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Diversity and functional landscapes in the microbiota of animals in the wild
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Host age, social group, and habitat type influence the gut microbiota of wild ring‐tailed lemurs (Lemur catta)
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Metagenomic mining of glycoside hydrolases from the hindgut bacterial symbionts of a termite (Trinervitermes trinervoides) and the characterization of a multimodular β‐1,4‐xylanase (GH11)
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Discovery of Antimicrobial Lipodepsipeptides Produced by a Serratia sp. within Mosquito Microbiomes
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Tail regeneration in Lepidosauria as an exception to the generalized lack of organ regeneration in amniotes
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The Fibrobacteres: an Important Phylum of Cellulose-Degrading Bacteria
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Gut bacteria of animals/pests living in polluted environments are a potential source of antibacterials
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Biosensors for pathogen surveillance
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Mercury bioaccumulation and trophic transfer in the terrestrial food web of a montane forest
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Conservation metagenomics: a new branch of conservation biology
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Personalized Nutrition by Prediction of Glycemic Responses
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Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
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Integrated metagenomic and metatranscriptomic profiling reveals differentially expressed resistomes in human, chicken, and pig gut microbiomes
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Microbial diversity associated with tetrodotoxin production in marine organisms
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Evidence of selective pressure in whale fall microbiome proteins and its potential application to industry
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The intestinal microbiome of the pig
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Marine Mammal Microbiota Yields Novel Antibiotic with Potent Activity Against Clostridium difficile
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Habitat degradation impacts black howler monkey ( Alouatta pigra ) gastrointestinal microbiomes
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Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite
inferredcites →https://doi.org/10.1038/nature08821openalex-snapshot
A human gut microbial gene catalogue established by metagenomic sequencing
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Artificial sweeteners induce glucose intolerance by altering the gut microbiota
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The microbiome of New World vultures
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Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores
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Fast gapped-read alignment with Bowtie 2
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Fast and sensitive protein alignment using DIAMOND
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Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
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The microbiome and resistome of chimpanzees, gorillas, and humans across host lifestyle and geography
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The antimicrobial potential of Streptomyces from insect microbiomes
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Host diet and evolutionary history explain different aspects of gut microbiome diversity among vertebrate clades
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DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats
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Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
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A new genomic blueprint of the human gut microbiota
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inferredcites →https://doi.org/10.1073/pnas.0806191105openalex-snapshot
Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
inferredcites →https://doi.org/10.1073/pnas.0905252106openalex-snapshot
Hypersensitivity to contact inhibition provides a clue to cancer resistance of naked mole-rat
inferredcites →https://doi.org/10.1073/pnas.1017956108openalex-snapshot
Evidence of cellulose metabolism by the giant panda gut microbiome
inferredcites →https://doi.org/10.1073/pnas.1503283112openalex-snapshot
DNA metabarcoding illuminates dietary niche partitioning by African large herbivores
inferredcites →https://doi.org/10.1073/pnas.95.15.8922openalex-snapshot
Pathogenic adaptation of Escherichia coli by natural variation of the FimH adhesin
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Prokka: rapid prokaryotic genome annotation
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MetaQUAST: evaluation of metagenome assemblies
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FastSpar: rapid and scalable correlation estimation for compositional data
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MetaGeneAnnotator: Detecting Species-Specific Patterns of Ribosomal Binding Site for Precise Gene Prediction in Anonymous Prokaryotic and Phage Genomes
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MetaVelvet-SL: an extension of the Velvet assembler to a de novo metagenomic assembler utilizing supervised learning
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Growing up in a Bubble: Using Germ-Free Animals to Assess the Influence of the Gut Microbiota on Brain and Behavior
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KEGG: Kyoto Encyclopedia of Genes and Genomes
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KEGG: Kyoto Encyclopedia of Genes and Genomes
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eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
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Interactive Tree Of Life (iTOL) v4: recent updates and new developments
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Comparative Analysis of Principal Components Can be Misleading
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Conservation biology needs a microbial renaissance: a call for the consideration of host-associated microbiota in wildlife management practices
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SIZE-CORRECTION AND PRINCIPAL COMPONENTS FOR INTERSPECIFIC COMPARATIVE STUDIES
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inferredcites →https://doi.org/10.1111/mec.13730openalex-snapshot
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inferredcites →https://doi.org/10.1111/mec.14473openalex-snapshot
Rates of gut microbiome divergence in mammals
inferredcites →https://doi.org/10.1111/mec.14734openalex-snapshot
Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?
inferredcites →https://doi.org/10.1111/mec.14779openalex-snapshot
How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
inferredcites →https://doi.org/10.1126/sciadv.1500997openalex-snapshot
Social behavior shapes the chimpanzee pan-microbiome
inferredcites →https://doi.org/10.1126/science.1155725openalex-snapshot
Evolution of Mammals and Their Gut Microbes
inferredcites →https://doi.org/10.1126/science.1174269openalex-snapshot
Bioluminescence in the Ocean: Origins of Biological, Chemical, and Ecological Diversity
inferredcites →https://doi.org/10.1126/science.1198719openalex-snapshot
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
inferredcites →https://doi.org/10.1126/science.1227412openalex-snapshot
Animal Behavior and the Microbiome
inferredcites →https://doi.org/10.1126/science.aao5167openalex-snapshot
Multiplexed gene synthesis in emulsions for exploring protein functional landscapes
inferredcites →https://doi.org/10.1126/science.aat7164openalex-snapshot
Transmission modes of the mammalian gut microbiota
inferredcites →https://doi.org/10.1126/science.abb5352openalex-snapshot
Diversity and functional landscapes in the microbiota of animals in the wild
inferredcites →https://doi.org/10.1128/9781555817626openalex-snapshot
Viruses and the Evolution of Life
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inferredcites →https://doi.org/10.1128/mbio.02901-19openalex-snapshot
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats
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Identification of Gastrointestinal Microbiota in Hawaiian Green Turtles ( Chelonia mydas )
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Mash: fast genome and metagenome distance estimation using MinHash
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EvolQG - An R package for evolutionary quantitative genetics
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inferredcites →https://doi.org/10.1371/journal.pone.0191335openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0206970openalex-snapshot
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inferredcites →https://doi.org/10.1371/journal.pone.0208727openalex-snapshot
Feeding responses of the golden jackal after reduction of anthropogenic food subsidies
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An atlas of robust microbiome associations with phenotypic traits based on large-scale cohorts from two continents
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Clostridial toxins: potent poisons, potent medicines
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Gut Microbiota of Wild and Captive Alpine Musk Deer (Moschus chrysogaster)
inferredcites →https://doi.org/10.3389/fmicb.2020.00032openalex-snapshot
Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency
inferredcites →https://doi.org/10.3389/fnint.2018.00021openalex-snapshot
Reciprocal Interactions Between Gut Microbiota and Host Social Behavior
inferredcites →https://doi.org/10.3390/genes10100827openalex-snapshot
Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)
inferredcites →https://doi.org/10.3390/md10061192openalex-snapshot
Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
inferredcites →https://doi.org/10.3390/v11090803openalex-snapshot
Faecal Virome Analysis of Wild Animals from Brazil
inferredcites →https://doi.org/10.3897/rio.5.e36178openalex-snapshot
A fast alignment-free bioinformatics procedure to infer accurate distance-based phylogenetic trees from genome assemblies
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Phylogenetic Principal Components Analysis and Geometric Morphometrics
inferredcites →https://doi.org/10.5187/jast.2020.62.2.239openalex-snapshot
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inferredcites →https://doi.org/10.7554/elife.05224openalex-snapshot
Social networks predict gut microbiome composition in wild baboons
inferredcites →https://doi.org/10.7554/elife.13442openalex-snapshot
Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior
inferredcites →https://doi.org/10.7717/peerj.1165openalex-snapshot
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Gut Microbiome Response To Host Metabolic Type Tradeoff During the Reproductive Life-History Of Megalobrama Terminalis
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inferred← citeshttps://doi.org/10.1016/j.celrep.2021.110203openalex-snapshot
Seasonal shift of the gut microbiome synchronizes host peripheral circadian rhythm for physiological adaptation to a low-fat diet in the giant panda
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.111410openalex-snapshot
Even allocation of benefits stabilizes microbial community engaged in metabolic division of labor
inferred← citeshttps://doi.org/10.1016/j.celrep.2026.116930openalex-snapshot
Large-scale metagenomic analysis reveals host genetics shapes microbiomes in wild freshwater fish gut and skin
inferred← citeshttps://doi.org/10.1016/j.cels.2022.12.007openalex-snapshot
Pitfalls of genotyping microbial communities with rapidly growing genome collections
inferred← citeshttps://doi.org/10.1016/j.cels.2025.101196openalex-snapshot
A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites
inferred← citeshttps://doi.org/10.1016/j.coisb.2021.05.007openalex-snapshot
Advances in constraint-based modelling of microbial communities
inferred← citeshttps://doi.org/10.1016/j.cotox.2023.100428openalex-snapshot
The microbiomes of wildlife and chemical pollution: Status, knowledge gaps and challenges
inferred← citeshttps://doi.org/10.1016/j.ecoinf.2025.103305openalex-snapshot
Integrating isotopic niche metrics and gut microbiota assembly reveals coexistence mechanisms in subtropical riverine fish
inferred← citeshttps://doi.org/10.1016/j.ecz.2025.100040openalex-snapshot
Exploring and utilizing soil Microbiota: From dark to light
inferred← citeshttps://doi.org/10.1016/j.envint.2023.108374openalex-snapshot
Dissemination of antibiotic resistance genes through soil-plant-earthworm continuum in the food production environment
inferred← citeshttps://doi.org/10.1016/j.envpol.2026.128041openalex-snapshot
The health threat of wild animals by Rank I ARGs from habitat soils: Metagenomic and metabolomic evidence
inferred← citeshttps://doi.org/10.1016/j.fishres.2025.107594openalex-snapshot
Localized gut tissue and digesta bacterial communities of five pelagic fish species from the Atlantic Ocean: Insights from 16S rRNA gene diversity
inferred← citeshttps://doi.org/10.1016/j.gpb.2022.02.007openalex-snapshot
Microbial Dark Matter: From Discovery to Applications
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e22351openalex-snapshot
Bat-associated microbes: Opportunities and perils, an overview
inferred← citeshttps://doi.org/10.1016/j.isci.2025.113000openalex-snapshot
Updating conservation metagenomics on the gut microbiome of threatened mammals
inferred← citeshttps://doi.org/10.1016/j.jare.2025.12.017openalex-snapshot
Phyllosphere microbiomes in grassland plants harbor a vast reservoir of novel antimicrobial peptides and biosynthetic diversity
inferred← citeshttps://doi.org/10.1016/j.micres.2022.127023openalex-snapshot
Recovering metagenome-assembled genomes from shotgun metagenomic sequencing data: Methods, applications, challenges, and opportunities
inferred← citeshttps://doi.org/10.1016/j.pecon.2025.10.003openalex-snapshot
Trait profiles and taxonomy predict zoonotic microparasite occurrences on potential hosts and geographic distribution
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.156178openalex-snapshot
Global landscape of gut microbiome diversity and antibiotic resistomes across vertebrates
inferred← citeshttps://doi.org/10.1016/j.tim.2025.12.017openalex-snapshot
Game of microbes: a wildling’s guide
inferred← citeshttps://doi.org/10.1016/j.wateco.2025.100004openalex-snapshot
Adjustable microbial cross-feedings adapt to landforms in the Yangtze River
inferred← citeshttps://doi.org/10.1021/acs.jafc.1c04291openalex-snapshot
Different Types and Functional Effects of Probiotics on Human Health through Regulating Glucose Homeostasis
inferred← citeshttps://doi.org/10.1038/s41467-022-32991-wopenalex-snapshot
Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes
inferred← citeshttps://doi.org/10.1038/s41467-025-57435-zopenalex-snapshot
Recent genetic drift in the co-diversified gut bacterial symbionts of laboratory mice
inferred← citeshttps://doi.org/10.1038/s41467-025-64115-5openalex-snapshot
Evolution of gut microbiota across honeybee species revealed by comparative metagenomics
inferred← citeshttps://doi.org/10.1038/s41522-023-00388-2openalex-snapshot
Gut microbiome responds compositionally and functionally to the seasonal diet variations in wild gibbons
inferred← citeshttps://doi.org/10.1038/s41522-025-00665-2openalex-snapshot
Newly identified species from the dog dental plaque microbiome highlight little overlap with humans
inferred← citeshttps://doi.org/10.1038/s41522-025-00888-3openalex-snapshot
Gut microbiome profiling of a migratory Anser serrirostris population reveals two groups with distinct pathogen and ARG contents
inferred← citeshttps://doi.org/10.1038/s41551-026-01630-wopenalex-snapshot
Uncovering evolutionarily remote and highly potent antimicrobial peptides with protein language models
inferred← citeshttps://doi.org/10.1038/s41559-026-03073-7openalex-snapshot
Isolation by distance promotes gut microbial strain divergence in wild mouse populations
inferred← citeshttps://doi.org/10.1038/s41564-022-01125-9openalex-snapshot
Microbiomes of microscopic marine invertebrates do not reveal signatures of phylosymbiosis
inferred← citeshttps://doi.org/10.1038/s41564-025-02119-zopenalex-snapshot
Genome-resolved metagenomics reveals microbiome diversity across 48 tick species
inferred← citeshttps://doi.org/10.1038/s41576-024-00746-6openalex-snapshot
Sequencing-based analysis of microbiomes
inferred← citeshttps://doi.org/10.1038/s41577-024-01108-3openalex-snapshot
Integrating natural commensals and pathogens into preclinical mouse models
inferred← citeshttps://doi.org/10.1038/s41579-025-01166-xopenalex-snapshot
Human microbiome acquisition and transmission
inferred← citeshttps://doi.org/10.1038/s41587-023-01688-wopenalex-snapshot
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
inferred← citeshttps://doi.org/10.1038/s41597-022-01444-wopenalex-snapshot
A database of animal metagenomes
inferred← citeshttps://doi.org/10.1038/s41598-022-08797-7openalex-snapshot
The gut microbiome of exudivorous marmosets in the wild and captivity
inferred← citeshttps://doi.org/10.1038/s41598-023-33163-6openalex-snapshot
Alteration of gut microbiota in wild-borne long-tailed macaques after 1-year being housed in hygienic captivity
inferred← citeshttps://doi.org/10.1038/s41598-023-39184-5openalex-snapshot
Emergent community architecture despite distinct diversity in the global whale shark (Rhincodon typus) epidermal microbiome
inferred← citeshttps://doi.org/10.1038/s41598-023-42059-4openalex-snapshot
Bifidobacteria define gut microbiome profiles of golden lion tamarin (Leontopithecus rosalia) and marmoset (Callithrix sp.) metagenomic shotgun pools
inferred← citeshttps://doi.org/10.1038/s41598-024-64010-xopenalex-snapshot
Maintain the light, long-term seasonal monitoring of luminous capabilities in the brittle star Amphiura filiformis
inferred← citeshttps://doi.org/10.1038/s41598-024-64727-9openalex-snapshot
Metagenomic and culture-dependent analysis of Rhinopithecius bieti gut microbiota and characterization of a novel genus of Sphingobacteriaceae
inferred← citeshttps://doi.org/10.1038/s41598-025-14933-wopenalex-snapshot
Bacterial indicators of environmental stress in the gut microbiome of free-ranging European roe deer inhabiting agricultural landscapes
inferred← citeshttps://doi.org/10.1038/s43705-023-00221-zopenalex-snapshot
Impact of microbial genome completeness on metagenomic functional inference
inferred← citeshttps://doi.org/10.1080/19490976.2022.2078619openalex-snapshot
Revisiting the role of Akkermansia muciniphila as a therapeutic bacterium
inferred← citeshttps://doi.org/10.1080/21505594.2026.2728506openalex-snapshot
Farming reshapes the gut resistome, virulome, and mobilome of Cervidae
inferred← citeshttps://doi.org/10.1093/bioinformatics/btac319openalex-snapshot
Exodus: sequencing-based pipeline for quantification of pooled variants
inferred← citeshttps://doi.org/10.1093/ismeco/ycaf008openalex-snapshot
Metagenomic analyses of gut microbiome composition and function with age in a wild bird; little change, except increased transposase gene abundance
inferred← citeshttps://doi.org/10.1093/ismeco/ycag106openalex-snapshot
Beyond the core microbiome: endemic bacteria drive functional and microdiversity differences across salamander populations
inferred← citeshttps://doi.org/10.1093/ismejo/wrad037openalex-snapshot
Characterizing core microbiota and regulatory functions of the pig gut microbiome
inferred← citeshttps://doi.org/10.1093/ismejo/wrae201openalex-snapshot
Comprehensive profile of the companion animal gut microbiome integrating reference-based and reference-free methods
inferred← citeshttps://doi.org/10.1093/ismejo/wrag044openalex-snapshot
Microbially derived essential amino acids compensate for dietary deficiencies in an ecologically relevant mammalian host
inferred← citeshttps://doi.org/10.1093/ismejo/wrag122openalex-snapshot
Standardized and batch effect–independent technologies enable global collaboration in microbiome research
inferred← citeshttps://doi.org/10.1093/jeb/voaf063openalex-snapshot
Metagenomic spaces: a framework to study the effect of microbiome variation on animal ecology and evolution
inferred← citeshttps://doi.org/10.1093/jmammal/gyae143openalex-snapshot
Subtle diurnal microbial rhythms in a large mammalian carnivore
inferred← citeshttps://doi.org/10.1093/nar/gkae1004openalex-snapshot
The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities
inferred← citeshttps://doi.org/10.1093/nar/gkaf1115openalex-snapshot
gcMeta 2025: a global repository of metagenome-assembled genomes enabling cross-ecosystem microbial discovery and function research
inferred← citeshttps://doi.org/10.1093/nsr/nwac174openalex-snapshot
Hologenomic insights into mammalian adaptations to myrmecophagy
inferred← citeshttps://doi.org/10.1097/cm9.0000000000003182openalex-snapshot
Enhancing antimicrobial resistance detection with MetaGeneMiner: Targeted gene extraction from metagenomes
inferred← citeshttps://doi.org/10.1098/rsbl.2026.0327openalex-snapshot
Discovery and characterization of outer membrane vesicles produced by the bee gut microbiota
inferred← citeshttps://doi.org/10.1099/acmi.0.000910.v3openalex-snapshot
Faecal metagenomes of great tits and blue tits provide insights into host, diet, pathogens and microbial biodiversity
inferred← citeshttps://doi.org/10.1099/mgen.0.000802openalex-snapshot
Novel canine high-quality metagenome-assembled genomes, prophages and host-associated plasmids provided by long-read metagenomics together with Hi-C proximity ligation
inferred← citeshttps://doi.org/10.1099/mgen.0.001601openalex-snapshot
A molecular inventory of the faecal microbiomes of 23 marsupial species
inferred← citeshttps://doi.org/10.1101/2022.05.16.491731openalex-snapshot
A Unified Catalog of 19,251 Non-human Reference Species Genomes Provides New Insights into the Mammalian Gut Microbiomes
inferred← citeshttps://doi.org/10.1101/2022.06.06.494923openalex-snapshot
Ecology, not host phylogeny, shapes the oral microbiome in closely related species of gorillas
inferred← citeshttps://doi.org/10.1101/2022.08.02.502164openalex-snapshot
Taxonomic, genomic, and functional variation in the gut microbiomes of wild spotted hyenas across two decades of study
inferred← citeshttps://doi.org/10.1101/2022.08.22.504593openalex-snapshot
Extending and improving metagenomic taxonomic profiling with uncharacterized species with MetaPhlAn 4
inferred← citeshttps://doi.org/10.1101/2023.11.16.567485openalex-snapshot
Human microbiota is a reservoir of SARS-CoV-2 advantageous mutations
inferred← citeshttps://doi.org/10.1101/2024.03.23.586382openalex-snapshot
Closest relatives of poxviruses replicate in the digestive system of humans and animals worldwide
inferred← citeshttps://doi.org/10.1101/2024.03.25.586562openalex-snapshot
Widespread Horizontal Gene Transfer Among Animal Viruses
inferred← citeshttps://doi.org/10.1101/2024.08.14.607958openalex-snapshot
Recent genetic drift in the co-diversified gut bacterial symbionts of laboratory mice
inferred← citeshttps://doi.org/10.1101/2024.11.08.622677openalex-snapshot
Evaluating metagenomic analyses for undercharacterized environments: what’s needed to light up the microbial dark matter?
inferred← citeshttps://doi.org/10.1101/2024.12.03.626655openalex-snapshot
Dietary intervention in captive-bred hares fails to enrich gut microbiomes with wild-like functions
inferred← citeshttps://doi.org/10.1101/2025.02.12.637985openalex-snapshot
Synthetic community Hi-C benchmarking provides a baseline for virus-host inferences
inferred← citeshttps://doi.org/10.1101/2025.04.15.649043openalex-snapshot
A Method for Preparing Morphologically Preserved Wildlife Fecal Specimens for Long-Term Ecological Studies
inferred← citeshttps://doi.org/10.1101/2025.07.03.662964openalex-snapshot
Characterizing Bacterial and Archaeal Microbiomes of Singapore’s Urban Long-Tailed Macaques
inferred← citeshttps://doi.org/10.1101/2025.09.15.676373openalex-snapshot
Isolation by distance promotes strain diversification in the wild mouse gut microbiota
inferred← citeshttps://doi.org/10.1101/2025.09.30.679663openalex-snapshot
Micro-scale spatial metagenomics: revealing high-resolution spatial biogeography of gut microbiomes
inferred← citeshttps://doi.org/10.1111/1365-2435.14650openalex-snapshot
Probing the functional significance of wild animal microbiomes using omics data
inferred← citeshttps://doi.org/10.1111/1749-4877.12830openalex-snapshot
Multi‐omics reveal the gut microbiota‐mediated severe foraging environment adaption of small wild ruminants in the Three‐River‐Source National Park, China
inferred← citeshttps://doi.org/10.1111/2041-210x.14456openalex-snapshot
Hologenomic data generation and analysis in wild vertebrates
inferred← citeshttps://doi.org/10.1111/brv.13161openalex-snapshot
Comparative gut microbiome research through the lens of ecology: theoretical considerations and best practices
inferred← citeshttps://doi.org/10.1111/jav.03347openalex-snapshot
Characterizing bacterial communities of wild birds: Insights from three southern African hornbill species
inferred← citeshttps://doi.org/10.1111/jmp.70008openalex-snapshot
Profiling the Gut Microbiome of Hylobatidae and Cercopithecinae: Insights Into the Health of Primates in Captivity
inferred← citeshttps://doi.org/10.1111/mec.16743openalex-snapshot
Microbiomes associated with avian malaria survival differ between susceptible Hawaiian honeycreepers and sympatric malaria‐resistant introduced birds
inferred← citeshttps://doi.org/10.1111/mec.16862openalex-snapshot
Transmission mode and dispersal traits correlate with host specificity in mammalian gut microbes
inferred← citeshttps://doi.org/10.1111/oik.09374openalex-snapshot
How to outrun your parasites (or mutualists): symbiont transmission mode is key
inferred← citeshttps://doi.org/10.1126/science.abg9095openalex-snapshot
The gut microbiomes of 180 species
inferred← citeshttps://doi.org/10.1126/science.adj9223openalex-snapshot
Cryptic diversity of cellulose-degrading gut bacteria in industrialized humans
inferred← citeshttps://doi.org/10.1128/aem.00499-22openalex-snapshot
Gastrointestinal Biogeography of Luminal Microbiota and Short-Chain Fatty Acids in Sika Deer (Cervus nippon)
inferred← citeshttps://doi.org/10.1128/mbio.03187-23openalex-snapshot
The human microbiota is a beneficial reservoir for SARS-CoV-2 mutations
inferred← citeshttps://doi.org/10.1128/mbio.03342-23openalex-snapshot
From wolves to humans: oral microbiome resistance to transfer across mammalian hosts
inferred← citeshttps://doi.org/10.1128/mbio.03538-22openalex-snapshot
Deep Divergence and Genomic Diversification of Gut Symbionts of Neotropical Stingless Bees
inferred← citeshttps://doi.org/10.1128/msystems.00367-25openalex-snapshot
Cultivation and sequencing of microbiota members unveil the functional potential of yak gut microbiota
inferred← citeshttps://doi.org/10.1128/msystems.00452-24openalex-snapshot
Response of the gut microbiome and metabolome to dietary fiber in healthy dogs
inferred← citeshttps://doi.org/10.1128/msystems.00965-22openalex-snapshot
Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of Wild Spotted Hyenas Across 2 Decades of Study
inferred← citeshttps://doi.org/10.1128/spectrum.01396-22openalex-snapshot
Colicins of Escherichia coli Lead to Resistance against the Diarrhea-Causing Pathogen Enterotoxigenic E. coli in Pigs
inferred← citeshttps://doi.org/10.1128/spectrum.02388-25openalex-snapshot
Gut microbiome plasticity explains the altitudinal distribution pattern and adaptability in a small mammal species ( Apodemus draco )
inferred← citeshttps://doi.org/10.1128/spectrum.02805-23openalex-snapshot
Fecal and skin microbiota of two rescued Mediterranean monk seal pups during rehabilitation
inferred← citeshttps://doi.org/10.1128/spectrum.03664-25openalex-snapshot
Microbiome varies by body site in the yellow mud turtle, Kinosternon flavescens, from the Chihuahuan Desert
inferred← citeshttps://doi.org/10.1128/spectrum.03691-25openalex-snapshot
Grass supplementation to a pellet-based diet fails to enrich gut microbiomes with wild-like functions in captive-bred hares
inferred← citeshttps://doi.org/10.1128/spectrum.03819-23openalex-snapshot
Pseudomonas -associated bacteria play a key role in obtaining nutrition from bamboo for the giant panda ( Ailuropoda melanoleuca )
inferred← citeshttps://doi.org/10.1146/annurev-animal-020420-032054openalex-snapshot
Host Genetic Determinants of the Microbiome Across Animals: From Caenorhabditis elegans to Cattle
inferred← citeshttps://doi.org/10.1146/annurev-micro-111121-085333openalex-snapshot
Metabolic Enabling and Detoxification by Mammalian Gut Microbes
inferred← citeshttps://doi.org/10.11606/d.95.2023.tde-07022024-204134openalex-snapshot
Análise genômica de isolados bacterianos de cobaias (Cavia porcellus) e preguiças-de-garganta-marrom (Bradypus variegatus)
inferred← citeshttps://doi.org/10.1177/00494755261493670openalex-snapshot
Temporal trends in envenomation by venomous animals: A global burden of disease analysis
inferred← citeshttps://doi.org/10.1186/s12866-023-02998-4openalex-snapshot
Effects of plant-derived protein and rapeseed oil on growth performance and gut microbiomes in rainbow trout
inferred← citeshttps://doi.org/10.1186/s12866-026-04949-1openalex-snapshot
Ornithinibacillus liuyingii sp. nov.: a novel multidrug-resistant and potentially pathogenic bacterium isolated from Apodemus chevrieri lung tissue
inferred← citeshttps://doi.org/10.1186/s40168-023-01581-3openalex-snapshot
Mechanism of inulin in colic and gut microbiota of captive Asian elephant
inferred← citeshttps://doi.org/10.1186/s40168-023-01657-0openalex-snapshot
PandaGUT provides new insights into bacterial diversity, function, and resistome landscapes with implications for conservation
inferred← citeshttps://doi.org/10.1186/s40168-024-01806-zopenalex-snapshot
Compendium of 5810 genomes of sheep and goat gut microbiomes provides new insights into the glycan and mucin utilization
inferred← citeshttps://doi.org/10.1186/s40168-024-01809-wopenalex-snapshot
Exploring the landscape of symbiotic diversity and distribution in unicellular ciliated protists
inferred← citeshttps://doi.org/10.1186/s40168-024-01863-4openalex-snapshot
Trait-based study predicts glycerol/diol dehydratases as a key function of the gut microbiota of hindgut-fermenting carnivores
inferred← citeshttps://doi.org/10.1186/s40168-025-02232-5openalex-snapshot
A unified catalog of 14,062 microbial species reference genomes provides new insight into the gut microbiota in high-altitude mammals
inferred← citeshttps://doi.org/10.1186/s40657-021-00287-0openalex-snapshot
The gut microbiome and metabolome of Himalayan Griffons (Gyps himalayensis): insights into the adaptation to carrion-feeding habits in avian scavengers
inferred← citeshttps://doi.org/10.1186/s42523-021-00120-5openalex-snapshot
Characterization of oral and cloacal microbial communities of wild and rehabilitated loggerhead sea turtles (Caretta caretta)
inferred← citeshttps://doi.org/10.1186/s42523-021-00146-9openalex-snapshot
Clinical health issues, reproductive hormones, and metabolic hormones associated with gut microbiome structure in African and Asian elephants
inferred← citeshttps://doi.org/10.1186/s42523-021-00149-6openalex-snapshot
Gut microbiome composition, not alpha diversity, is associated with survival in a natural vertebrate population
inferred← citeshttps://doi.org/10.1186/s42523-026-00533-0openalex-snapshot
Comprehensive catalog of gut microbial genomes in Asian elephants: insights from shotgun metagenomics
inferred← citeshttps://doi.org/10.1371/journal.pbio.3003436openalex-snapshot
Increased urea nitrogen salvaging by a remodeled gut microbiota helps nonhibernating pikas maintain protein homeostasis during winter
inferred← citeshttps://doi.org/10.1371/journal.pbio.3003510openalex-snapshot
Benchmarking with synthetic communities provides a baseline for virus-host inferences from Hi-C proximity linking
inferred← citeshttps://doi.org/10.1371/journal.pone.0313263openalex-snapshot
Gut bacterial communities in roadkill animals: A pioneering study of two species in the Amazon region in Ecuador
inferred← citeshttps://doi.org/10.1371/journal.pone.0343260openalex-snapshot
Comparative fecal microbiome analysis of the endangered Volcano rabbit (Romerolagus diazi) reveals a microbial core in contrasting habitats of Central Mexico
inferred← citeshttps://doi.org/10.14202/vetworld.2025.1899-1910openalex-snapshot
First molecular phylogenetic and serological insights into Listeria monocytogenes infection in aborted ewes in Iraq: A cross-border comparative analysis
inferred← citeshttps://doi.org/10.1590/1678-4324-2026250762openalex-snapshot
Revealing the Intestinal Microbiota of Collared Peccaries (Pecari tajacu Linnaeus, 1758): Connections Between Wildlife and One Health
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1077771/v1openalex-snapshot
Diet, microbes, and cancer across the tree of life: a systematic review
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1081317/v1openalex-snapshot
Site-Specific Variation in Bacterial Loads of Wooden Nest Boxes in the Pre-Breeding Period
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1857423/v1openalex-snapshot
Comparison of the gut microflora of common kestrel (Falco tinnunculus) according to differences in sex, age, and physiological condition
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1955526/v1openalex-snapshot
Impact of microbial genome completeness on functional metagenomics
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1955526/v2openalex-snapshot
Impact of microbial genome completeness on functional metagenomics
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2591858/v1openalex-snapshot
The Key Role of Pseudomonas-Associated Bacteria in Obtaining Nutrition from Bamboo for the Giant Panda (Ailuropoda melanoleuca)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-850463/v1openalex-snapshot
Gut microbiome composition, not alpha diversity, is associated with survival in a natural vertebrate population
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8959905/v1openalex-snapshot
Microbiome-based tracking of diet shifts in ectotherms: a new approach to monitor effects of global changes on food webs?
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8959905/v2openalex-snapshot
Microbiome-based tracking of diet shifts in ectotherms: a new approach to monitor effects of global changes on food webs?
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8959905/v3openalex-snapshot
Microbiome-based tracking of diet shifts in ectotherms to monitor effects of global changes on food webs: a systematic map with identified challenges and prospects
inferred← citeshttps://doi.org/10.2139/ssrn.5180071openalex-snapshot
Integrating Isotopic Niche Metrics and Gut Microbiota Assembly Reveals Codiversification-Mediated Coexistence Mechanisms in Riverine Fish
inferred← citeshttps://doi.org/10.22541/au.166563041.13659231/v1openalex-snapshot
Habitat-specific variation in bacterial loads of wooden nest boxes in the pre-breeding period
inferred← citeshttps://doi.org/10.32942/x2d03gopenalex-snapshot
Bird life history traits influence the diversity of their associated microbiomes
inferred← citeshttps://doi.org/10.3389/fcvm.2022.814076openalex-snapshot
Gut Microbiome Alterations and Hepatic Metabolic Flexibility in the Gansu Zokor, Eospalax cansus: Adaptation to Hypoxic Niches
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1027188openalex-snapshot
Gut microbiome of captive wolves is more similar to domestic dogs than wild wolves indicated by metagenomics study
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1062604openalex-snapshot
Reintroduction modifies the intraspecific variations of symbiotic microbes in captive bred Chinese giant salamander
inferred← citeshttps://doi.org/10.3389/fmicb.2022.886252openalex-snapshot
The Gut Microbiome of 54 Mammalian Species
inferred← citeshttps://doi.org/10.3389/fmicb.2022.936601openalex-snapshot
Gut microbiomes of cyprinid fish exhibit host-species symbiosis along gut trait and diet
inferred← citeshttps://doi.org/10.3389/fmicb.2022.966436openalex-snapshot
Hatchery tanks induce intense reduction in microbiota diversity associated with gills and guts of two endemic species of the São Francisco River
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1238580openalex-snapshot
Insights into early evolutionary adaptations of the Akkermansia genus to the vertebrate gut
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1394463openalex-snapshot
More deterministic assembly constrains the diversity of gut microbiota in freshwater snails
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1394745openalex-snapshot
Taxonomic composition and functional potentials of gastrointestinal microbiota in 12 wild-stranded cetaceans
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1479352openalex-snapshot
Comparative analysis of the gut microbiota composition and diversity in Erinaceus amurensis from the Wandashan Mountain range area based on metagenomics
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1614319openalex-snapshot
Adaptive characteristics of the gut microbiota of the scaly-sided merganser (Mergus squamatus) in energy compensation at different developmental stages
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1753410openalex-snapshot
Elephant-derived Bacillus licheniformis modulates immune cells shedding light on cancer resistance
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1828152openalex-snapshot
Domestication shapes the gut microbial structure and metabolic function in felids: a metagenomic study of wild and domestic cats
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1898323openalex-snapshot
Metagenomic analysis of the gut microbiota in Cygnus cygnus and isolation, identification, and safety assessment of Bacillus
inferred← citeshttps://doi.org/10.3389/fnut.2023.1193848openalex-snapshot
Bioactive compounds for human and planetary health
inferred← citeshttps://doi.org/10.3389/fvets.2023.1102186openalex-snapshot
Diversity of the fecal microbiota in Chinese ponies
inferred← citeshttps://doi.org/10.3389/fvets.2024.1403932openalex-snapshot
Metagenomic comparison of gut communities between wild and captive Himalayan griffons
inferred← citeshttps://doi.org/10.3390/ani13132106openalex-snapshot
Composition, Diversity and Sex-Related Differences in Intestinal Microbiota in Captive African Penguins (Spheniscus demersus)
inferred← citeshttps://doi.org/10.3390/ani13152413openalex-snapshot
Fish Gut Microbiome Analysis Provides Insight into Differences in Physiology and Behavior of Invasive Nile Tilapia and Indigenous Fish in a Large Subtropical River in China
inferred← citeshttps://doi.org/10.3390/ani13182989openalex-snapshot
Nest Box Bacterial Loads Are Affected by Cavity Use by Secondary Hole Nesters
inferred← citeshttps://doi.org/10.3390/app11188445openalex-snapshot
The Influence of Diet and Probiotics on the Response of Solid Tumours to Immunotherapy: Present and Future Perspectives
inferred← citeshttps://doi.org/10.3390/biology14091197openalex-snapshot
Metagenomic Analysis Revealed Significant Changes in the Beef Cattle Rectum Microbiome Under Fescue Toxicosis
inferred← citeshttps://doi.org/10.3390/biology15020144openalex-snapshot
Age-Specific Composition and Predicted Function of Gut Microbiota in Plateau Pikas (Ochotona curzoniae)
inferred← citeshttps://doi.org/10.3390/fermentation9080772openalex-snapshot
Integrated Metagenomics and Network Analysis of Metabolic Functional Genes in the Microbial Community of Chinese Fermentation Pits
inferred← citeshttps://doi.org/10.3390/ijms24076491openalex-snapshot
The Landscape of Global Ocean Microbiome: From Bacterioplankton to Biofilms
inferred← citeshttps://doi.org/10.3390/ijms25137425openalex-snapshot
The Response of the Gut Physiological Function and Microbiome of a Wild Freshwater Fish (Megalobrama terminalis) to Alterations in Reproductive Behavior
inferred← citeshttps://doi.org/10.3390/metabo14090497openalex-snapshot
Functional Muffins Exert Bifidogenic Effects along with Highly Product-Specific Effects on the Human Gut Microbiota Ex Vivo
inferred← citeshttps://doi.org/10.3390/microorganisms10102081openalex-snapshot
Epidermal Microbiomes of Leopard Sharks (Triakis semifasciata) Are Consistent across Captive and Wild Environments
inferred← citeshttps://doi.org/10.3390/microorganisms11071860openalex-snapshot
Analysis of the Intestinal and Faecal Bacterial Microbiota of the Cervidae Family Using 16S Next-Generation Sequencing: A Review
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