobacteria: from composition to functionality
inferred← citeshttps://doi.org/10.1007/s10528-005-6777-zopenalex-snapshot
Phylogenetic Relationships of the Macaques (Cercopithecidae: Macaca), Inferred from Mitochondrial DNA Sequences
inferred← citeshttps://doi.org/10.1007/s10528-009-9224-8openalex-snapshot
Molecular Cloning and Evolutionary Analysis of Hemoglobin α-Chain Genes in Bats
inferred← citeshttps://doi.org/10.1007/s10528-011-9463-3openalex-snapshot
Molecular Cloning and Evolutionary Analysis of GJB6 in Mammals
inferred← citeshttps://doi.org/10.1007/s10528-014-9659-4openalex-snapshot
Parallel Evolution of the Glycogen Synthase 1 (Muscle) Gene Gys1 Between Old World and New World Fruit Bats (Order: Chiroptera)
inferred← citeshttps://doi.org/10.1007/s10528-018-9897-yopenalex-snapshot
Evolution and Expression of S100A7 Gene in Vertebrates
inferred← citeshttps://doi.org/10.1007/s10577-005-0989-2openalex-snapshot
Characterizing the chromosomes of the Australian model marsupial Macropus eugenii (tammar wallaby)
inferred← citeshttps://doi.org/10.1007/s10577-005-1002-9openalex-snapshot
Low rate of genomic repatterning in Xenarthra inferred from chromosome painting data
inferred← citeshttps://doi.org/10.1007/s10577-006-1032-yopenalex-snapshot
Cross-species chromosome painting unveils cytogenetic signatures for the Eulipotyphla and evidence for the polyphyly of Insectivora
inferred← citeshttps://doi.org/10.1007/s10577-006-1091-0openalex-snapshot
Chromosome painting and molecular dating indicate a low rate of chromosomal evolution in golden moles (Mammalia, Chrysochloridae)
inferred← citeshttps://doi.org/10.1007/s10577-007-1119-0openalex-snapshot
The region homologous to the X-chromosome inactivation centre has been disrupted in marsupial and monotreme mammals
inferred← citeshttps://doi.org/10.1007/s10577-007-1206-2openalex-snapshot
Comparative cytogenetics of bats (Chiroptera): The prevalence of Robertsonian translocations limits the power of chromosomal characters in resolving interfamily phylogenetic relationships
inferred← citeshttps://doi.org/10.1007/s10577-008-1264-0openalex-snapshot
Defining the ancestral eutherian karyotype: A cladistic interpretation of chromosome painting and genome sequence assembly data
inferred← citeshttps://doi.org/10.1007/s10577-011-9210-yopenalex-snapshot
Reconstruction of karyotype evolution in core Glires. I. The genome homology revealed by comparative chromosome painting
inferred← citeshttps://doi.org/10.1007/s10584-005-1584-4openalex-snapshot
Biological Impacts of Climatic Change on a Beringian Endemic: Cryptic Refugia in the Establishment and Differentiation of the Rock Sandpiper (Calidris Ptilocnemis)
inferred← citeshttps://doi.org/10.1007/s10709-015-9879-5openalex-snapshot
Gene structure and evolution of transthyretin in the order Chiroptera
inferred← citeshttps://doi.org/10.1007/s10863-005-4121-2openalex-snapshot
Rapid Nonsynonymous Evolution of the Iron-Sulfur Protein in Anthropoid Primates
inferred← citeshttps://doi.org/10.1007/s10910-013-0212-1openalex-snapshot
Novel algorithm for phylogenetic analysis of proteins: application to analysis of the evolution of H5N1 influenza viruses
inferred← citeshttps://doi.org/10.1007/s10914-005-5725-3openalex-snapshot
Locking Yourself Out: Diversity Among Dentally Zalambdodont Therian Mammals
inferred← citeshttps://doi.org/10.1007/s10914-006-9006-6openalex-snapshot
Spiny Norman in the Garden of Eden? Dispersal and early biogeography of Placentalia
inferred← citeshttps://doi.org/10.1007/s10914-007-9062-6openalex-snapshot
A Phylogeny and Timescale for Marsupial Evolution Based on Sequences for Five Nuclear Genes
inferred← citeshttps://doi.org/10.1007/s10914-009-9116-zopenalex-snapshot
The Ear Region of the Pen-tailed Treeshrew, Ptilocercus lowii Gray, 1848 (Placentalia, Scandentia, Ptilocercidae)
inferred← citeshttps://doi.org/10.1007/s10914-010-9150-xopenalex-snapshot
A Phylogenetic Analysis of Human Syntenies Revealed by Chromosome Painting in Euarchontoglires Orders
inferred← citeshttps://doi.org/10.1007/s10914-012-9210-5openalex-snapshot
The Levator Veli Palatini Muscle in Artiodactyls—A Comparative Ontogenetic Study
inferred← citeshttps://doi.org/10.1007/s10914-019-09465-wopenalex-snapshot
Molecular Phylogenetics of Bradypus (Three-Toed Sloth, Pilosa: Bradypodidae, Mammalia) and Phylogeography of Bradypus variegatus (Brown-Throated Three-Toed Sloth) with Mitochondrial Gene Sequences
inferred← citeshttps://doi.org/10.1007/s10914-021-09537-wopenalex-snapshot
Hind Limb Bone Proportions Reveal Unexpected Morphofunctional Diversification in Xenarthrans
inferred← citeshttps://doi.org/10.1007/s10914-022-09613-9openalex-snapshot
An African Radiation of ‘Dryolestoidea’ (Donodontidae, Cladotheria) and its Significance for Mammalian Evolution
inferred← citeshttps://doi.org/10.1007/s10914-022-09624-6openalex-snapshot
Down a Rabbit Hole: Burrowing Behaviour and Larger Home Ranges are Related to Larger Brains in Leporids
inferred← citeshttps://doi.org/10.1007/s10914-022-09633-5openalex-snapshot
Did some extinct South American native ungulates arise from an afrothere ancestor? A critical appraisal of Avilla and Mothé’s (2021) Sudamericungulata – Panameridiungulata hypothesis
inferred← citeshttps://doi.org/10.1007/s10914-023-09678-0openalex-snapshot
Three areas of cranial evolution in the white-bellied pangolin (Phataginus tricuspis): An initial report on asymmetry, ontogeny and modularity
inferred← citeshttps://doi.org/10.1007/s10914-024-09727-2openalex-snapshot
The effects of ordered multistate morphological characters on phylogenetic analyses of eutherian mammals
inferred← citeshttps://doi.org/10.1007/s11011-018-0303-6openalex-snapshot
Donepezil improves the cognitive impairment in a tree shrew model of Alzheimer’s disease induced by amyloid-β1–40 via activating the BDNF/TrkB signal pathway
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