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Application and Accuracy of Molecular Phylogenies

https://doi.org/10.1126/science.8171318
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00166252openalex-snapshot
Statistical tests of models of DNA substitution
inferredcites →https://doi.org/10.1007/bf00942144openalex-snapshot
Restriction data from chloroplast DNA for phylogenetic reconstruction: Is there only one accurate way of scoring?
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1007/bf01733904openalex-snapshot
Patterns of nucleotide substitution in pseudogenes and functional genes
inferredcites →https://doi.org/10.1007/bf01734359openalex-snapshot
Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1007/bf02100628openalex-snapshot
Nonrandomness of point mutation as reflected in nucleotide substitutions in pseudogenes and its evolutionary implications
inferredcites →https://doi.org/10.1007/bf02101275openalex-snapshot
Mutation pattern of human immunodeficiency virus genes
inferredcites →https://doi.org/10.1007/bf02102078openalex-snapshot
A maximum likelihood approach to the detection of selection from a phylogeny
inferredcites →https://doi.org/10.1016/0140-6736(90)93391-2openalex-snapshot
Zidovudine sensitivity of human immunodeficiency viruses from high-risk, symptom-free individuals during therapy
inferredcites →https://doi.org/10.1016/0169-5347(92)90244-6openalex-snapshot
Progress with methods for constructing evolutionary trees
inferredcites →https://doi.org/10.1016/b978-1-4832-3210-2.50006-6openalex-snapshot
Mammalian Protein Metabolism
inferredcites →https://doi.org/10.1038/331184a0openalex-snapshot
Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences
inferredcites →https://doi.org/10.1038/334440a0openalex-snapshot
Extensive variation of human immunodeficiency virus type-1 in vivo
inferredcites →https://doi.org/10.1038/339145a0openalex-snapshot
Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree
inferredcites →https://doi.org/10.1038/349167a0openalex-snapshot
Macrophage and T cell-line tropisms of HIV-1 are determined by specific regions of the envelope gp!20 gene
inferredcites →https://doi.org/10.1038/361691a0openalex-snapshot
Dental HIV transmission?
inferredcites →https://doi.org/10.1038/367026a0openalex-snapshot
Parsimony or statistics?
inferredcites →https://doi.org/10.1038/367026b0openalex-snapshot
Parsimony or statistics?
inferredcites →https://doi.org/10.1093/oso/9780195066982.001.0001openalex-snapshot
Phylogenetic analysis Of Dna sequences
inferredcites →https://doi.org/10.1093/oso/9780198546412.001.0001openalex-snapshot
The Comparative Method in Evolutionary Biology
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a111190openalex-snapshot
Signal, Noise, and Reliability in Molecular Phylogenetic Analyses
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a039998openalex-snapshot
Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040433openalex-snapshot
A rate-independent technique for analysis of nucleic acid sequences: evolutionary parsimony.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040480openalex-snapshot
Paired sequence difference in ribosomal RNAs: evolutionary and phylogenetic implications.
inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot
Cases in which Parsimony or Compatibility Methods will be Positively Misleading
inferredcites →https://doi.org/10.1093/sysbio/42.1.85openalex-snapshot
Experimental Tests of Phylogenetic Inference Methods
inferredcites →https://doi.org/10.1093/sysbio/42.1.90openalex-snapshot
Experimental Approaches to Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/sysbio/42.3.247openalex-snapshot
Success of Phylogenetic Methods in the Four-Taxon Case
inferredcites →https://doi.org/10.1097/00002030-198912000-00001openalex-snapshot
Characterization of HIV-1 neutralization escape mutants
inferredcites →https://doi.org/10.1098/rstb.1986.0010openalex-snapshot
The estimate of total nucleotide substitutions from pairwise differences is biased
inferredcites →https://doi.org/10.1101/sqb.1987.052.01.090openalex-snapshot
Earliest Phylogenetic Branchings: Comparing rRNA-based Evolutionary Trees Inferred with Various Techniques
inferredcites →https://doi.org/10.1111/j.1095-8312.1981.tb01847.xopenalex-snapshot
A likelihood approach to character weighting and what it tells us about parsimony and compatibility
inferredcites →https://doi.org/10.1111/j.1096-0031.1990.tb00543.xopenalex-snapshot
COMBINATORIAL WEIGHTS IN PHYLOGENETIC ANALYSIS: A STATISTICAL PARSIMONY PROCEDURE
inferredcites →https://doi.org/10.1111/j.1558-5646.1967.tb03411.xopenalex-snapshot
PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURES
inferredcites →https://doi.org/10.1111/j.1558-5646.1992.tb01991.xopenalex-snapshot
PHYLOGENIES FROM RESTRICTION SITES: A MAXIMUM‐LIKELIHOOD APPROACH
inferredcites →https://doi.org/10.1111/j.1558-5646.1993.tb02130.xopenalex-snapshot
EXPERIMENTAL MOLECULAR EVOLUTION OF BACTERIOPHAGE T7
inferredcites →https://doi.org/10.1126/science.155.3760.279openalex-snapshot
Construction of Phylogenetic Trees
inferredcites →https://doi.org/10.1126/science.1736360openalex-snapshot
Experimental Phylogenetics: Generation of a Known Phylogeny
inferredcites →https://doi.org/10.1126/science.1948027openalex-snapshot
Of Genes and Genomes
inferredcites →https://doi.org/10.1126/science.1948030openalex-snapshot
Gene Trees and the Origins of Inbred Strains of Mice
inferredcites →https://doi.org/10.1126/science.256.5060.1165openalex-snapshot
Molecular Epidemiology of HIV Transmission in a Dental Practice
inferredcites →https://doi.org/10.1126/science.261.5123.856openalex-snapshot
Parallel Scientific Computation
inferredcites →https://doi.org/10.1126/science.3012778openalex-snapshot
Genetic Variation in HTLV-III/LAV Over Time in Patients with AIDS or at Risk for AIDS
inferredcites →https://doi.org/10.1137/0128004openalex-snapshot
Minimal Mutation Trees of Sequences
inferredcites →https://doi.org/10.2307/1446122openalex-snapshot
Phylogeny, Ecology, and Behavior. A Research Program in Comparative Biology
inferredcites →https://doi.org/10.2307/2406616openalex-snapshot
Phylogenetic Analysis: Models and Estimation Procedures
inferredcites →https://doi.org/10.2307/2412923openalex-snapshot
Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
inferredcites →https://doi.org/10.2307/2413121openalex-snapshot
Parsimony and Likelihood: An Exchange
inferredcites →https://doi.org/10.2307/2807064openalex-snapshot
Phylogeny, Ecology, and Behavior.
inferredcites →https://doi.org/10.2307/2992355openalex-snapshot
Maximum Likelihood Inference of Phylogenetic Trees, with Special Reference to a Poisson Process Model of DNA Substitution and to Parsimony Analyses
inferredcites →https://doi.org/10.5281/zenodo.16435756openalex-snapshot
A Statistical Method for Evaluating Systematic Relationships
inferredcites →https://doi.org/10.5860/choice.39-2183openalex-snapshot
MacClade 4.0: analysis of phylogeny and character evolution
inferredcites →https://doi.org/10.7326/0003-4819-116-10-798openalex-snapshot
Transmission of Human Immunodeficiency Virus in a Dental Practice

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Phylogenetic analysis of Adephaga (Coleoptera) with extensive taxon sampling reveals unexpected relationships within the hyperdiverse beetle subfamily Harpalinae (Carabidae)
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Hepatitis C virus genotypes implicated in mixed cryoglobulinemia
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Diversity of GB virus C/Hepatitis G virus isolates in Singapore: Predominance of group 2a and the Asian group 3 variant
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Phylogenetic Analysis
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Dealing with Duplicated Genomes of Teleosts
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Genetic Markers and Plant Genetic Resource Management
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Molecular evolution: Codes, clocks, genes and genomes
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Phylogenetically distinct hantavirus implicated in a case of hantavirus pulmonary syndrome in the Northeastern United States
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Isolation of black creek canal virus, a new hantavirus from Sigmodon hispidus in Florida
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Fatal illness associated with a new hantavirus in Louisiana
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Phylogeny and new sectional classification for the Cape Clade of the genus Indigofera (Fabaceae: Indigofereae)
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Molecular taxonomy of the yeasts
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Hop, step and gape: do the social displays of the Pelecaniformes reflect phylogeny?
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Supraspecific taxa as terminals in cladistic analysis: implicit assumptions of monophyly and a comparison of methods
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Reconstructing phylogenies from allozyme data: comparing method performance with congruence
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Simultaneous analysis of 16S, 28S, COI and morphology in the Hymenoptera: Apocrita - evolutionary transitions among parasitic wasps
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Phylogeny of the Lemuridae: Effects of Character and Taxon Sampling on Resolution of Species Relationships within Eulemur
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Classification or Phylogenetic Estimates?
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Mitochondrial Phylogeny of Trematomid Fishes (Nototheniidae, Perciformes) and the Evolution of Antarctic Fish
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Consistency, Characters, and the Likelihood of Correct Phylogenetic Inference
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The Phylogeny of the Caelifera (Insecta, Orthoptera) as Deduced from mtrRNA Gene Sequences
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The Effectiveness of Mitochondrial rRNA Gene Sequences for the Reconstruction of the Phylogeny of an Insect Order (Orthoptera)
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Toward the Phylogeny of the Family Lacertidae: Implications from Mitochondrial DNA 12S and 16S Gene Sequences (Reptilia: Squamata)
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Systematics and Evolution of Lower Central American Cichlids Inferred from Analysis of Cytochrome b Gene Sequences
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Rapid Speciation, Morphological Evolution, and Adaptation to Extreme Environments in South African Sand Lizards (Meroles) as Revealed by Mitochondrial Gene Sequences
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The Position of Arthropods in the Animal Kingdom: A Search for a Reliable Outgroup for Internal Arthropod Phylogeny
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Base Compositional Bias and Phylogenetic Analyses: A Test of the “Flying DNA” Hypothesis
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Phylogenetic Relationships among the Microgastroid Wasps (Hymenoptera: Braconidae): Combined Analysis of 16S and 28S rDNA Genes and Morphological Data
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Phylogenetic Relationships of North American Damselflies of the GenusIschnura(Odonata: Zygoptera: Coenagrionidae) Based on Sequences of Three Mitochondrial Genes
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Phylogeny of the Arachnid Order Opiliones (Arthropoda) Inferred from a Combined Approach of Complete 18S and Partial 28S Ribosomal DNA Sequences and Morphology
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Polyphyly and Convergent Morphological Evolution in Commelinales and Commelinidae: Evidence from rbcL Sequence Data
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Molecular Systematics of the Malagasy Babblers (Passeriformes: Timaliidae) and Warblers (Passeriformes: Sylviidae), Based on Cytochrome b and 16S rRNA Sequences
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The Impact of Parsimony Weighting Schemes on Inferred Relationships among Toucans and Neotropical Barbets (Aves: Piciformes)
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Factors Influencing Phylogenetic Inference: A Case Study Using the Mammalian Carnivores
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Evolutionary Relationships among the True Vipers (Reptilia: Viperidae) Inferred from Mitochondrial DNA Sequences
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Phylogeny of Feather Mite Subfamily Avenzoariinae (Acari: Analgoidea: Avenzoariidae) Inferred from Combined Analyses of Molecular and Morphological Data
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Molecular Systematics of the Western Rattlesnake, Crotalus viridis (Viperidae), with Comments on the Utility of the D-Loop in Phylogenetic Studies of Snakes
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Phylogenetics of the Lizard Genus Tropidurus (Squamata: Tropiduridae: Tropidurinae): Direct Optimization, Descriptive Efficiency, and Sensitivity Analysis of Congruence Between Molecular Data and Morphology
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Phylogenetic Relationships of North American Garter Snakes (Thamnophis) Based on Four Mitochondrial Genes: How Much DNA Sequence Is Enough?
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Geographic Distribution and Genetic Variability of Hepatitis Delta Virus Genotype I
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The Molecular Epidemiology of Human Immunodeficiency Virus Type 1 in Six Cities in Britain and Ireland
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Guanarito Virus (Arenaviridae) Isolates from Endemic and Outlying Localities in Venezuela: Sequence Comparisons among and within Strains Isolated from Venezuelan Hemorrhagic Fever Patients and Rodents
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Genetic Diversity of the Junin Virus in Argentina: Geographic and Temporal Patterns
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Extreme Genetic Diversity among Pirital Virus (Arenaviridae) Isolates from Western Venezuela
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Phylogenetics of HIV
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Estimating Large Distances in Phylogenetic Reconstruction
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The Use of Molecular Epidemiology
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Codon Bias and the Context Dependency of Nucleotide Substitutions in the Evolution of Plastid DNA
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_3openalex-snapshot
Comparative Utility of Chloroplast DNA Restriction Site and DNA Sequence Data for Phylogenetic Studies in Plants
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Patterns of Sequence Evolution and Implications for Parsimony Analysis of Chloroplast DNA
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Divide-and-Conquer Tree Estimation: Opportunities and Challenges
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Resolving the Avian Tree of Life from Top to Bottom: The Promise and Potential Boundaries of the Phylogenomic Era
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The comparison of morphological and molecular data in phylogenetic systematics
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The comparison of morphological and molecular data in phylogenetic systematics
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Molekulare Evolutionsforschung
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Selecting Genomes for Reconstruction of Ancestral Genomes
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Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples
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Molekulare Evolutionsforschung: Methoden, Phylogenie, Merkmalsevolution und Phylogeographie
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A Phylogenetic Perspective on the Evolution of Morphological and Reproductive Characteristics in the Unionoida
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Molecular Systematics: 1994–1995
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Nucleic Acid-Based Discovery Techniques for Potential Xenozoonotic Pathogens
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Systematics and Evolution of the Algae: Endocytobiosis and Evolution of the Major Algal Lineages
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Molekulare Evolutionsforschung
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Early contributions of molecular phylogenetics to understanding the evolution of Rotifera
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Review paper: The evolutionary relationships of rotifers and acanthocephalans
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Phylogenetic Analysis of Marine Phytoplankton
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Phylogenetics
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Testing the phylogeny of swordtail fishes using split decomposition and spectral analysis
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Phylogenetic position of the Chromista plastids based on small subunit rRNA coding regions
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Genetic variation, genetic structure and effective population size in the tropical holoparasitic endophyteBdallophyton bambusarum (Rafflesiaceae)
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Sequence analysis of HIV-1vif gene in Spanish isolates
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The Human Papillomavirus Database
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Common Features of Analogous Replacement Histone H3 Genes in Animals and Plants
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Molecular Evidence for Acanthocephala as a Subtaxon of Rotifera
inferred← citeshttps://doi.org/10.1007/bf02352288openalex-snapshot
Protein sequences indicate that turtles branched off from the amniote tree after mammals
inferred← citeshttps://doi.org/10.1007/bf02871713openalex-snapshot
Feature article
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Reconstruction of phylogenetic relationships
inferred← citeshttps://doi.org/10.1007/pl00000930openalex-snapshot
Phylogeography of crossbills, bullfinches, grosbeaks, and rosefinches
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Evidence for AT-Transversion Bias in Wasp (Hymenoptera: Symphyta) Mitochondrial Genes and Its Implications for the Origin of Parasitism
inferred← citeshttps://doi.org/10.1007/pl00006313openalex-snapshot
Phylogenetic Analysis of Three Lipocalin-Like Proteins Present in the Milk of Trichosurus vulpecula (Phalangeridae, Marsupialia)
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Experimental Evolution Yields Hundreds of Mutations in a Functional Viral Genome
inferred← citeshttps://doi.org/10.1007/s002390010064openalex-snapshot
Phylogeny of Ultra-Rapidly Evolving Dinoflagellate Chloroplast Genes: A Possible Common Origin for Sporozoan and Dinoflagellate Plastids
inferred← citeshttps://doi.org/10.1007/s002390010192openalex-snapshot
Substitution Model of Sequence Evolution for the Human Immunodeficiency Virus Type 1 Subtype B gp120 Gene over the C2-V5 Region
inferred← citeshttps://doi.org/10.1007/s002390010202openalex-snapshot
The Old World Sparrows (Genus Passer) Phylogeography and Their Relative Abundance of Nuclear mtDNA Pseudogenes
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Taxonomy and phylogeny of some Eimeria (Apicomplexa: Eimeriidae) species of rodents as determined by polymerase chain reaction/restriction-fragment-length polymorphism analysis of 18S rDNA
inferred← citeshttps://doi.org/10.1007/s00705-002-0886-3openalex-snapshot
Phylogenetic relationships of dengue-1 viruses from Argentina and Paraguay
inferred← citeshttps://doi.org/10.1007/s007050050479openalex-snapshot
Classification, nomenclature, and database development for hepatitis C virus (HCV) and related viruses: proposals for standardization
inferred← citeshttps://doi.org/10.1007/s10336-005-0036-2openalex-snapshot
Rhodopechys obsoleta (desert finch): a pale ancestor of greenfinches (Carduelis spp.) according to molecular phylogeny
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Erratum to: Rhodopechys obsoleta (desert finch): a pale ancestor of greenfinches (Carduelis spp.) according to molecular phylogeny
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Character Analysis in Cladistics: Abstraction, Reification, and the Search for Objectivity
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Genetic differentiation of an endangered capercaillie (Tetrao urogallus) population at the Southern edge of the species range
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Positively misleading errors
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Diversification of Sisorid catfishes (Teleostei: Siluriformes) in relation to the orogeny of the Himalayan Plateau
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Phylogenetic tree-building
inferred← citeshttps://doi.org/10.1016/0378-1097(96)00345-xopenalex-snapshot
Phylogenetic analysis of tnpR. genes in mercury resistant soil bacteria: the relationship between DNA sequencing and RFLP typing approaches
inferred← citeshttps://doi.org/10.1016/0924-7963(96)00013-9openalex-snapshot
Genetic characterisation of Emiliania huxleyi (Haptophyta)
inferred← citeshttps://doi.org/10.1016/b978-0-444-62710-0.00001-8openalex-snapshot
Reconciling Morphological and Molecular Approaches in Developing a Phylogeny for the Pectinidae (Mollusca: Bivalvia)
inferred← citeshttps://doi.org/10.1016/b978-012088483-4/50012-3openalex-snapshot
Molecular Epidemiology and Forensics of RNA Viruses
inferred← citeshttps://doi.org/10.1016/b978-012370518-1/50007-2openalex-snapshot
Photosynthesis and the Eukaryote Tree of Life
inferred← citeshttps://doi.org/10.1016/b978-012415031-7/50047-1openalex-snapshot
Bibliography
inferred← citeshttps://doi.org/10.1016/b978-012417540-2/50014-2openalex-snapshot
Interrelationships of Lamniform Sharks: Testing Phylogenetic Hypotheses with Sequence Data
inferred← citeshttps://doi.org/10.1016/b978-012498315-1/50014-5openalex-snapshot
Phylogenetic Relationships among and within Select Avian Orders Based on Mitochondrial DNA
inferred← citeshttps://doi.org/10.1016/b978-012509551-8/50035-0openalex-snapshot
LITERATURE CITED
inferred← citeshttps://doi.org/10.1016/b978-012738445-0/50022-8openalex-snapshot
Genetic Variation and Evolution
inferred← citeshttps://doi.org/10.1016/b978-012764051-8/50005-6openalex-snapshot
The Genetic Diversity and Global Molecular Epidemiology of HIV
inferred← citeshttps://doi.org/10.1016/b978-044481312-1/50122-2openalex-snapshot
References
inferred← citeshttps://doi.org/10.1016/j.biosystems.2009.09.003openalex-snapshot
Mitochondrial tRNAs as light strand replication origins: Similarity between anticodon loops and the loop of the light strand replication origin predicts initiation of DNA replication
inferred← citeshttps://doi.org/10.1016/j.ejop.2003.12.002openalex-snapshot
Phylogeny of Heteromita, Cercomonas and Thaumatomonas based on SSU rDNA sequences, including the description of Neocercomonas jutlandica sp. nov., gen. nov.
inferred← citeshttps://doi.org/10.1016/j.gene.2020.144436openalex-snapshot
Accretion history of large ribosomal subunits deduced from theoretical minimal RNA rings is congruent with histories derived from phylogenetic and structural methods
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2022.10.277openalex-snapshot
Characterization of mitochondrial genome of Indian Ocean blue-spotted maskray, Neotrygon indica and its phylogenetic relationship within Dasyatidae Family
inferred← citeshttps://doi.org/10.1016/j.jbi.2005.04.001openalex-snapshot
Missing data and the design of phylogenetic analyses
inferred← citeshttps://doi.org/10.1016/j.jcv.2006.10.001openalex-snapshot
Characterizing 56 complete SARS-CoV S-gene sequences from Hong Kong
inferred← citeshttps://doi.org/10.1016/j.jmb.2004.02.006openalex-snapshot
Molecular Evolution of the Histone Deacetylase Family: Functional Implications of Phylogenetic Analysis
inferred← citeshttps://doi.org/10.1016/j.jmb.2016.04.005openalex-snapshot
Resolution of Specific Nucleotide Mismatches by Wild-Type and AZT-Resistant Reverse Transcriptases during HIV-1 Replication
inferred← citeshttps://doi.org/10.1016/j.jtbi.2010.03.019openalex-snapshot
Positive correlations between molecular and morphological rates of evolution
inferred← citeshttps://doi.org/10.1016/j.marenvres.2023.105926openalex-snapshot
An exhaustive evaluation of modeling ecological niches above species level to predict marine biological invasions
inferred← citeshttps://doi.org/10.1016/j.meegid.2008.04.003openalex-snapshot
Rate heterogeneity in the evolution of Helicobacter pylori and the behavior of homoplastic sites
inferred← citeshttps://doi.org/10.1016/j.tcb.2004.07.009openalex-snapshot
Actin and ARPs: action in the nucleus
inferred← citeshttps://doi.org/10.1016/j.virol.2003.08.004openalex-snapshot
Characterization of novel recombinant HIV-1 genomes using the branching index
inferred← citeshttps://doi.org/10.1016/j.virol.2004.09.015openalex-snapshot
Influence of CD4+ T cell counts on viral evolution in HIV-infected individuals undergoing suppressive HAART
inferred← citeshttps://doi.org/10.1016/j.virol.2007.07.010openalex-snapshot
HIV-1 infection of monocytes is directly related to the success of HAART
inferred← citeshttps://doi.org/10.1016/j.virusres.2012.03.002openalex-snapshot
Assessment of phylogenetic sensitivity for reconstructing HIV-1 epidemiological relationships
inferred← citeshttps://doi.org/10.1016/j.ympev.2003.08.004openalex-snapshot
Efficiently resolving the basal clades of a phylogenetic tree using Bayesian and parsimony approaches: a case study using mitogenomic data from 100 higher teleost fishes
inferred← citeshttps://doi.org/10.1016/j.ympev.2003.12.009openalex-snapshot
Phylogeny of the orchid bees (Hymenoptera: Apinae: Euglossini): DNA and morphology yield equivalent patterns
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.02.007openalex-snapshot
The phylogeny of acorn weevils (genus Curculio) from mitochondrial and nuclear DNA sequences: the problem of incomplete data
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.02.019openalex-snapshot
Phylogeny and host-specificity of European seed beetles (Coleoptera, Bruchidae), new insights from molecular and ecological data
inferred← citeshttps://doi.org/10.1016/j.ympev.2004.06.018openalex-snapshot
Phylogenetic position of Platanista gangetica: insights from the mitochondrial cytochrome b and nuclear interphotoreceptor retinoid-binding protein gene sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.03.010openalex-snapshot
Evolutionary relationships of the cup-fungus genus Peziza and Pezizaceae inferred from multiple nuclear genes: RPB2, β-tubulin, and LSU rDNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.04.034openalex-snapshot
Phylogeny and biogeography of the freshwater crayfish Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.02.028openalex-snapshot
Why weight?
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.04.030openalex-snapshot
Exploring tree-building methods and distinct molecular data to recover a known asymmetric phage phylogeny
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.12.015openalex-snapshot
Reconstructing the phylogenetic relationships of the earth’s most diverse clade of freshwater fishes—order Cypriniformes (Actinopterygii: Ostariophysi): A case study using multiple nuclear loci and the mitochondrial genome
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.04.019openalex-snapshot
BOOL-AN: A method for comparative sequence analysis and phylogenetic reconstruction
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.06.009openalex-snapshot
Genes with minimal phylogenetic information are problematic for coalescent analyses when gene tree estimation is biased
inferred← citeshttps://doi.org/10.1016/s0003-9365(97)80011-5openalex-snapshot
Phylogeny of the Characeae (charophyta) inferred from organismal and molecular characters
inferred← citeshttps://doi.org/10.1016/s0022-2836(02)00239-5openalex-snapshot
Detecting Compensatory Covariation Signals in Protein Evolution Using Reconstructed Ancestral Sequences
inferred← citeshttps://doi.org/10.1016/s0065-2571(02)00024-9openalex-snapshot
Interpretive proteomics—finding biological meaning in genome and proteome databases
inferred← citeshttps://doi.org/10.1016/s0097-8485(96)80008-8openalex-snapshot
Improving the analysis of phylogenetic data
inferred← citeshttps://doi.org/10.1016/s0165-5728(97)00225-7openalex-snapshot
Cocaine abuse and HIV-1 infection: Epidemiology and neuropathogenesis
inferred← citeshttps://doi.org/10.1016/s0166-6851(98)00129-7openalex-snapshot
Molecular cloning and characterization of the genes encoding two isoforms of cysteine synthase in the enteric protozoan parasite Entamoeba histolytica
inferred← citeshttps://doi.org/10.1016/s0168-9525(03)00112-4openalex-snapshot
Phylogeny for the faint of heart: a tutorial
inferred← citeshttps://doi.org/10.1016/s0169-5347(00)89005-9openalex-snapshot
Phylogenetic tests of the sensory exploitation model of sexual selection
inferred← citeshttps://doi.org/10.1016/s0169-5347(00)89120-xopenalex-snapshot
Molecular phylogeny of cetaceans prompts revision of morphological transformations
inferred← citeshttps://doi.org/10.1016/s0305-1978(98)00015-5openalex-snapshot
Pheromone evolution within the genera Ctenopseustis and Planotortrix (Lepidoptera: Tortricidae) inferred from a phylogeny based on cytochrome oxidase I gene variation
inferred← citeshttps://doi.org/10.1016/s0952-7915(96)80075-6openalex-snapshot
HIV causes AIDS: Koch's postulates fulfilled
inferred← citeshttps://doi.org/10.1016/s0960-9822(97)70070-8openalex-snapshot
Phylogenetic analysis
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00012-xopenalex-snapshot
Molecular phylogenetic analysis of Fringillidae, “New World nine-primaried oscines” (Aves: Passeriformes)
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00027-1openalex-snapshot
One hundred and seventeen clades of euagarics
inferred← citeshttps://doi.org/10.1016/s1055-7903(03)00123-4openalex-snapshot
Molecular genetic identification of crustose representatives of the order Corallinales (Rhodophyta) in Chile
inferred← citeshttps://doi.org/10.1017/cbo9780511606816openalex-snapshot
Ecology and Evolution of Cooperative Breeding in Birds
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.001openalex-snapshot
Introduction
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.002openalex-snapshot
Evolutionary origins
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.003openalex-snapshot
Delayed dispersal
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.004openalex-snapshot
Fitness consequences of helping
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.005openalex-snapshot
Parental care, load-lightening, and costs
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.006openalex-snapshot
Mating systems and sexual conflict
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.007openalex-snapshot
Sex-ratio manipulation
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.008openalex-snapshot
Physiological ecology
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.009openalex-snapshot
Endocrinology
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.010openalex-snapshot
Incest and incest avoidance
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.011openalex-snapshot
Reproductive skew
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.012openalex-snapshot
Joint laying systems
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.013openalex-snapshot
Conservation biology
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.014openalex-snapshot
Mammals: comparisons and contrasts
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.015openalex-snapshot
Summary
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.016openalex-snapshot
Names of bird and mammal species mentioned in the text
inferred← citeshttps://doi.org/10.1017/cbo9780511606816.017openalex-snapshot
References
inferred← citeshttps://doi.org/10.1017/s0006323198005167openalex-snapshot
A revised six-kingdom system of life
inferred← citeshttps://doi.org/10.1017/s0016672301009582openalex-snapshot
The biological improbability of a clone
inferred← citeshttps://doi.org/10.1017/s0022336000032996openalex-snapshot
Stratigraphy in phylogeny reconstruction
inferred← citeshttps://doi.org/10.1017/s1062798710000219openalex-snapshot
Is Darwinism Past its ‘Sell-By’ Date? TheOrigin of Speciesat 150
inferred← citeshttps://doi.org/10.1017/s2475262200009916openalex-snapshot
Molecules and Evolutionary History
inferred← citeshttps://doi.org/10.1017/s2475262200014118openalex-snapshot
Molecules and Evolutionary History
inferred← citeshttps://doi.org/10.1021/ci6003527openalex-snapshot
Analysis of Ligand-Bound Water Molecules in High-Resolution Crystal Structures of Protein−Ligand Complexes
inferred← citeshttps://doi.org/10.1021/ci700285eopenalex-snapshot
Ligand−Protein Docking with Water Molecules
inferred← citeshttps://doi.org/10.1021/ja058042gopenalex-snapshot
Binding Free Energy Contributions of Interfacial Waters in HIV-1 Protease/Inhibitor Complexes
inferred← citeshttps://doi.org/10.1021/jm049187lopenalex-snapshot
Structural Requirements for Factor Xa Inhibition by 3-Oxybenzamides with Neutral P1 Substituents: Combining X-ray Crystallography, 3D-QSAR, and Tailored Scoring Functions
inferred← citeshttps://doi.org/10.1023/a:1017060902909openalex-snapshot
The evolutionary relationships of rotifers and acanthocephalans
inferred← citeshttps://doi.org/10.1023/a:1017502923286openalex-snapshot
Early contributions of molecular phylogenetics to understanding the evolution of Rotifera
inferred← citeshttps://doi.org/10.1038/35016575openalex-snapshot
Language trees support the express-train sequence of Austronesian expansion
inferred← citeshttps://doi.org/10.1038/374012a0openalex-snapshot
Active ancestral molecules
inferred← citeshttps://doi.org/10.1038/374057a0openalex-snapshot
Reconstructing the evolutionary history of the artiodactyl ribonuclease superfamily
inferred← citeshttps://doi.org/10.1038/nature02917openalex-snapshot
Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous
inferred← citeshttps://doi.org/10.1038/s41598-020-64627-8openalex-snapshot
Comparisons between small ribosomal RNA and theoretical minimal RNA ring secondary structures confirm phylogenetic and structural accretion histories
inferred← citeshttps://doi.org/10.1038/sj.embor.7400358openalex-snapshot
Laptop biology
inferred← citeshttps://doi.org/10.1046/j.0962-1075.2001.00269.xopenalex-snapshot
Molecular phylogeny of Diabrotica beetles (Coleoptera: Chrysomelidae) inferred from analysis of combined mitochondrial and nuclear DNA sequences
inferred← citeshttps://doi.org/10.1046/j.1365-2583.1998.72058.xopenalex-snapshot
Evolutionary relationships among the Braconidae (Hymenoptera: Ichneumonoidea) inferred from partial 16S rDNA gene sequences
inferred← citeshttps://doi.org/10.1046/j.1365-294x.1998.00380.xopenalex-snapshot
Molecular genetic identification of southern hemisphere beaked whales (Cetacea: Ziphiidae)
inferred← citeshttps://doi.org/10.1046/j.1365-294x.1998.00462.xopenalex-snapshot
Geographic analysis of nucleotide diversity and song sparrow (Aves: Emberizidae) population history
inferred← citeshttps://doi.org/10.1046/j.1365-294x.2001.01295.xopenalex-snapshot
Phylogeography and conservation genetics of the Columbia spotted frog (Rana luteiventris; Amphibia, Ranidae)
inferred← citeshttps://doi.org/10.1046/j.1365-294x.2004.02106.xopenalex-snapshot
Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context
inferred← citeshttps://doi.org/10.1046/j.1365-3113.1999.00088.xopenalex-snapshot
Phylogeny of carabid beetles as inferred from 18S ribosomal DNA (Coleoptera: Carabidae)
inferred← citeshttps://doi.org/10.1046/j.1461-9563.2002.00132.xopenalex-snapshot
A molecular identification key for economically important thrips species (Thysanoptera: Thripidae) using direct sequencing and a PCR‐RFLP‐based approach
inferred← citeshttps://doi.org/10.1046/j.1525-142x.2003.03030.xopenalex-snapshot
Expression of enhancers is altered in Drosophila melanogaster hybrids
inferred← citeshttps://doi.org/10.1071/is06002openalex-snapshot
Molecular analyses of the Apocrita (Insecta : Hymenoptera) suggest that the Chalcidoidea are sister to the diaprioid complex
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