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Gametophyte genome activation occurs at pollen mitosis I in maize

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/evl3.60openalex-snapshot

The effects of haploid selection on Y chromosome evolution in two closely related dioecious plants

inferredcites →https://doi.org/10.1002/wdev.126openalex-snapshot

Regulation of the seed to seedling developmental phase transition by the LAFL and VAL transcription factor networks

inferredcites →https://doi.org/10.1007/7089_042openalex-snapshot

Pollen Development, a Genetic and Transcriptomic View

inferredcites →https://doi.org/10.1007/bf01507450openalex-snapshot

Studies on the linkage map of chromosome 4 of the tomato and on the transmission of induced deficiencies

inferredcites →https://doi.org/10.1007/bf02441955openalex-snapshot

Pollen selection - past, present and future

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Pollen selection for chilling tolerance at hybridisation leads to improved chickpea cultivars

inferredcites →https://doi.org/10.1007/s10681-005-2042-0openalex-snapshot

Breeding tomato for pollen tolerance to low temperatures by gametophytic selection

inferredcites →https://doi.org/10.1016/0092-8674(94)90364-6openalex-snapshot

Meiotic chromosome pairing in maize is associated with a novel chromatin organization

inferredcites →https://doi.org/10.1016/j.cell.2008.12.038openalex-snapshot

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

inferredcites →https://doi.org/10.1016/j.xplc.2020.100115openalex-snapshot

Evolutionary Genomics of Plant Gametophytic Selection

inferredcites →https://doi.org/10.1021/bi00609a012openalex-snapshot

Developmental regulation in cotton seed germination: polyadenylation of stored messenger RNA

inferredcites →https://doi.org/10.1038/249491a0openalex-snapshot

Correlation between speed of pollen tube growth and seedling height in Zea mays L.

inferredcites →https://doi.org/10.1038/nature22971openalex-snapshot

Improved maize reference genome with single-molecule technologies

inferredcites →https://doi.org/10.1038/nbt.2859openalex-snapshot

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

inferredcites →https://doi.org/10.1038/nmeth.1778openalex-snapshot

Counting absolute numbers of molecules using unique molecular identifiers

inferredcites →https://doi.org/10.1038/nplants.2017.79openalex-snapshot

Sperm cells are passive cargo of the pollen tube in plant fertilization

inferredcites →https://doi.org/10.1038/nplants.2017.8openalex-snapshot

Reducing pesticide use while preserving crop productivity and profitability on arable farms

inferredcites →https://doi.org/10.1038/nprot.2016.095openalex-snapshot

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

inferredcites →https://doi.org/10.1038/nrg3152openalex-snapshot

Transcription as a source of genome instability

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No evidence that carotenoid pigments boost either immune or antioxidant defenses in a songbird

inferredcites →https://doi.org/10.1038/s41467-018-04562-5openalex-snapshot

High-resolution crossover mapping reveals similarities and differences of male and female recombination in maize

inferredcites →https://doi.org/10.1038/s41467-018-05083-xopenalex-snapshot

Detection and removal of barcode swapping in single-cell RNA-seq data

inferredcites →https://doi.org/10.1038/s41576-018-0087-xopenalex-snapshot

Mechanisms regulating zygotic genome activation

inferredcites →https://doi.org/10.1073/pnas.1418918112openalex-snapshot

Spatiotemporally dynamic, cell-type–dependent premeiotic and meiotic phasiRNAs in maize anthers

inferredcites →https://doi.org/10.1073/pnas.1420404112openalex-snapshot

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

inferredcites →https://doi.org/10.1073/pnas.1514265112openalex-snapshot

Recombination patterns in maize reveal limits to crossover homeostasis

inferredcites →https://doi.org/10.1080/01621459.1989.10478797openalex-snapshot

Principal Curves

inferredcites →https://doi.org/10.1093/bioinformatics/btw313openalex-snapshot

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot

fastp: an ultra-fast all-in-one FASTQ preprocessor

inferredcites →https://doi.org/10.1093/molbev/mst149openalex-snapshot

Pollen-Specific, but Not Sperm-Specific, Genes Show Stronger Purifying Selection and Higher Rates of Positive Selection Than Sporophytic Genes in Capsella grandiflora

inferredcites →https://doi.org/10.1093/molbev/mst226openalex-snapshot

Selection-Driven Evolution of Sex-Biased Genes Is Consistent with Sexual Selection in Arabidopsis thaliana

inferredcites →https://doi.org/10.1093/nar/gkp335openalex-snapshot

MEME SUITE: tools for motif discovery and searching

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UMI-tools: Modelling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

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Index switching causes “spreading-of-signal” among multiplexed samples in Illumina HiSeq 4000 DNA sequencing

inferredcites →https://doi.org/10.1101/gr.209601.116openalex-snapshot

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

inferredcites →https://doi.org/10.1104/pp.106.092544openalex-snapshot

Recent Proliferation and Translocation of Pollen Group 1 Allergen Genes in the Maize Genome

inferredcites →https://doi.org/10.1104/pp.92.2.474openalex-snapshot

Developmental Staging of Maize Microspores Reveals a Transition in Developing Microspore Proteins

inferredcites →https://doi.org/10.1105/tpc.5.10.1265openalex-snapshot

Male Gametophyte Development

inferredcites →https://doi.org/10.1105/tpc.7.1.65openalex-snapshot

The Significance of Microspore Division and Division Symmetry for Vegetative Cell-Specific Transcription and Generative Cell Differentiation.

inferredcites →https://doi.org/10.1111/j.1365-313x.2007.03326.xopenalex-snapshot

How to usefully compare homologous plant genes and chromosomes as DNA sequences

inferredcites →https://doi.org/10.1111/tpj.12856openalex-snapshot

Chromatin remodelling during male gametophyte development

inferredcites →https://doi.org/10.1126/science.206.4414.20openalex-snapshot

The Rise of the Angiosperms: A Genecological Factor

inferredcites →https://doi.org/10.1126/science.213.4506.453openalex-snapshot

Evidence for Extensive Overlap of Sporophytic and Gametophytic Gene Expression in Lycopersicon esculentum

inferredcites →https://doi.org/10.1126/science.aav6428openalex-snapshot

Defining the developmental program leading to meiosis in maize

inferredcites →https://doi.org/10.1126/science.abb1723openalex-snapshot

Widespread haploid-biased gene expression enables sperm-level natural selection

inferredcites →https://doi.org/10.1139/g91-089openalex-snapshot

Differential effects of specific chromosomal deficiencies on the development of the maize pollen grain

inferredcites →https://doi.org/10.1146/annurev-ecolsys-110218-024709openalex-snapshot

Haploid Selection in “Diploid” Organisms

inferredcites →https://doi.org/10.1186/gb-2014-15-1-r1openalex-snapshot

Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis

inferredcites →https://doi.org/10.1186/preaccept-2120567568118240openalex-snapshot

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes

inferredcites →https://doi.org/10.1186/s13059-016-0938-8openalex-snapshot

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq

inferredcites →https://doi.org/10.1186/s13059-020-02238-2openalex-snapshot

scMC learns biological variation through the alignment of multiple single-cell genomics datasets

inferredcites →https://doi.org/10.1186/s13059-021-02396-xopenalex-snapshot

Chromosome-level genome assembly of a regenerable maize inbred line A188

inferredcites →https://doi.org/10.1242/dev.152645openalex-snapshot

Pollen differentiation as well as pollen tube guidance and discharge are independent of the presence of gametes

inferredcites →https://doi.org/10.12688/f1000research.9037.1openalex-snapshot

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes

inferredcites →https://doi.org/10.12688/f1000research.9037.2openalex-snapshot

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes

inferredcites →https://doi.org/10.1371/journal.pbio.0030063openalex-snapshot

Recombination Difference between Sexes: A Role for Haploid Selection

inferredcites →https://doi.org/10.1371/journal.pgen.1008462openalex-snapshot

High expression in maize pollen correlates with genetic contributions to pollen fitness as well as with coordinated transcription from neighboring transposable elements

inferredcites →https://doi.org/10.1534/genetics.108.090852openalex-snapshot

A Collection of Ds Insertional Mutants Associated With Defects in Male Gametophyte Development and Function in Arabidopsis thaliana

inferredcites →https://doi.org/10.2307/3869838openalex-snapshot

The Significance of Microspore Division and Division Symmetry for Vegetative Cell-Specific Transcription and Generative Cell Differentiation

inferredcites →https://doi.org/10.3732/ajb.91.11.1939openalex-snapshot

Does pollen competition reduce the cost of inbreeding?

inferredcites →https://doi.org/10.3835/plantgenome2015.04.0025openalex-snapshot

An Expanded Maize Gene Expression Atlas based on RNA Sequencing and its Use to Explore Root Development

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4834779openalex-extracted

Meiosis Achieves Epigenetic Reprogramming Independently of Gametogenesis and Fertilization

inferred← citeshttps://doi.org/10.1002/9780470015902.a0029678openalex-snapshot

Pollen: Structure and Development

inferred← citeshttps://doi.org/10.1002/cm.70003openalex-snapshot

In Vitro Live Cell Imaging Reveals Nuclear Dynamics and Role of the Cytoskeleton During Asymmetric Division of Pollen Mitosis I in Nicotiana Benthamiana

inferred← citeshttps://doi.org/10.1002/pld3.70061openalex-snapshot

A Reference‐Free Algorithm Discovers Regulation in the Plant Transcriptome

inferred← citeshttps://doi.org/10.1002/tpg2.70015openalex-snapshot

Chronic water‐deficit stress may increase meiotic recombination in maize

inferred← citeshttps://doi.org/10.1007/978-1-0716-5245-9_2openalex-snapshot

Molecular Insights into Microspore Embryogenesis: Transcriptomic Dynamics in Barley and Wheat

inferred← citeshttps://doi.org/10.1007/978-981-95-7033-1_7openalex-snapshot

Floral Organ Specification

inferred← citeshttps://doi.org/10.1007/s00497-022-00452-5openalex-snapshot

Regulatory dynamics of gene expression in the developing male gametophyte of Arabidopsis

inferred← citeshttps://doi.org/10.1007/s12374-022-09378-xopenalex-snapshot

Comparative Transcriptomics Identifies Different Gene Expression Networks Regulating Gametic Development in Arabidopsis

inferred← citeshttps://doi.org/10.1007/s40502-026-00924-0openalex-snapshot

Decoding anther development: in-silico identification and characterization of bHLH transcription factor genes in maize (Zea mays L.)

inferred← citeshttps://doi.org/10.1016/bs.agron.2023.11.001openalex-snapshot

The role of artificial intelligence in crop improvement

inferred← citeshttps://doi.org/10.1016/j.jgg.2025.05.005openalex-snapshot

Decoding the complexity of coding and non-coding RNAs across maize anther development at the isoform level

inferred← citeshttps://doi.org/10.1016/j.jgg.2026.03.006openalex-snapshot

A single-nucleus transcriptome atlas of soybean anthers

inferred← citeshttps://doi.org/10.1016/j.pbi.2023.102416openalex-snapshot

The sporophyte-to-gametophyte transition: The haploid generation comes of age

inferred← citeshttps://doi.org/10.1016/j.repbre.2022.05.004openalex-snapshot

Small RNA in plant meiosis and gametogenesis

inferred← citeshttps://doi.org/10.1016/j.ydbio.2024.11.004openalex-snapshot

The establishment of the anther somatic niche with single-cell sequencing

inferred← citeshttps://doi.org/10.1038/s41467-023-43015-6openalex-snapshot

A toxin-antidote system contributes to interspecific reproductive isolation in rice

inferred← citeshttps://doi.org/10.1038/s41467-024-52620-yopenalex-snapshot

Potent pollen gene regulation by DNA glycosylases in maize

inferred← citeshttps://doi.org/10.1038/s41467-026-72218-wopenalex-snapshot

SMG7 and eIF4A constitute a homeostatic module controlling P-body condensation and function of meiotic bodies

inferred← citeshttps://doi.org/10.1038/s41477-023-01370-8openalex-snapshot

Synthetic maize centromeres transmit chromosomes across generations

inferred← citeshttps://doi.org/10.1038/s41477-023-01596-6openalex-snapshot

A molecular mechanism for embryonic resetting of winter memory and restoration of winter annual growth habit in wheat

inferred← citeshttps://doi.org/10.1038/s41477-025-01932-yopenalex-snapshot

Sporophyte-directed gametogenesis in Arabidopsis

inferred← citeshttps://doi.org/10.1038/s41586-024-07788-0openalex-snapshot

Teosinte Pollen Drive guides maize diversification and domestication by RNAi

inferred← citeshttps://doi.org/10.1038/s41596-023-00889-6openalex-snapshot

Single-cell RNA-seq of maize meiocytes and pollen grains

inferred← citeshttps://doi.org/10.1073/pnas.2504773122openalex-snapshot

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

inferred← citeshttps://doi.org/10.1073/pnas.2535316123openalex-snapshot

PAM1 regulates meiosis by coupling RNA processing to the chromosome axis

inferred← citeshttps://doi.org/10.1093/plcell/koac287openalex-snapshot

Anther development—The long road to making pollen

inferred← citeshttps://doi.org/10.1093/plcell/koag048openalex-snapshot

CCCH-type zinc finger proteins are required for meiotic progression and RNA clearance in Arabidopsis

inferred← citeshttps://doi.org/10.1093/plcell/koag128openalex-snapshot

Alternative polyadenylation dynamics shape pollen development at single-cell resolution

inferred← citeshttps://doi.org/10.1093/plcell/koag272openalex-snapshot

Successful predictive modeling of pollen fitness phenotypes is enabled by measures of expression specificity

inferred← citeshttps://doi.org/10.1093/plphys/kiad243openalex-snapshot

Sorted transcripts: A cell type–specific pollen transcriptome for Arabidopsis

inferred← citeshttps://doi.org/10.1093/plphys/kiae177openalex-snapshot

A wave of specific transcript and protein accumulation accompanies pollen dehydration

inferred← citeshttps://doi.org/10.1098/rspb.2023.1854openalex-snapshot

Sexual conflict, heterochrony and tissue specificity as evolutionary problems of adaptive plasticity in development

inferred← citeshttps://doi.org/10.1101/2021.10.11.463960openalex-snapshot

FX-Cell: Quantitative cell release from fixed plant tissues for single-cell genomics

inferred← citeshttps://doi.org/10.1101/2023.05.17.541143openalex-snapshot

Epigenetic reprogramming of imprinting at meiosis

inferred← citeshttps://doi.org/10.1101/2025.05.16.654085openalex-snapshot

Diploid gametes in maize by mutation of A-Type cyclins: a step towards apomeiosis and synthetic apomixis

inferred← citeshttps://doi.org/10.1101/2025.08.17.670746openalex-snapshot

Post-transcriptional regulation of meiotic transcripts by the RNA binding protein CDM1 is associated with cytoplasmic condensate assemblies

inferred← citeshttps://doi.org/10.1111/jipb.70303openalex-snapshot

ZmMS1 coordinates ROS homeostasis, lipid allocation, and male fertility for maize breeding applications

inferred← citeshttps://doi.org/10.1111/jipb.70311openalex-snapshot

ATXR5 and ATXR6 restrict meiotic crossover formation within heterochromatin in Arabidopsis

inferred← citeshttps://doi.org/10.1111/nph.18167openalex-snapshot

24‐nt phasiRNAs move from tapetal to meiotic cells in maize anthers

inferred← citeshttps://doi.org/10.1111/pce.15315openalex-snapshot

Deciphering the Vulnerability of Pollen to Heat Stress for Securing Crop Yields in a Warming Climate

inferred← citeshttps://doi.org/10.1111/tpj.16045openalex-snapshot

Coexpression network and trans‐activation analyses of maize reproductive phasiRNA loci

inferred← citeshttps://doi.org/10.1111/tpj.70760openalex-snapshot

Spatial inheritance patterns across maize ears are associated with alleles that reduce pollen fitness

inferred← citeshttps://doi.org/10.1126/science.abo0904openalex-snapshot

Meiotic exit in Arabidopsis is driven by P-body–mediated inhibition of translation

inferred← citeshttps://doi.org/10.1126/science.adh0755openalex-snapshot

Defective pollen tube tip growth induces neo-polyploid infertility

inferred← citeshttps://doi.org/10.1146/annurev-genet-022123-110824openalex-snapshot

Leveraging Single-Cell Populations to Uncover the Genetic Basis of Complex Traits

inferred← citeshttps://doi.org/10.1186/s12864-022-08922-wopenalex-snapshot

Comparison of meiotic transcriptomes of three maize inbreds with different origins reveals differences in cell cycle and recombination

inferred← citeshttps://doi.org/10.1186/s13059-024-03222-wopenalex-snapshot

DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.1186/s13059-026-04129-4openalex-snapshot

Premeiotic chromatin states orchestrate gene expression during male gametogenesis in rice

inferred← citeshttps://doi.org/10.1186/s13059-026-04226-4openalex-snapshot

GAMETE maps the genetic architecture of chromatin accessibility in rice pollen at single-nucleus resolution

inferred← citeshttps://doi.org/10.1242/dev.203046openalex-snapshot

Meiosis as a mechanism for epigenetic reprogramming and cellular rejuvenation

inferred← citeshttps://doi.org/10.30901/2227-8834-2022-3-39-47openalex-snapshot

Assessment of cold resistance in Momordica charantia l. accessions according to pollen germination at low temperatures in vitro

inferred← citeshttps://doi.org/10.3389/fpls.2022.1058421openalex-snapshot

Microspore embryogenesis induction by mannitol and TSA results in a complex regulation of epigenetic dynamics and gene expression in bread wheat

inferred← citeshttps://doi.org/10.3389/fpls.2023.1121570openalex-snapshot

RNA-seq analysis of synchronized developing pollen isolated from a single anther

inferred← citeshttps://doi.org/10.3389/fpls.2023.1255418openalex-snapshot

Transcriptome analysis provides insight into the regulatory mechanisms underlying pollen germination recovery at normal high ambient temperature in wild banana (Musa itinerans)

inferred← citeshttps://doi.org/10.3390/cells11111753openalex-snapshot

Genetic Structure and Molecular Mechanisms Underlying the Formation of Tassel, Anther, and Pollen in the Male Inflorescence of Maize (Zea mays L.)

inferred← citeshttps://doi.org/10.3390/ijms231810420openalex-snapshot

Epigenetic Dynamics and Regulation of Plant Male Reproduction

inferred← citeshttps://doi.org/10.6084/m9.figshare.25530265openalex-snapshot

Additional file 1 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.25530385openalex-snapshot

Additional file 2 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700706openalex-snapshot

Additional file 3 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700709openalex-snapshot

Additional file 4 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700712openalex-snapshot

Additional file 5 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700715openalex-snapshot

Additional file 6 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700718openalex-snapshot

Additional file 7 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700721openalex-snapshot

Additional file 8 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

inferred← citeshttps://doi.org/10.6084/m9.figshare.26700724openalex-snapshot

Additional file 9 of DNA methylation remodeling and the functional implication during male gametogenesis in rice

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