On the public citation graph

Spatial-CUT&Tag: Spatially resolved chromatin modification profiling at the cellular level

https://doi.org/10.1126/science.abg7216
0 signed · 441 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cpbi.5openalex-snapshot
The GeneCards Suite: From Gene Data Mining to Disease Genome Sequence Analyses
inferredcites →https://doi.org/10.1016/j.cell.2014.08.009openalex-snapshot
Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
inferredcites →https://doi.org/10.1016/j.cell.2015.04.044openalex-snapshot
Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells
inferredcites →https://doi.org/10.1016/j.cell.2015.05.002openalex-snapshot
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
inferredcites →https://doi.org/10.1016/j.cell.2018.06.021openalex-snapshot
Molecular Architecture of the Mouse Nervous System
inferredcites →https://doi.org/10.1016/j.cell.2019.05.031openalex-snapshot
Comprehensive Integration of Single-Cell Data
inferredcites →https://doi.org/10.1016/j.cell.2020.09.056openalex-snapshot
Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
inferredcites →https://doi.org/10.1016/j.cell.2020.10.026openalex-snapshot
High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue
inferredcites →https://doi.org/10.1016/j.neuron.2009.08.021openalex-snapshot
Polycomb Limits the Neurogenic Competence of Neural Precursor Cells to Promote Astrogenic Fate Transition
inferredcites →https://doi.org/10.1038/nature03837openalex-snapshot
Neural crest origins of the neck and shoulder
inferredcites →https://doi.org/10.1038/nature05453openalex-snapshot
Genome-wide atlas of gene expression in the adult mouse brain
inferredcites →https://doi.org/10.1038/nbt.3383openalex-snapshot
Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state
inferredcites →https://doi.org/10.1038/nbt.4038openalex-snapshot
Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
inferredcites →https://doi.org/10.1038/nbt.4096openalex-snapshot
Integrating single-cell transcriptomic data across different conditions, technologies, and species
inferredcites →https://doi.org/10.1038/nmeth.4401openalex-snapshot
chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
inferredcites →https://doi.org/10.1038/nrg3980openalex-snapshot
Single-cell epigenomics: techniques and emerging applications
inferredcites →https://doi.org/10.1038/s41467-018-05887-xopenalex-snapshot
High-throughput chromatin accessibility profiling at single-cell resolution
inferredcites →https://doi.org/10.1038/s41467-019-09982-5openalex-snapshot
CUT&Tag for efficient epigenomic profiling of small samples and single cells
inferredcites →https://doi.org/10.1038/s41576-019-0129-zopenalex-snapshot
Spatial transcriptomics coming of age
inferredcites →https://doi.org/10.1038/s41576-020-00300-0openalex-snapshot
The epigenetic basis of cellular heterogeneity
inferredcites →https://doi.org/10.1038/s41586-019-0969-xopenalex-snapshot
The single-cell transcriptional landscape of mammalian organogenesis
inferredcites →https://doi.org/10.1038/s41586-020-2093-3openalex-snapshot
An atlas of dynamic chromatin landscapes in mouse fetal development
inferredcites →https://doi.org/10.1038/s41587-021-00865-zopenalex-snapshot
Single-cell CUT&Tag analysis of chromatin modifications in differentiation and tumor progression
inferredcites →https://doi.org/10.1038/s41587-021-00869-9openalex-snapshot
Single-cell CUT&Tag profiles histone modifications and transcription factors in complex tissues
inferredcites →https://doi.org/10.1038/s41588-019-0424-9openalex-snapshot
High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer
inferredcites →https://doi.org/10.1038/s41588-021-00790-6openalex-snapshot
ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis
inferredcites →https://doi.org/10.1038/s41592-019-0548-yopenalex-snapshot
High-definition spatial transcriptomics for in situ tissue profiling
inferredcites →https://doi.org/10.1038/s41592-020-01038-7openalex-snapshot
Spatially resolved transcriptomics adds a new dimension to genomics
inferredcites →https://doi.org/10.1073/pnas.1002530107openalex-snapshot
Ezh2, the histone methyltransferase of PRC2, regulates the balance between self-renewal and differentiation in the cerebral cortex
inferredcites →https://doi.org/10.1073/pnas.1416756112openalex-snapshot
Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands
inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-snapshot
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
inferredcites →https://doi.org/10.1093/cercor/bhp038openalex-snapshot
Characterization of Nkx6-2-Derived Neocortical Interneuron Lineages
inferredcites →https://doi.org/10.1093/nar/gkl822openalex-snapshot
VISTA Enhancer Browser--a database of tissue-specific human enhancers
inferredcites →https://doi.org/10.1093/nar/gkx026openalex-snapshot
Bisulfite-independent analysis of CpG island methylation enables genome-scale stratification of single cells
inferredcites →https://doi.org/10.1093/nar/gky1173openalex-snapshot
scFTD-seq: freeze-thaw lysis based, portable approach toward highly distributed single-cell 3′ mRNA profiling
inferredcites →https://doi.org/10.1101/2020.09.02.279703openalex-snapshot
Single-cell profiling of histone modifications in the mouse brain
inferredcites →https://doi.org/10.1101/2020.10.13.338475openalex-snapshot
Spatial transcriptome sequencing of FFPE tissues at cellular level
inferredcites →https://doi.org/10.1101/2021.07.09.451758openalex-snapshot
Tn5 transposase-based epigenomic profiling methods are prone to open chromatin bias
inferredcites →https://doi.org/10.1126/science.1258367openalex-snapshot
Combinatorial labeling of single cells for gene expression cytometry
inferredcites →https://doi.org/10.1126/science.aaf2403openalex-snapshot
Visualization and analysis of gene expression in tissue sections by spatial transcriptomics
inferredcites →https://doi.org/10.1126/science.aan6826openalex-snapshot
Single-cell epigenomics: Recording the past and predicting the future
inferredcites →https://doi.org/10.1126/science.aaw1219openalex-snapshot
Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution
inferredcites →https://doi.org/10.1126/science.abb9536openalex-snapshot
Embryo-scale, single-cell spatial transcriptomics
inferredcites →https://doi.org/10.1146/annurev-bioeng-060418-052538openalex-snapshot
Single-Cell Omics Analyses Enabled by Microchip Technologies
inferredcites →https://doi.org/10.1159/000444713openalex-snapshot
Epigenetic Regulations of GABAergic Neurotransmission: Relevance for Neurological Disorders and Epigenetic Therapy
inferredcites →https://doi.org/10.1186/gb-2008-9-9-r137openalex-snapshot
Model-based Analysis of ChIP-Seq (MACS)
inferredcites →https://doi.org/10.1186/s12915-021-01071-8openalex-snapshot
Single-cell spatial transcriptomic analysis reveals common and divergent features of developing postnatal granule cerebellar cells and medulloblastoma
inferredcites →https://doi.org/10.1186/s13059-015-0684-3openalex-snapshot
Scalable microfluidics for single-cell RNA printing and sequencing
inferredcites →https://doi.org/10.1186/s13059-016-0950-zopenalex-snapshot
Simultaneous profiling of transcriptome and DNA methylome from a single cell
inferredcites →https://doi.org/10.1186/s13059-020-02048-6openalex-snapshot
Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows
inferredcites →https://doi.org/10.3389/fcell.2018.00108openalex-snapshot
Experimental Considerations for Single-Cell RNA Sequencing Approaches
inferredcites →https://doi.org/10.7554/elife.63274openalex-snapshot
Efficient chromatin accessibility mapping in situ by nucleosome-tethered tagmentation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4648584openalex-extracted
inferred← citeshttps://doi.org/10.1002/1878-0261.70310openalex-snapshot
Spatial biology in cancer epigenetics
inferred← citeshttps://doi.org/10.1002/adma.202307051openalex-snapshot
Microfluidic Platforms for Real‐Time In Situ Monitoring of Biomarkers for Cellular Processes
inferred← citeshttps://doi.org/10.1002/advs.202206939openalex-snapshot
Spatial Transcriptomics: Technical Aspects of Recent Developments and Their Applications in Neuroscience and Cancer Research
inferred← citeshttps://doi.org/10.1002/advs.202302558openalex-snapshot
Spatially Resolved Transcriptomics Technology Facilitates Cancer Research
inferred← citeshttps://doi.org/10.1002/advs.202309290openalex-snapshot
Histone H3K9 Lactylation Confers Temozolomide Resistance in Glioblastoma via LUC7L2‐Mediated MLH1 Intron Retention
inferred← citeshttps://doi.org/10.1002/advs.202401263openalex-snapshot
Microfluidic Biochips for Single‐Cell Isolation and Single‐Cell Analysis of Multiomics and Exosomes
inferred← citeshttps://doi.org/10.1002/advs.202506313openalex-snapshot
Regulating PPARG Reduces Lipid Accumulation in Microglia and Promotes Functional Recovery After Spinal Cord Injury
inferred← citeshttps://doi.org/10.1002/advs.202512973openalex-snapshot
SpaBalance: Balanced Learning for Efficient Spatial Multi‐Omics Decoding
inferred← citeshttps://doi.org/10.1002/advs.202518084openalex-snapshot
Single‐Cell Mitochondrial Lineage Tracing Decodes Fate Decision and Spatial Clonal Architecture in Human Hematopoietic Organoids
inferred← citeshttps://doi.org/10.1002/cnr2.70682openalex-snapshot
A Review of Senescence‐Associated Secretory Phenotype‐Mediated Remodeling of the Tumor Microenvironment: Implications for Cancer Progression and Therapy
inferred← citeshttps://doi.org/10.1002/cphy.c210053openalex-snapshot
Spatial Single‐Cell Technologies for Exploring Gastrointestinal Tissue Transcriptome
inferred← citeshttps://doi.org/10.1002/ctm2.669openalex-snapshot
Clinical challenges of tissue preparation for spatial transcriptome
inferred← citeshttps://doi.org/10.1002/ctm2.696openalex-snapshot
Spatial omics: Navigating to the golden era of cancer research
inferred← citeshttps://doi.org/10.1002/ctm2.70331openalex-snapshot
Unravelling tumour spatiotemporal heterogeneity using spatial multimodal data
inferred← citeshttps://doi.org/10.1002/glia.24621openalex-snapshot
Are we there yet? Exploring astrocyte heterogeneity one cell at a time
inferred← citeshttps://doi.org/10.1002/glia.24655openalex-snapshot
Multiple Sclerosis: Glial Cell Diversity in Time and Space
inferred← citeshttps://doi.org/10.1002/ijc.35307openalex-snapshot
A hitchhiker's guide to single‐cell epigenomics: Methods and applications for cancer research
inferred← citeshttps://doi.org/10.1002/imt2.70146openalex-snapshot
Spatial omics in the AI era: Technologies, algorithmic ecosystems, biological applications, and large model perspectives
inferred← citeshttps://doi.org/10.1002/j.2040-4603.2023.tb00266.xopenalex-snapshot
Spatial Single‐Cell Technologies for Exploring Gastrointestinal Tissue Transcriptome
inferred← citeshttps://doi.org/10.1002/mco2.70328openalex-snapshot
Spatiotemporal Dynamics of Central Nervous System Diseases: Advancing Translational Neuropathology via Single‐Cell and Spatial Multiomics
inferred← citeshttps://doi.org/10.1002/mco2.70655openalex-snapshot
Chromatin Accessibility in Cancer: Biological Functions, Mechanisms, Therapeutic Potential, and Future Directions
inferred← citeshttps://doi.org/10.1002/mco2.70713openalex-snapshot
Single‐Cell and Spatial Omics: Methods and Applications
inferred← citeshttps://doi.org/10.1002/mco2.70765openalex-snapshot
Histone Modifications in Cardiovascular Disease: Mechanisms and Therapeutic Opportunities
inferred← citeshttps://doi.org/10.1002/msp2.16openalex-snapshot
An overview of multiomics: a powerful tool applied in cancer molecular subtyping for cancer therapy
inferred← citeshttps://doi.org/10.1002/path.6158openalex-snapshot
Implications of tumour heterogeneity on cancer evolution and therapy resistance: lessons from breast cancer
inferred← citeshttps://doi.org/10.1002/pro.4458openalex-snapshot
In situ tools for chromatin structural epigenomics
inferred← citeshttps://doi.org/10.1002/prp2.1171openalex-snapshot
Epigenetics in obesity: Mechanisms and advances in therapies based on natural products
inferred← citeshttps://doi.org/10.1002/smtd.202401171openalex-snapshot
Advances in Spatial Omics Technologies
inferred← citeshttps://doi.org/10.1002/viw.20220034openalex-snapshot
Microfluidic single‐cell multiomics analysis
inferred← citeshttps://doi.org/10.1007/978-1-0716-4051-7_22openalex-snapshot
Summary of ChIP-Seq Methods and Description of an Optimized ChIP-Seq Protocol
inferred← citeshttps://doi.org/10.1007/978-1-0716-4071-5_9openalex-snapshot
Estrogen Receptor Chromatin Profiling by CUT&RUN
inferred← citeshttps://doi.org/10.1007/978-1-0716-4972-5_3openalex-snapshot
Cleavage Under Targets and Tagmentation (CUT&Tag) Protocol for Plants
inferred← citeshttps://doi.org/10.1007/978-3-031-68550-7_19openalex-snapshot
New Genome-Wide Technologies to Study Activity-Regulated Transcription
inferred← citeshttps://doi.org/10.1007/978-3-031-69188-1_6openalex-snapshot
Spatial Omics: Navigating Neuroscience Research into the New Era
inferred← citeshttps://doi.org/10.1007/978-981-16-1610-5_30openalex-snapshot
Nanotoxicity Evaluation Methods
inferred← citeshttps://doi.org/10.1007/978-981-95-6845-1_4openalex-snapshot
Cancer Epigenomics in Precision Medicine
inferred← citeshttps://doi.org/10.1007/978-981-95-9789-5_10openalex-snapshot
Single-Cell Analysis for Cancer
inferred← citeshttps://doi.org/10.1007/s00210-025-04057-3openalex-snapshot
Mapping molecular landscapes in triple-negative breast cancer: insights from spatial transcriptomics
inferred← citeshttps://doi.org/10.1007/s00216-026-06396-3openalex-snapshot
Advances in spatial omics for the analysis of prostate cancer
inferred← citeshttps://doi.org/10.1007/s11427-023-2561-0openalex-snapshot
Single-cell omics: experimental workflow, data analyses and applications
inferred← citeshttps://doi.org/10.1007/s11427-024-2770-xopenalex-snapshot
Advances and applications in single-cell and spatial genomics
inferred← citeshttps://doi.org/10.1007/s11816-025-00967-zopenalex-snapshot
Recent progress in single-cell transcriptomic studies in plants
inferred← citeshttps://doi.org/10.1007/s12274-024-6925-6openalex-snapshot
Protein-nucleic acid hybrid nanostructures for molecular diagnostic applications
inferred← citeshttps://doi.org/10.1007/s12551-024-01179-5openalex-snapshot
Single-cell lineage tracing with endogenous markers
inferred← citeshttps://doi.org/10.1007/s42994-025-00237-0openalex-snapshot
Cis-regulatory elements: systematic identification and horticultural applications
inferred← citeshttps://doi.org/10.1016/b978-0-323-91367-6.00001-5openalex-snapshot
Epigenomic profiling at genome scale: from assays and analysis to clinical insights
inferred← citeshttps://doi.org/10.1016/b978-0-443-15754-7.00076-6openalex-snapshot
Transcriptional and epigenetic regulation of memory storage
inferred← citeshttps://doi.org/10.1016/b978-0-443-18661-5.00022-1openalex-snapshot
Emerging role of epigenetics in human neurodevelopmental disorders
inferred← citeshttps://doi.org/10.1016/b978-0-443-21903-0.00003-5openalex-snapshot
Introduction to genomics
inferred← citeshttps://doi.org/10.1016/b978-0-443-26759-8.00003-5openalex-snapshot
CUT&RUN and CUT&Tag for histone modification and transcription factor binding analyses
inferred← citeshttps://doi.org/10.1016/bs.ctdb.2024.11.005openalex-snapshot
Understanding developing kidneys and Wilms tumors one cell at a time
inferred← citeshttps://doi.org/10.1016/j.apsb.2024.04.022openalex-snapshot
Unlocking T cell exhaustion: Insights and implications for CAR-T cell therapy
inferred← citeshttps://doi.org/10.1016/j.arr.2023.102158openalex-snapshot
Spatial omics: An innovative frontier in aging research
inferred← citeshttps://doi.org/10.1016/j.arr.2026.103189openalex-snapshot
Spatial transcriptomics and multi-omics approach to decipher age-related tissue microenvironments and therapeutics in neurodegeneration and aging
inferred← citeshttps://doi.org/10.1016/j.bbcan.2021.188663openalex-snapshot
Spatial mapping of cancer tissues by OMICS technologies
inferred← citeshttps://doi.org/10.1016/j.bcmd.2023.102745openalex-snapshot
High-throughput methods for the analysis of transcription factors and chromatin modifications: Low input, single cell and spatial genomic technologies
inferred← citeshttps://doi.org/10.1016/j.biopsych.2024.05.017openalex-snapshot
Omics Approaches to Investigate the Pathogenesis of Suicide
inferred← citeshttps://doi.org/10.1016/j.biopsych.2025.08.012openalex-snapshot
CUT&RUN as a Powerful Tool for Chromatin Profiling: A Focus on Neuropsychiatric Disorders
inferred← citeshttps://doi.org/10.1016/j.biosx.2024.100480openalex-snapshot
Advancement of organ-on-chip towards next generation medical technology
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2025.108649openalex-snapshot
Epigenetic reprogramming holds promise in enhancing anti-tumor efficacy of CAR T cell therapy
inferred← citeshttps://doi.org/10.1016/j.canlet.2026.218321openalex-snapshot
The histone-modified landscape: Core mechanisms of osimertinib resistance in EGFR-mutant lung cancer
inferred← citeshttps://doi.org/10.1016/j.ccell.2022.08.011openalex-snapshot
Clinical application of advanced multi-omics tumor profiling: Shaping precision oncology of the future
inferred← citeshttps://doi.org/10.1016/j.ccell.2023.01.010openalex-snapshot
Spatial profiling technologies illuminate the tumor microenvironment
inferred← citeshttps://doi.org/10.1016/j.ceb.2022.102133openalex-snapshot
Emergence of neuron types
inferred← citeshttps://doi.org/10.1016/j.cej.2026.179605openalex-snapshot
HiMA-seq enables cost-effective spatiotemporal transcriptomics with high sensitivity and flexible multiplexity
inferred← citeshttps://doi.org/10.1016/j.cell.2021.05.010openalex-snapshot
Microscopic examination of spatial transcriptome using Seq-Scope
inferred← citeshttps://doi.org/10.1016/j.cell.2022.09.035openalex-snapshot
Spatially resolved epigenomic profiling of single cells in complex tissues
inferred← citeshttps://doi.org/10.1016/j.cell.2022.10.014openalex-snapshot
Omics goes spatial epigenomics
inferred← citeshttps://doi.org/10.1016/j.cell.2024.07.040openalex-snapshot
Spatiotemporal omics for biology and medicine
inferred← citeshttps://doi.org/10.1016/j.cell.2026.07.039openalex-snapshot
Integrative spatial profiling of 3D genome organization and gene expression in tissue
inferred← citeshttps://doi.org/10.1016/j.cels.2023.08.005openalex-snapshot
DNA-GPS: A theoretical framework for optics-free spatial genomics and synthesis of current methods
inferred← citeshttps://doi.org/10.1016/j.cels.2023.10.003openalex-snapshot
A framework for ultra-low-input spatial tissue proteomics
inferred← citeshttps://doi.org/10.1016/j.cels.2024.10.006openalex-snapshot
Systematic analysis identifies a connection between spatial and genomic variations of chromatin states
inferred← citeshttps://doi.org/10.1016/j.cobme.2026.100664openalex-snapshot
Functional epigenetic dynamics and transcriptional heterogeneity: Recent advances
inferred← citeshttps://doi.org/10.1016/j.coi.2022.102173openalex-snapshot
One genome, many cell states: epigenetic control of innate immunity
inferred← citeshttps://doi.org/10.1016/j.conb.2023.102829openalex-snapshot
From cellular to fear memory: An epigenetic toolbox to remember
inferred← citeshttps://doi.org/10.1016/j.copbio.2024.103111openalex-snapshot
Spatial omics techniques and data analysis for cancer immunotherapy applications
inferred← citeshttps://doi.org/10.1016/j.crmeth.2023.100670openalex-snapshot
Systems immunology spanning tumors, lymph nodes, and periphery
inferred← citeshttps://doi.org/10.1016/j.crmeth.2024.100738openalex-snapshot
Epigenomic tomography for probing spatially defined chromatin state in the brain
inferred← citeshttps://doi.org/10.1016/j.crmeth.2026.101456openalex-snapshot
Spatial multi-omics imputation and embedding with SpaMIE
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.03.002openalex-snapshot
Computational methods for alignment and integration of spatially resolved transcriptomics data
inferred← citeshttps://doi.org/10.1016/j.devcel.2026.05.004openalex-snapshot
Dissecting human organ development using spatial technologies
inferred← citeshttps://doi.org/10.1016/j.devcel.2026.09.004openalex-snapshot
Spatially resolved genome architecture in mouse embryonic development
inferred← citeshttps://doi.org/10.1016/j.ejcb.2026.151552openalex-snapshot
Epigenetic regulation of non-apoptotic regulated cell death
inferred← citeshttps://doi.org/10.1016/j.engmed.2026.100139openalex-snapshot
Joint library preparation and analysis methods for single-cell genome-transcriptome co-assays
inferred← citeshttps://doi.org/10.1016/j.exphem.2026.105489openalex-snapshot
Hematopoietic Stem Cell States, Function, and Molecular Identity: From Quantitative Assays to Modern Multiomics
inferred← citeshttps://doi.org/10.1016/j.fmre.2026.04.033openalex-snapshot
Spatial Omics Revisits Cancer Immunity and Reshapes Immunotherapy
inferred← citeshttps://doi.org/10.1016/j.gde.2022.101947openalex-snapshot
Single-cell technologies: a new lens into epigenetic regulation in development
inferred← citeshttps://doi.org/10.1016/j.gde.2023.102146openalex-snapshot
Deciphering microglia phenotypes in health and disease
inferred← citeshttps://doi.org/10.1016/j.gpb.2023.06.003openalex-snapshot
Decoding Human Biology and Disease Using Single-Cell Omics Technologies
inferred← citeshttps://doi.org/10.1016/j.isci.2025.112092openalex-snapshot
Elucidating neuroepigenetic mechanisms to inform targeted therapeutics for brain disorders
inferred← citeshttps://doi.org/10.1016/j.it.2022.04.008openalex-snapshot
Macrophage diversity in cancer revisited in the era of single-cell omics
inferred← citeshttps://doi.org/10.1016/j.jdsr.2023.10.006openalex-snapshot
Multi-omics analysis in developmental bone biology
inferred← citeshttps://doi.org/10.1016/j.jgg.2023.03.011openalex-snapshot
Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges
inferred← citeshttps://doi.org/10.1016/j.jgg.2025.09.003openalex-snapshot
The application and prospects of spatial omics technologies in clinical medical research and molecular diagnostics
inferred← citeshttps://doi.org/10.1016/j.jid.2024.09.006openalex-snapshot
Emerging Techniques in Spatial Multiomics: Fundamental Principles and Applications to Dermatology
inferred← citeshttps://doi.org/10.1016/j.jpha.2023.06.011openalex-snapshot
Integrative multi-omics and systems bioinformatics in translational neuroscience: A data mining perspective
inferred← citeshttps://doi.org/10.1016/j.jpha.2023.07.002openalex-snapshot
Single-cell and spatially resolved omics: Advances and limitations
inferred← citeshttps://doi.org/10.1016/j.mam.2024.101276openalex-snapshot
A practical guide to spatial transcriptomics
inferred← citeshttps://doi.org/10.1016/j.molcel.2022.05.022openalex-snapshot
Unbiased spatial proteomics with single-cell resolution in tissues
inferred← citeshttps://doi.org/10.1016/j.neuron.2022.09.030openalex-snapshot
The industrial genomic revolution: A new era in neuroimmunology
inferred← citeshttps://doi.org/10.1016/j.pathol.2025.10.003openalex-snapshot
Spatial transcriptomics in bone research: navigating hype and hurdles
inferred← citeshttps://doi.org/10.1016/j.patter.2026.101592openalex-snapshot
Multimodal spatial omics: From data acquisition to computational integration
inferred← citeshttps://doi.org/10.1016/j.plaphy.2023.108206openalex-snapshot
Genomic and epigenomic insights into the mechanism of cold response in upland cotton (Gossypium hirsutum)
inferred← citeshttps://doi.org/10.1016/j.pmpp.2025.103021openalex-snapshot
Molecular spotlights of deterministic sentinel pattern recognition receptors: from priming immunity to engineering specificities for robust plant resilience
inferred← citeshttps://doi.org/10.1016/j.sbi.2024.102948openalex-snapshot
Short circuit: Transcription factor addiction as a growing vulnerability in cancer
inferred← citeshttps://doi.org/10.1016/j.sbi.2025.103064openalex-snapshot
Profiling regulatory elements in vivo by genome-wide methods
inferred← citeshttps://doi.org/10.1016/j.scib.2023.04.032openalex-snapshot
Spatial multi-omics co-sequencing provides new opportunity for in situ transcriptional regulation study
inferred← citeshttps://doi.org/10.1016/j.semcancer.2025.12.009openalex-snapshot
Spatial multi-omics in precision medicine: Integrating biological insights through multidisciplinary collaboration
inferred← citeshttps://doi.org/10.1016/j.semcdb.2025.01.001openalex-snapshot
Towards deciphering the bone marrow microenvironment with spatial multi-omics
inferred← citeshttps://doi.org/10.1016/j.semcdb.2025.103657openalex-snapshot
How to get the most out of your cancer spatial transcriptomics data
inferred← citeshttps://doi.org/10.1016/j.seminoncol.2025.152389openalex-snapshot
From tissue architecture to clinical insights: Spatial transcriptomics in solid tumor studies
inferred← citeshttps://doi.org/10.1016/j.semss.2025.101236openalex-snapshot
“Omics”: the emerging molecular basis of spine research
inferred← citeshttps://doi.org/10.1016/j.smim.2025.101958openalex-snapshot
The spatial and single-cell landscape of skin: Charting the multiscale regulation of skin immune function
inferred← citeshttps://doi.org/10.1016/j.stem.2023.09.010openalex-snapshot
Epigenetic regulation of early human embryo development
inferred← citeshttps://doi.org/10.1016/j.stress.2025.101144openalex-snapshot
A review of the advances and perspectives in sequencing technologies for analysing plant epigenetic responses to abiotic stress
inferred← citeshttps://doi.org/10.1016/j.tig.2025.05.002openalex-snapshot
Spatial omics enters the microscopic realm: opportunities and challenges
inferred← citeshttps://doi.org/10.1016/j.tplants.2025.03.007openalex-snapshot
Harnessing transposable elements for plant functional genomics and genome engineering
inferred← citeshttps://doi.org/10.1016/j.tplants.2025.10.005openalex-snapshot
Advances in plant spatial multi-omics data analysis
inferred← citeshttps://doi.org/10.1016/j.trac.2022.116868openalex-snapshot
Microfluidics-based single cell analysis: from transcriptomics to spatiotemporal multi-omics
inferred← citeshttps://doi.org/10.1016/j.trac.2026.118901openalex-snapshot
Towards digital biology: Recent advances in spatial biology for organogenesis and regeneration
inferred← citeshttps://doi.org/10.1016/j.trecan.2022.06.005openalex-snapshot
Single cell cancer epigenetics
inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100446openalex-snapshot
Revealing spatial multimodal heterogeneity in tissues with SpaTrio
inferred← citeshttps://doi.org/10.1016/j.xgen.2024.100723openalex-snapshot
scTrends: A living review of commercial single-cell and spatial 'omic technologies
inferred← citeshttps://doi.org/10.1016/j.xjidi.2023.100198openalex-snapshot
The Use of Single-Cell RNA-Sequencing and Spatial Transcriptomics in Understanding the Pathogenesis and Treatment of Skin Diseases
inferred← citeshttps://doi.org/10.1016/j.xplc.2022.100508openalex-snapshot
Single-cell and spatial multi-omics in the plant sciences: Technical advances, applications, and perspectives
inferred← citeshttps://doi.org/10.1016/j.xplc.2026.102070openalex-snapshot
Spatial transcriptomics in plants: From cellular maps to mechanistic insight
inferred← citeshttps://doi.org/10.1016/j.ymeth.2026.07.007openalex-snapshot
Mapping protein–DNA interactions across biological scales: principles, scalability and applications
inferred← citeshttps://doi.org/10.1021/acsmeasuresciau.2c00011openalex-snapshot
Multiplexed Single-Cell in Situ Protein Profiling
inferred← citeshttps://doi.org/10.1021/acsnano.2c05494openalex-snapshot
Integrating Micro and Nano Technologies for Cell Engineering and Analysis: Toward the Next Generation of Cell Therapy Workflows
inferred← citeshttps://doi.org/10.1021/acsnano.4c11505openalex-snapshot
Applications of Nanotechnology for Spatial Omics: Biological Structures and Functions at Nanoscale Resolution
inferred← citeshttps://doi.org/10.1021/jacsau.4c00118openalex-snapshot
Next-Generation Sequencing-Based Spatial Transcriptomics: A Perspective from Barcoding Chemistry
inferred← citeshttps://doi.org/10.1021/prechem.5c00014openalex-snapshot
Advances in Epigenomic Sequencing and Their Applications in Cancer Diagnostics
inferred← citeshttps://doi.org/10.1038/d41586-023-00436-zopenalex-snapshot
Gene expression and epigenetic regulation co-mapped in brain tissues
inferred← citeshttps://doi.org/10.1038/s41368-021-00146-0openalex-snapshot
From bulk, single-cell to spatial RNA sequencing
inferred← citeshttps://doi.org/10.1038/s41388-023-02817-0openalex-snapshot
DDX18 drives tumor immune escape through transcription-activated STAT1 expression in pancreatic cancer
inferred← citeshttps://doi.org/10.1038/s41388-026-03758-0openalex-snapshot
Multi-omics approaches reveal erythroid progenitor cell in cancer: from passive bystander to active player
inferred← citeshttps://doi.org/10.1038/s41392-022-00990-4openalex-snapshot
High-throughput single-сell sequencing in cancer research
inferred← citeshttps://doi.org/10.1038/s41419-026-08685-2openalex-snapshot
Decoding the CAF–TAM axis: multi-omics dissection and therapeutic targeting of stromal–immune crosstalk in the tumor microenvironment
inferred← citeshttps://doi.org/10.1038/s41467-022-31739-wopenalex-snapshot
Identifying multicellular spatiotemporal organization of cells with SpaceFlow
inferred← citeshttps://doi.org/10.1038/s41467-023-37111-wopenalex-snapshot
Spatial transcriptomics using multiplexed deterministic barcoding in tissue
inferred← citeshttps://doi.org/10.1038/s41467-023-41019-wopenalex-snapshot
Barcoded multiple displacement amplification for high coverage sequencing in spatial genomics
inferred← citeshttps://doi.org/10.1038/s41467-023-41666-zopenalex-snapshot
Epigenomic analysis of formalin-fixed paraffin-embedded samples by CUT&Tag
inferred← citeshttps://doi.org/10.1038/s41467-024-50308-xopenalex-snapshot
SANTO: a coarse-to-fine alignment and stitching method for spatial omics
inferred← citeshttps://doi.org/10.1038/s41467-024-50837-5openalex-snapshot
Tissue characterization at an enhanced resolution across spatial omics platforms with deep generative model
inferred← citeshttps://doi.org/10.1038/s41467-024-55204-yopenalex-snapshot
Cooperative integration of spatially resolved multi-omics data with COSMOS
inferred← citeshttps://doi.org/10.1038/s41467-025-56523-4openalex-snapshot
Spatial integration of multi-omics single-cell data with SIMO
inferred← citeshttps://doi.org/10.1038/s41467-025-61797-9openalex-snapshot
DynaTag for efficient mapping of transcription factors in low-input samples and at single-cell resolution
inferred← citeshttps://doi.org/10.1038/s41467-026-69346-8openalex-snapshot
Seq-Scope-eXpanded: spatial omics beyond optical resolution
inferred← citeshttps://doi.org/10.1038/s41467-026-71349-4openalex-snapshot
Sequential transcriptional waves and NF-κB-driven chromatin remodeling direct drug-induced dedifferentiation in cancer
inferred← citeshttps://doi.org/10.1038/s41467-026-71576-9openalex-snapshot
Spatially decoding genotype-associated epigenetic landscapes in human lymphoma FFPE tissues via epi-Patho-DBiT
inferred← citeshttps://doi.org/10.1038/s41467-026-73325-4openalex-snapshot
A scalable Tn5-based method for genome-wide DNA methylation profiling in development and disease
inferred← citeshttps://doi.org/10.1038/s41467-026-73599-8openalex-snapshot
PATTY corrects open-chromatin bias for improved bulk and single-cell CUT&Tag profiling
inferred← citeshttps://doi.org/10.1038/s41551-024-01225-3openalex-snapshot
Bidirectional linkage of DNA barcodes for the multiplexed mapping of higher-order protein interactions in cells
inferred← citeshttps://doi.org/10.1038/s41551-024-01229-zopenalex-snapshot
Sensing and guiding cell-state transitions by using genetically encoded endoribonuclease-mediated microRNA sensors
inferred← citeshttps://doi.org/10.1038/s41556-024-01435-6openalex-snapshot
A single-cell atlas of chromatin accessibility in mouse organogenesis
inferred← citeshttps://doi.org/10.1038/s41568-024-00757-9openalex-snapshot
Epigenomic heterogeneity as a source of tumour evolution
inferred← citeshttps://doi.org/10.1038/s41568-026-00940-0openalex-snapshot
3D multi-omics tumour atlases: from technology to biology and clinical translation
inferred← citeshttps://doi.org/10.1038/s41569-021-00597-2openalex-snapshot
Genomic enhancers in cardiac development and disease
inferred← citeshttps://doi.org/10.1038/s41569-025-01223-1openalex-snapshot
Cardiac epigenome in heart development and disease
inferred← citeshttps://doi.org/10.1038/s41571-023-00729-2openalex-snapshot
Advancing CAR T cell therapy through the use of multidimensional omics data
inferred← citeshttps://doi.org/10.1038/s41573-022-00615-zopenalex-snapshot
Rational combinations of targeted cancer therapies: background, advances and challenges
inferred← citeshttps://doi.org/10.1038/s41576-021-00370-8openalex-snapshot
Integrating single-cell and spatial transcriptomics to elucidate intercellular tissue dynamics
inferred← citeshttps://doi.org/10.1038/s41576-022-00468-7openalex-snapshot
Histone post-translational modifications — cause and consequence of genome function
inferred← citeshttps://doi.org/10.1038/s41576-022-00509-1openalex-snapshot
Characterizing cis-regulatory elements using single-cell epigenomics
inferred← citeshttps://doi.org/10.1038/s41576-022-00515-3openalex-snapshot
The emerging landscape of spatial profiling technologies
inferred← citeshttps://doi.org/10.1038/s41576-022-00553-xopenalex-snapshot
Spatial biology of cancer evolution
inferred← citeshttps://doi.org/10.1038/s41576-023-00580-2openalex-snapshot
Methods and applications for single-cell and spatial multi-omics
inferred← citeshttps://doi.org/10.1038/s41576-023-00598-6openalex-snapshot
Interpreting non-coding disease-associated human variants using single-cell epigenomics
inferred← citeshttps://doi.org/10.1038/s41576-025-00845-yopenalex-snapshot
Cell-type deconvolution methods for spatial transcriptomics
inferred← citeshttps://doi.org/10.1038/s41576-025-00892-5openalex-snapshot
Spatial architecture of development and disease
inferred← citeshttps://doi.org/10.1038/s41580-023-00615-wopenalex-snapshot
The technological landscape and applications of single-cell multi-omics
inferred← citeshttps://doi.org/10.1038/s41583-025-00926-1openalex-snapshot
Exploring the complexity of MECP2 function in Rett syndrome
inferred← citeshttps://doi.org/10.1038/s41583-026-01074-wopenalex-snapshot
Early life experiences, the neural epigenome and affective disorder risk
inferred← citeshttps://doi.org/10.1038/s41586-021-03634-9openalex-snapshot
Exploring tissue architecture using spatial transcriptomics
inferred← citeshttps://doi.org/10.1038/s41586-022-05094-1openalex-snapshot
Spatial profiling of chromatin accessibility in mouse and human tissues
inferred← citeshttps://doi.org/10.1038/s41586-023-05795-1openalex-snapshot
Spatial epigenome–transcriptome co-profiling of mammalian tissues
inferred← citeshttps://doi.org/10.1038/s41586-023-06641-0openalex-snapshot
The sex-specific factor SOA controls dosage compensation in Anopheles mosquitoes
inferred← citeshttps://doi.org/10.1038/s41586-025-08710-yopenalex-snapshot
Towards multimodal foundation models in molecular cell biology
inferred← citeshttps://doi.org/10.1038/s41586-025-09663-yopenalex-snapshot
Spatial dynamics of brain development and neuroinflammation
inferred← citeshttps://doi.org/10.1038/s41587-022-01522-9openalex-snapshot
Multifactorial profiling of epigenetic landscapes at single-cell resolution using MulTI-Tag
inferred← citeshttps://doi.org/10.1038/s41587-022-01603-9openalex-snapshot
Solid-phase capture and profiling of open chromatin by spatial ATAC
inferred← citeshttps://doi.org/10.1038/s41587-023-01979-2openalex-snapshot
Spatial metatranscriptomics resolves host–bacteria–fungi interactomes
inferred← citeshttps://doi.org/10.1038/s41587-025-02596-xopenalex-snapshot
Putting cancer immunotherapy into spatial context in the clinic
inferred← citeshttps://doi.org/10.1038/s41587-026-03328-5openalex-snapshot
Photolabile oligonucleotides with topological light gradients enable spatially resolved single-cell transcriptomics and epigenomics
inferred← citeshttps://doi.org/10.1038/s41588-023-01588-4openalex-snapshot
CellCharter reveals spatial cell niches associated with tissue remodeling and cell plasticity
inferred← citeshttps://doi.org/10.1038/s41588-026-02542-wopenalex-snapshot
The potential of wheat spatial omics
inferred← citeshttps://doi.org/10.1038/s41588-026-02573-3openalex-snapshot
Mosaic integration of spatial multi-omics with SpaMosaic
inferred← citeshttps://doi.org/10.1038/s41592-023-01845-8openalex-snapshot
Photoselective sequencing: microscopically guided genomic measurements with subcellular resolution
inferred← citeshttps://doi.org/10.1038/s41592-023-01884-1openalex-snapshot
Simultaneous profiling of spatial gene expression and chromatin accessibility during mouse brain development
inferred← citeshttps://doi.org/10.1038/s41592-024-02453-wopenalex-snapshot
scNanoSeq-CUT&Tag: a single-cell long-read CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells
inferred← citeshttps://doi.org/10.1038/s41592-024-02571-5openalex-snapshot
The next generation of in situ multi-omics
inferred← citeshttps://doi.org/10.1038/s41592-024-02576-0openalex-snapshot
Multiplexed spatial mapping of chromatin features, transcriptome and proteins in tissues
inferred← citeshttps://doi.org/10.1038/s41592-025-02622-5openalex-snapshot
Spotiphy enables single-cell spatial whole transcriptomics across an entire section
inferred← citeshttps://doi.org/10.1038/s41592-025-02948-0openalex-snapshot
Integration of imaging-based and sequencing-based spatial omics mapping on the same tissue section via DBiTplus
inferred← citeshttps://doi.org/10.1038/s41592-026-03079-wopenalex-snapshot
Spatial 5mC-seq profiling of embryos and decidua after implantation in mammals
inferred← citeshttps://doi.org/10.1038/s41592-026-03217-4openalex-snapshot
Spatial chromatin architecture and accessibility co-profiling of mammalian tissues
inferred← citeshttps://doi.org/10.1038/s41593-024-01806-0openalex-snapshot
Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery
inferred← citeshttps://doi.org/10.1038/s41596-024-01013-yopenalex-snapshot
Spatially resolved epigenome sequencing via Tn5 transposition and deterministic DNA barcoding in tissue
showing the first 200 of 389 · page through all 389
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.