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Maximum Likelihood Inference of Phylogenetic Trees, with Special Reference to a Poisson Process Model of DNA Substitution and to Parsimony Analyses
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf01659159openalex-snapshot
Theoretical foundations for a quantitative approach to paleogenetics
inferredcites →https://doi.org/10.1007/bf01731370openalex-snapshot
A new estimate of sequence divergence of mitochondrial DNA using restriction endonuclease mappings
inferredcites →https://doi.org/10.1007/bf01734359openalex-snapshot
Evolutionary trees from DNA sequences: A maximum likelihood approach
inferredcites →https://doi.org/10.1016/0012-365x(76)90141-2openalex-snapshot
An algebraic analysis of cladistic characters
inferredcites →https://doi.org/10.1016/0022-2836(86)90289-5openalex-snapshot
Maximum likelihood alignment of DNA sequences
inferredcites →https://doi.org/10.1016/0022-5193(83)90296-5openalex-snapshot
Computationally difficult parsimony problems in phylogenetic systematics
inferredcites →https://doi.org/10.1016/0025-5564(75)90040-1openalex-snapshot
An idealized concept of the true cladistic character
inferredcites →https://doi.org/10.1016/0025-5564(76)90035-3openalex-snapshot
A mathematical foundation for the analysis of cladistic character compatibility
inferredcites →https://doi.org/10.1016/0025-5564(82)90125-0openalex-snapshot
Unlikelihood that minimal phylogenies for a realistic biological study can be constructed in reasonable computational time
inferredcites →https://doi.org/10.1016/0025-5564(86)90161-6openalex-snapshot
The computational complexity of inferring rooted phylogenies by parsimony
inferredcites →https://doi.org/10.1016/b978-1-4832-3211-9.50009-7openalex-snapshot
Evolution of Protein Molecules
inferredcites →https://doi.org/10.1017/9781316276259.010openalex-snapshot
Phylogenetic analysis: models and estimation procedures
inferredcites →https://doi.org/10.1037/0022-3514.36.9.941openalex-snapshot
Reconstructing the past: Some cognitive consequences of person perception.
inferredcites →https://doi.org/10.1073/pnas.63.4.1181openalex-snapshot
THE RATE OF MOLECULAR EVOLUTION CONSIDERED FROM THE STANDPOINT OF POPULATION GENETICS
inferredcites →https://doi.org/10.1086/283157openalex-snapshot
On the Problem of Discovering the Most Parsimonious Tree
inferredcites →https://doi.org/10.1093/ajcp/15.11.552bopenalex-snapshot
Statistical Methods for Research Workers
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040574openalex-snapshot
A molecular view of primate phylogeny and important systematic and evolutionary questions.
inferredcites →https://doi.org/10.1093/sysbio/22.3.240openalex-snapshot
Maximum Likelihood and Minimum-Steps Methods for Estimating Evolutionary Trees from Data on Discrete Characters
inferredcites →https://doi.org/10.1093/sysbio/22.3.250openalex-snapshot
A Probability Model for Inferring Evolutionary Trees
inferredcites →https://doi.org/10.1093/sysbio/23.4.513openalex-snapshot
The Uniquely Evolved Character Concept and its Cladistic Application
inferredcites →https://doi.org/10.1093/sysbio/24.3.311openalex-snapshot
Detecting Evolutionary Incompatibilities From Protein Sequences
inferredcites →https://doi.org/10.1093/sysbio/26.1.77openalex-snapshot
Phylogenetic Analysis Under Dollo's Law
inferredcites →https://doi.org/10.1093/sysbio/27.4.401openalex-snapshot
Cases in which Parsimony or Compatibility Methods will be Positively Misleading
inferredcites →https://doi.org/10.1093/sysbio/28.1.49openalex-snapshot
Alternative Methods of Phylogenetic Inference and their Interrelationship
inferredcites →https://doi.org/10.1098/rspb.1985.0096openalex-snapshot
Evolutionary trees from nucleic acid and protein sequences
inferredcites →https://doi.org/10.1101/sqb.1964.029.01.006openalex-snapshot
Analysis of Human Evolution Under Random Genetic Drift
inferredcites →https://doi.org/10.1111/j.1095-8312.1981.tb01847.xopenalex-snapshot
A likelihood approach to character weighting and what it tells us about parsimony and compatibility
inferredcites →https://doi.org/10.1111/j.1096-0031.1985.tb00424.xopenalex-snapshot
A LIKELIHOOD JUSTIFICATION OF PARSIMONY
inferredcites →https://doi.org/10.1111/j.1096-0031.1986.tb00454.xopenalex-snapshot
STATISTICAL COVARIANCE AS A MEASURE OF PHYLOGENETIC RELATIONSHIP
inferredcites →https://doi.org/10.1111/j.1558-5646.1965.tb01722.xopenalex-snapshot
A METHOD FOR DEDUCING BRANCHING SEQUENCES IN PHYLOGENY
inferredcites →https://doi.org/10.1111/j.2517-6161.1970.tb00828.xopenalex-snapshot
Estimation of the Branch Points of a Branching Diffusion Process
inferredcites →https://doi.org/10.1111/j.2517-6161.1970.tb00830.xopenalex-snapshot
Application of Likelihood Methods to Models Involving Large Numbers of Parameters
inferredcites →https://doi.org/10.1111/j.2517-6161.1970.tb00842.xopenalex-snapshot
Asymptotic Properties of Conditional Maximum-Likelihood Estimators
inferredcites →https://doi.org/10.1146/annurev.es.14.110183.001525openalex-snapshot
Parsimony in Systematics: Biological and Statistical Issues
inferredcites →https://doi.org/10.1146/annurev.es.14.110183.002003openalex-snapshot
Parsimony in Systematics: Philosophical Issues
inferredcites →https://doi.org/10.1214/aoms/1177728066openalex-snapshot
Consistency of the Maximum Likelihood Estimator in the Presence of Infinitely Many Incidental Parameters
inferredcites →https://doi.org/10.1214/aoms/1177729952openalex-snapshot
Note on the Consistency of the Maximum Likelihood Estimate
inferredcites →https://doi.org/10.1214/aoms/1177731868openalex-snapshot
The Fitting of Straight Lines if Both Variables are Subject to Error
inferredcites →https://doi.org/10.2307/1220730openalex-snapshot
A SIMPLE TEST FOR THE POSSIBLE SIMULTANEOUS EVOLUTIONARY DIVERGENCE OF TWO AMINO ACID POSITIONS
inferredcites →https://doi.org/10.2307/1914288openalex-snapshot
Consistent Estimates Based on Partially Consistent Observations
inferredcites →https://doi.org/10.2307/2411550openalex-snapshot
A Consistency Test for Phylogenies Based on Contemporaneous Species
inferredcites →https://doi.org/10.2307/2412604openalex-snapshot
A Method of Selection of Characters in Numerical Taxonomy
inferredcites →https://doi.org/10.2307/2413121openalex-snapshot
Parsimony and Likelihood: An Exchange
inferredcites →https://doi.org/10.2307/2992396openalex-snapshot
A Framework for the Quantitative Study of Evolutionary Trees
inferredcites →https://doi.org/10.5860/choice.45-6219openalex-snapshot
Probability and statistical inference
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.3825.1.1zenodo-depositor-declared
Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
inferred← citeshttps://doi.org/10.1002/(sici)1521-1878(199804)20:4<287::aid-bies4>3.0.co;2-nopenalex-snapshot
Effects of sequence alignment procedures on estimates of phylogeny
inferred← citeshttps://doi.org/10.1002/0470022620.bbc13openalex-snapshot
Application of the Likelihood Function in Phylogenetic Analysis
inferred← citeshttps://doi.org/10.1002/0471250953.bi0608s05openalex-snapshot
Using PEBBLE for the Evolutionary Analysis of Serially Sampled Molecular Sequences
inferred← citeshttps://doi.org/10.1002/ajpa.1330940103openalex-snapshot
Molecular evidence on Primate phylogeny from DNA sequences
inferred← citeshttps://doi.org/10.1006/clad.1997.0046openalex-snapshot
Probabilism and Phylogenetic Inference
inferred← citeshttps://doi.org/10.1006/mpev.1999.0671openalex-snapshot
Nested Clade and Phylogeographic Analyses of the Chub, Leuciscus cephalus (Teleostei, Cyprinidae), in Greece: Implications for Balkan Peninsula Biogeography
inferred← citeshttps://doi.org/10.1006/mpev.2000.0816openalex-snapshot
Slicing Hyperdimensional Oranges: The Geometry of Phylogenetic Estimation
inferred← citeshttps://doi.org/10.1007/0-387-27733-1_7openalex-snapshot
Bayesian Analysis of Molecular Evolution Using MrBayes
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_4openalex-snapshot
Homology in Molecular Phylogenetics: A Parsimony Perspective
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_5openalex-snapshot
Maximum Likelihood as an Alternative to Parsimony for Inferring Phylogeny Using Nucleotide Sequence Data
inferred← citeshttps://doi.org/10.1007/978-1-4615-5419-6_6openalex-snapshot
Patterns of Sequence Evolution and Implications for Parsimony Analysis of Chloroplast DNA
inferred← citeshttps://doi.org/10.1007/978-3-540-33761-4_5openalex-snapshot
5 Quantitative Approaches to Phylogenetics
inferred← citeshttps://doi.org/10.1007/978-3-540-39763-2_16openalex-snapshot
Ancestral Maximum Likelihood of Evolutionary Trees Is Hard
inferred← citeshttps://doi.org/10.1007/978-3-642-27800-6_5-6openalex-snapshot
Quantitative Approaches to Phylogenetics
inferred← citeshttps://doi.org/10.1007/978-3-642-39979-4_5openalex-snapshot
Quantitative Approaches to Phylogenetics
inferred← citeshttps://doi.org/10.1007/978-94-009-0019-6_64openalex-snapshot
Constructing Phylogenies from Discrete Data — Maximum Likelihood
inferred← citeshttps://doi.org/10.1007/bf00166252openalex-snapshot
Statistical tests of models of DNA substitution
inferred← citeshttps://doi.org/10.1007/bf00178256openalex-snapshot
Estimating the pattern of nucleotide substitution
inferred← citeshttps://doi.org/10.1007/bf00182751openalex-snapshot
Simple diagnostic statistical tests of models for DNA substitution
inferred← citeshttps://doi.org/10.1007/bf01718322openalex-snapshot
Pathogenicity and phylogenetic evaluation of the variant Newcastle disease viruses termed “pigeon PMV-1 viruses” based on the nucleotide sequence of the fusion protein gene
inferred← citeshttps://doi.org/10.1007/bf02198856openalex-snapshot
Phylogenetic analysis using parsimony and likelihood methods
inferred← citeshttps://doi.org/10.1007/bf02338839openalex-snapshot
Probability Distribution of Molecular Evolutionary Trees: A New Method of Phylogenetic Inference
inferred← citeshttps://doi.org/10.1007/bf02459467openalex-snapshot
Links between maximum likelihood and maximum parsimony under a simple model of site substitution
inferred← citeshttps://doi.org/10.1007/bf02498640openalex-snapshot
Model of Amino Acid Substitution in Proteins Encoded by Mitochondrial DNA
inferred← citeshttps://doi.org/10.1007/s00239-020-09982-wopenalex-snapshot
Felsenstein Phylogenetic Likelihood
inferred← citeshttps://doi.org/10.1007/s00425-014-2162-7openalex-snapshot
Sunflower (Helianthus annuus) fatty acid synthase complex: enoyl-[acyl carrier protein]-reductase genes
inferred← citeshttps://doi.org/10.1007/s10535-016-0649-8openalex-snapshot
A plant biologists' guide to phylogenetic analysis of biological macromolecule sequences
inferred← citeshttps://doi.org/10.1007/s10539-017-9577-zopenalex-snapshot
When is a cladist not a cladist?
inferred← citeshttps://doi.org/10.1007/springerreference_135040openalex-snapshot
Quantitative Approaches to Phylogenetics
inferred← citeshttps://doi.org/10.1016/0167-9473(96)88919-5openalex-snapshot
Probabilistic models in cluster analysis
inferred← citeshttps://doi.org/10.1016/0169-5347(92)90244-6openalex-snapshot
Progress with methods for constructing evolutionary trees
inferred← citeshttps://doi.org/10.1016/0305-0491(92)90061-uopenalex-snapshot
The inference of evolutionary trees from molecular data
inferred← citeshttps://doi.org/10.1016/b978-012676460-4/50014-7openalex-snapshot
RECONSTRUCTING ANCESTRAL TRAIT VALUES USING SQUARED-CHANGE PARSIMONY: PLASMA OSMOLARITY AT THE ORIGIN OF AMNIOTES
inferred← citeshttps://doi.org/10.1016/j.cladistics.2003.10.002openalex-snapshot
Brooks Parsimony Analysis: a valiant failure
inferred← citeshttps://doi.org/10.1016/j.funbio.2015.04.007openalex-snapshot
DNA barcoding of fungi causing infections in humans and animals
inferred← citeshttps://doi.org/10.1016/j.indcrop.2023.116798openalex-snapshot
Transcriptome and metabolome analysis of sesquiterpene diversity in Indian vetiver (Chrysopogon zizanioides L. Roberty)
inferred← citeshttps://doi.org/10.1016/j.ins.2020.08.102openalex-snapshot
DNA sequence reconstruction based on innovated hybridization technique of probabilistic cellular automata and particle swarm optimization
inferred← citeshttps://doi.org/10.1016/j.parint.2023.102750openalex-snapshot
Detection of Toxoplasma gondii DNA in milk of dairy cows from southern Brazil
inferred← citeshttps://doi.org/10.1016/j.rvsc.2022.04.018openalex-snapshot
A study of risk factors associated with Newcastle disease and molecular characterization of genotype XIII Newcastle disease virus in backyard and commercial poultry in Assam, India
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.07.003openalex-snapshot
An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.10.027openalex-snapshot
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
inferred← citeshttps://doi.org/10.1016/s0065-308x(06)63001-7openalex-snapshot
Phylogenetic Analyses of Parasites in the New Millennium
inferred← citeshttps://doi.org/10.1016/s0168-9525(01)02272-7openalex-snapshot
Molecular phylogenetics: state-of-the-art methods for looking into the past
inferred← citeshttps://doi.org/10.1016/s0169-5347(97)83196-5openalex-snapshot
Are big trees indeed easy?
inferred← citeshttps://doi.org/10.1016/s0748-3007(03)00074-4openalex-snapshot
Data exploration in phylogenetic inference: scientific, heuristic, or neither
inferred← citeshttps://doi.org/10.1016/s0960-9822(00)00131-7openalex-snapshot
A molecular evolutionary framework for eukaryotic model organisms
inferred← citeshttps://doi.org/10.1017/s0006323196004926openalex-snapshot
CONVERGENT EVOLUTION IN INVERTEBRATES
inferred← citeshttps://doi.org/10.1017/s108933260000187xopenalex-snapshot
Probabilistic Phylogenetic Inference in the Fossil Record: Current and Future Applications
inferred← citeshttps://doi.org/10.1017/s1477200007002290openalex-snapshot
Phylogeny of snakes (Serpentes): Combining morphological and molecular data in likelihood, Bayesian and parsimony analyses
inferred← citeshttps://doi.org/10.1017/s1748499518000337openalex-snapshot
Analysis of financial events under an assumption of complexity
inferred← citeshttps://doi.org/10.1017/s2475263000002142openalex-snapshot
Phylogenetic Analysis and its Application in Evolutionary Paleobiology
inferred← citeshttps://doi.org/10.1046/j.1420-9101.1999.00070.xopenalex-snapshot
Circularity, evolution, systematics … and circularity
inferred← citeshttps://doi.org/10.1071/is02016openalex-snapshot
Systematics and biogeography of the family Scorpionidae (Chelicerata : Scorpiones), with a discussion on phylogenetic methods
inferred← citeshttps://doi.org/10.1080/10618600.1997.10474731openalex-snapshot
Phylogenetic Inference for Binary Data on Dendograms Using Markov Chain Monte Carlo
inferred← citeshttps://doi.org/10.1080/10635150119615openalex-snapshot
Philosophical Conjectures and Their Refutation
inferred← citeshttps://doi.org/10.1080/106351501753462803openalex-snapshot
Exploring Data Interaction and Nucleotide Alignment in a Multiple Gene Analysis of Ips (Coleoptera: Scolytinae)
inferred← citeshttps://doi.org/10.1080/106351501753462876openalex-snapshot
A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
inferred← citeshttps://doi.org/10.1080/10635150290102366openalex-snapshot
Potential Applications and Pitfalls of Bayesian Inference of Phylogeny
inferred← citeshttps://doi.org/10.1080/10635150490468657openalex-snapshot
The Contest Between Parsimony and Likelihood
inferred← citeshttps://doi.org/10.1080/10635150490522304openalex-snapshot
Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
inferred← citeshttps://doi.org/10.1080/10635150600755396openalex-snapshot
The Phylogeny of Early Eureptiles: Comparing Parsimony and Bayesian Approaches in the Investigation of a Basal Fossil Clade
inferred← citeshttps://doi.org/10.1080/10635150802166046openalex-snapshot
A Bayesian Perspective on a Non-parsimonious Parsimony Model
inferred← citeshttps://doi.org/10.1080/106351598261049openalex-snapshot
A Fast Method for Approximating Maximum Likelihoods of Phylogenetic Trees from Nucleotide Sequences
inferred← citeshttps://doi.org/10.1089/106652701300099137openalex-snapshot
Hitch-Hiking: A Parallel Heuristic Search Strategy, Applied to the Phylogeny Problem
inferred← citeshttps://doi.org/10.1089/cmb.1994.1.133openalex-snapshot
The Effects of Sequence Length, Tree Topology, and Number of Taxa on the Performance of Phylogenetic Methods
inferred← citeshttps://doi.org/10.1089/cmb.2022.0197openalex-snapshot
Evaluating Compression-Based Phylogeny Estimation in the Presence of Incomplete Lineage Sorting
inferred← citeshttps://doi.org/10.1089/vbz.2017.2111openalex-snapshot
Molecular Epidemiological Survey and Genetic Characterization of Anaplasma Species in Mongolian Livestock
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.001.0001openalex-snapshot
Computational Molecular Evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.002.0004openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0001openalex-snapshot
Models of nucleotide substitution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0002openalex-snapshot
Models of amino acid and codon substitution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0003openalex-snapshot
Phylogeny reconstruction: overview
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0004openalex-snapshot
Maximum likelihood methods
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0005openalex-snapshot
Bayesian methods
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0006openalex-snapshot
Comparison of methods and tests on trees
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0007openalex-snapshot
Molecular clock and estimation of species divergence times
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0008openalex-snapshot
Neutral and adaptive protein evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0009openalex-snapshot
Simulating molecular evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780198567028.003.0010openalex-snapshot
Perspectives
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199297306.001.0001openalex-snapshot
Parsimony, Phylogeny, and Genomics
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199297306.003.0008openalex-snapshot
Parsimony and Bayesian phylogenetics
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.001.0001openalex-snapshot
Molecular Evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0001openalex-snapshot
Models of nucleotide substitution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0002openalex-snapshot
Models of amino acid and codon substitution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0003openalex-snapshot
Phylogeny reconstruction: overview
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0004openalex-snapshot
Maximum likelihood methods
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0005openalex-snapshot
Comparison of phylogenetic methods and tests on trees
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0006openalex-snapshot
Bayesian theory
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0007openalex-snapshot
Bayesian computation (MCMC)
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0008openalex-snapshot
Bayesian phylogenetics
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0009openalex-snapshot
Coalescent theory and species trees
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0010openalex-snapshot
Molecular clock and estimation of species divergence times
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0011openalex-snapshot
Neutral and adaptive protein evolution
inferred← citeshttps://doi.org/10.1093/acprof:oso/9780199602605.003.0012openalex-snapshot
Simulating molecular evolution
inferred← citeshttps://doi.org/10.1093/database/baaf052openalex-snapshot
Empirical substitution models of protein evolution: database, relationships, and modeling considerations
inferred← citeshttps://doi.org/10.1093/genetics/132.2.619openalex-snapshot
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation.
inferred← citeshttps://doi.org/10.1093/genetics/141.4.1641openalex-snapshot
A new method of inference of ancestral nucleotide and amino acid sequences.
inferred← citeshttps://doi.org/10.1093/molbev/msg215openalex-snapshot
Inferring Evolutionary Rates Using Serially Sampled Sequences from Several Populations
inferred← citeshttps://doi.org/10.1093/molbev/msz128openalex-snapshot
Joint Maximum Likelihood of Phylogeny and Ancestral States Is Not Consistent
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a003920openalex-snapshot
The Inference of Stepwise Changes in Substitution Rates Using Serial Sequence Samples
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a025556openalex-snapshot
Tempo and mode of synonymous substitutions in mitochondrial DNA of primates
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a025691openalex-snapshot
When is it safe to use an oversimplified substitution model in tree- making?
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a025851openalex-snapshot
Comment on the Quartet Puzzling Method for Finding Maximum-Likelihood Tree Topologies
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a025991openalex-snapshot
Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a026252openalex-snapshot
Multiple Maxima of Likelihood in Phylogenetic Trees: An Analytic Approach
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a026364openalex-snapshot
Parsimony, Likelihood, and the Role of Models in Molecular Phylogenetics
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040082openalex-snapshot
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites.
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040112openalex-snapshot
Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
inferred← citeshttps://doi.org/10.1093/oxfordjournals.molbev.a040740openalex-snapshot
The consistency of several phylogeny-inference methods under varying evolutionary rates.
inferred← citeshttps://doi.org/10.1093/pcp/pcac090openalex-snapshot
Structural Characterization of L-Galactose Dehydrogenase: An Essential Enzyme for Vitamin C Biosynthesis
inferred← citeshttps://doi.org/10.1093/sysbio/42.1.1openalex-snapshot
Does Cladistic Information Affect Inferences About Branching Rates?
inferred← citeshttps://doi.org/10.1093/sysbio/43.2.222openalex-snapshot
Intraspecific Cladogram Estimation: Accuracy at Higher Levels of Divergence
inferred← citeshttps://doi.org/10.1093/sysbio/43.3.329openalex-snapshot
Statistical Properties of the Maximum Likelihood Method of Phylogenetic Estimation and Comparison With Distance Matrix Methods
inferred← citeshttps://doi.org/10.1093/sysbio/43.4.560openalex-snapshot
The Maximum Likelihood Point for a Phylogenetic Tree is Not Unique
inferred← citeshttps://doi.org/10.1093/sysbio/44.3.299openalex-snapshot
Objections to Bootstrapping Phylogenies: A Critique
inferred← citeshttps://doi.org/10.1093/sysbio/44.3.384openalex-snapshot
Maximum Likelihood Trees from DNA Sequences: A Peculiar Statistical Estimation Problem
inferred← citeshttps://doi.org/10.1093/sysbio/45.1.79openalex-snapshot
The Origin and Early Development of the Method of Minimum Evolution for the Reconstruction of Phylogenetic Trees
inferred← citeshttps://doi.org/10.1093/sysbio/45.4.596openalex-snapshot
Corrected Parsimony, Minimum Evolution, and Hadamard Conjugations
inferred← citeshttps://doi.org/10.1093/sysbio/46.3.426openalex-snapshot
Phylogeography and Molecular Systematics of the Peromyscus Aztecus Species Group (Rodentia: Muridae) Inferred Using Parsimony and Likelihood
inferred← citeshttps://doi.org/10.1093/sysbio/49.2.278openalex-snapshot
Phylogenetic Relationships of Agaric Fungi Based on Nuclear Large Subunit Ribosomal DNA Sequences
inferred← citeshttps://doi.org/10.1093/sysbio/syab069openalex-snapshot
Accuracy in Near-Perfect Virus Phylogenies
inferred← citeshttps://doi.org/10.1093/sysbio/syaf051openalex-snapshot
Phylogenetic Analysis of Characters with Dependencies under Maximum Likelihood
inferred← citeshttps://doi.org/10.1093/sysbio/syq028openalex-snapshot
The Akaike Information Criterion Will Not Choose the No Common Mechanism Model
inferred← citeshttps://doi.org/10.1093/sysbio/syq089openalex-snapshot
Biologically Inspired Phylogenetic Models Strongly Outperform the No Common Mechanism Model
inferred← citeshttps://doi.org/10.1093/sysbio/syu064openalex-snapshot
Popperian Corroboration and Phylogenetics
inferred← citeshttps://doi.org/10.1093/sysbio/syz060openalex-snapshot
Accurate Inference of Tree Topologies from Multiple Sequence Alignments Using Deep Learning
inferred← citeshttps://doi.org/10.1098/rspb.1998.0502openalex-snapshot
Phylogenetic information and experimental design in molecular systematics
inferred← citeshttps://doi.org/10.1098/rstb.2008.0173openalex-snapshot
The perils of plenty: what are we going to do with all these genes?
inferred← citeshttps://doi.org/10.1099/ijsem.0.001228openalex-snapshot
Corynebacterium pollutisoli sp. nov., isolated from hexachlorocyclohexane-contaminated soil
inferred← citeshttps://doi.org/10.1099/ijsem.0.005959openalex-snapshot
Brachybacterium atlanticum sp. nov., a novel marine bacterium isolated from the Atlantic Ocean
inferred← citeshttps://doi.org/10.1099/ijsem.0.007022openalex-snapshot
Aquimarina rhabdastrellae sp. nov., isolated from the marine sponge Rhabdastrella globostellata
inferred← citeshttps://doi.org/10.1099/ijsem.0.007037openalex-snapshot
Description of Spongorhabdus gen. nov., a novel genus within the Endozoicomonadaceae family, and its type species Spongorhabdus nitratireducens sp. nov., isolated from marine sponges
inferred← citeshttps://doi.org/10.1101/2020.01.07.897603openalex-snapshot
Macroevolutionary analysis of discrete character evolution using parsimony-informed likelihood
inferred← citeshttps://doi.org/10.1101/2020.01.10.902239openalex-snapshot
A novel phylogenetic analysis and machine learning predict pathogenicity of human mtDNA variants
inferred← citeshttps://doi.org/10.1101/2021.12.24.474129openalex-snapshot
New Insights into Molecular Basis Identification of Three Novel Strains of the Bacillus Subtilis Group Produce Cry Proteins Isolated from Soil Samples in Adana, Turkey
inferred← citeshttps://doi.org/10.1101/2022.04.15.488469openalex-snapshot
Structural Characterization of L-Galactose Dehydrogenase: A Key Enzyme for Vitamin C Biosynthesis
inferred← citeshttps://doi.org/10.1109/bibm49941.2020.9313237openalex-snapshot
Comparing phylogeny by compression to phylogeny by NJp and Bayesian Inference
inferred← citeshttps://doi.org/10.1109/smc.2018.00576openalex-snapshot
DE MERVLs are Enriched Around Two-Cell-Specific Genes During Zygotic Genome Activation in Mouse
inferred← citeshttps://doi.org/10.1109/tcbb.2008.107openalex-snapshot
Shrinkage Effect in Ancestral Maximum Likelihood
inferred← citeshttps://doi.org/10.1109/tcbb.2008.13openalex-snapshot
Approximate Maximum Parsimony and Ancestral Maximum Likelihood
inferred← citeshttps://doi.org/10.1109/tcbb.2020.2990867openalex-snapshot
Using Constrained-INC for Large-Scale Gene Tree and Species Tree Estimation
inferred← citeshttps://doi.org/10.1111/cla.12018openalex-snapshot
Efficacy or convenience? M odel‐based approaches to phylogeny estimation using morphological data
inferred← citeshttps://doi.org/10.1111/cla.12205openalex-snapshot
Weighted parsimony outperforms other methods of phylogenetic inference under models appropriate for morphology
inferred← citeshttps://doi.org/10.1111/cla.12216openalex-snapshot
Statistical consistency and phylogenetic inference: a brief review
inferred← citeshttps://doi.org/10.1111/cla.12380openalex-snapshot
Likelihood approximations of implied weights parsimony can be selected over the Mk model by the Akaike information criterion
inferred← citeshttps://doi.org/10.1111/ecog.05427openalex-snapshot
Diversity and phylogenetic community structure across elevation during climate change in a family of hyperdiverse neotropical beetles (Staphylinidae)
inferred← citeshttps://doi.org/10.1111/j.0006-341x.1999.00001.xopenalex-snapshot
Bayesian Phylogenetic Inference via Markov Chain Monte Carlo Methods
inferred← citeshttps://doi.org/10.1111/j.0300-3256.2004.00160.xopenalex-snapshot
The measurement of test severity, significance tests for resolution, and a unified philosophy of phylogenetic inference
inferred← citeshttps://doi.org/10.1111/j.1095-8312.1994.tb00962.xopenalex-snapshot
Rooting molecular trees: problems and strategies
inferred← citeshttps://doi.org/10.1111/j.1096-0031.1997.tb00322.xopenalex-snapshot
Probabilism and Phylogenetic Inference
inferred← citeshttps://doi.org/10.1111/j.1096-0031.1998.tb00334.xopenalex-snapshot
Success of Parsimony in the Four-Taxon Case: Long-Branch Repulsion by Likelihood in the Farris Zone
inferred← citeshttps://doi.org/10.1111/j.1096-0031.1999.tb00391.xopenalex-snapshot
Long-Branch Abstractions
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2003.tb00297.xopenalex-snapshot
Parsimony, likelihood, and simplicity
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2003.tb00311.xopenalex-snapshot
Data exploration in phylogenetic inference: scientific, heuristic, or neither
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00096.xopenalex-snapshot
Dynamic homology and the likelihood criterion
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2006.00100.xopenalex-snapshot
From conviction to anti‐superfluity: old and new justifications of parsimony in phylogenetic inference
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00231.xopenalex-snapshot
Clade support measures and their adequacy
inferred← citeshttps://doi.org/10.1111/j.1463-6395.2009.00420.xopenalex-snapshot
A new dimension in combining data? The use of morphology and phylogenomic data in metazoan systematics
inferred← citeshttps://doi.org/10.1111/j.1463-6409.1997.tb00423.xopenalex-snapshot
Inferring evolutionary processes from phylogenies
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2006.00277.xopenalex-snapshot
A falsificationist perspective on the usage of process frequencies in phylogenetics
inferred← citeshttps://doi.org/10.1111/j.1469-185x.1997.tb00009.xopenalex-snapshot
CONVERGENT EVOLUTION IN INVERTEBRATES
inferred← citeshttps://doi.org/10.1111/j.1558-5646.1992.tb01128.xopenalex-snapshot
BIOGEOGRAPHY OF NEW WORLD TAIGA-DWELLING MICROTUS (MAMMALIA: ARVICOLIDAE): A HYPOTHESIS TEST THAT ACCOUNTS FOR PHYLOGENETIC UNCERTAINTY
inferred← citeshttps://doi.org/10.1111/j.1558-5646.1993.tb01213.xopenalex-snapshot
REVERSIBILITY IN EVOLUTION: A MAXIMUM LIKELIHOOD APPROACH TO CHARACTER GAIN/LOSS BIAS IN PHYLOGENIES
inferred← citeshttps://doi.org/10.1111/j.1744-7429.2011.00774.xopenalex-snapshot
The Evolution of Group Stability and Roost Lifespan: Perspectives from Tent‐Roosting Bats
inferred← citeshttps://doi.org/10.1111/jeb.13344openalex-snapshot
Comparative evaluation of maximum parsimony and Bayesian phylogenetic reconstruction using empirical morphological data
inferred← citeshttps://doi.org/10.1126/science.8171318openalex-snapshot
Application and Accuracy of Molecular Phylogenies
inferred← citeshttps://doi.org/10.1128/9781555817688.ch4openalex-snapshot
Analysis of Similarity and Relatedness in Molecular Epidemiology
inferred← citeshttps://doi.org/10.1128/microbiolspec.ame-0006-2018openalex-snapshot
Phylogenetic Concepts and Tools Applied to Epidemiologic Investigations of Infectious Diseases
inferred← citeshttps://doi.org/10.1142/s0219720004000557openalex-snapshot
ANCESTRAL MAXIMUM LIKELIHOOD OF EVOLUTIONARY TREES IS HARD
inferred← citeshttps://doi.org/10.1145/332306.332353openalex-snapshot
Multiple maxima of likelihood in phylogenetic trees
inferred← citeshttps://doi.org/10.1146/annurev.ecolsys.28.1.437openalex-snapshot
Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
inferred← citeshttps://doi.org/10.11606/d.76.2023.tde-30032023-113047openalex-snapshot
Caracterização estrutural e funcional de três enzimas com potencial uso biotecnológico da rota biossintética D-manose/L-galactose do ácido L-ascórbico de >i /i< \"camu-camu\"
inferred← citeshttps://doi.org/10.1214/lnms/1215455551openalex-snapshot
Markov chain Monte Carlo for the Bayesian analysis of evolutionary trees from aligned molecular sequences
inferred← citeshttps://doi.org/10.13140/rg.2.1.3002.2802openalex-snapshot
Models and Estimation for Phylogenetic Trees
inferred← citeshttps://doi.org/10.1371/journal.pone.0116084openalex-snapshot
Anhydrobiosis and Freezing-Tolerance: Adaptations That Facilitate the Establishment of Panagrolaimus Nematodes in Polar Habitats
inferred← citeshttps://doi.org/10.1371/journal.pone.0279597openalex-snapshot
Roadmap to the study of gene and protein phylogeny and evolution—A practical guide
inferred← citeshttps://doi.org/10.1666/0094-8373(1998)024[0254:glaatt]2.3.co;2openalex-snapshot
Ghost lineages and “mammalness”: assessing the temporal pattern of character acquisition in the Synapsida
inferred← citeshttps://doi.org/10.17221/6131-cjgpbopenalex-snapshot
Inferring genetic relationship among haplomes in Triticeae: The utility of the 5S DNA units with examples
inferred← citeshttps://doi.org/10.2202/1544-6115.1399openalex-snapshot
Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments
inferred← citeshttps://doi.org/10.22201/ib.20078706e.2007.002.422openalex-snapshot
Análisis Filogenéticos Cuantitativos en el siglo XXI
inferred← citeshttps://doi.org/10.2307/1223585openalex-snapshot
Phylogenetic reconstruction, a critique
inferred← citeshttps://doi.org/10.2307/1447286openalex-snapshot
Mitochondrial DNA Evolution of Tetraploids in the Genus Neobatrachus (Anura: Myobatrachidae)
inferred← citeshttps://doi.org/10.2478/s11658-010-0010-8openalex-snapshot
Molecular systematics: A synthesis of the common methods and the state of knowledge
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