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Meiosis Achieves Epigenetic Reprogramming Independently of Gametogenesis and Fertilization

https://doi.org/10.2139/ssrn.4834779
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Profiling Transcriptomes of Manually Dissected Arabidopsis Embryos
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ggplot2
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Changes in basic proteins during sperm maturation in a plant, Marchantia polymorpha
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What Can Stem Cell Models Tell Us About Human Germ Cell Biology?
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Insights into Land Plant Evolution Garnered from the Marchantia polymorpha Genome
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Genomic Imprinting and Physiological Processes in Mammals
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Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin
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Identification of the sex-determining factor in the liverwort Marchantia polymorpha reveals unique evolution of sex chromosomes in a haploid system
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The Polycomb repressive complex 2 deposits H3K27me3 and represses transposable elements in a broad range of eukaryotes
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Epigenetic Transitions in Germ Cell Development and Meiosis
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Noncanonical imprinting: intergenerational epigenetic inheritance mediated by Polycomb complexes
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Reprogramming of Meiotic Chromatin Architecture during Spermatogenesis
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Parallels between Mammalian Mechanisms of Monoallelic Gene Expression
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Epigenetic reprogramming enables the transition from primordial germ cell to gonocyte
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Tagmentation-based whole-genome bisulfite sequencing
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Full-length RNA-seq from single cells using Smart-seq2
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Homologous chromosome interactions in meiosis: diversity amidst conservation
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Genomic imprinting: the emergence of an epigenetic paradigm
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Epigenetic dynamics of stem cells and cell lineage commitment: digging Waddington's canal
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Transcription factor DUO1 generated by neo-functionalization is associated with evolution of sperm differentiation in plants
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Cross-stress gene expression atlas of Marchantia polymorpha reveals the hierarchy and regulatory principles of abiotic stress responses
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Building new insights in plant gametogenesis from an evolutionary perspective
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H2AK119ub1 guides maternal inheritance and zygotic deposition of H3K27me3 in mouse embryos
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Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase
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Attenuated chromatin compartmentalization in meiosis and its maturation in sperm development
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Exploring chromatin structural roles of non-coding RNAs at imprinted domains
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Protamines from liverwort are produced by post-translational cleavage and C-terminal di-aminopropanelation of several male germ-specific H1 histones
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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
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The Sequence Alignment/Map format and SAMtools
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BEDTools: a flexible suite of utilities for comparing genomic features
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Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
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STAR: ultrafast universal RNA-seq aligner
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UpSetR: an R package for the visualization of intersecting sets and their properties
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DNA methylation dynamics of genomic imprinting in mouse development†
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Males That Silence Their Father’s Genes: Genomic Imprinting of a Complete Haploid Genome
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Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
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eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
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deepTools2: a next generation web server for deep-sequencing data analysis
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Marchantia polymorpha : Taxonomy, Phylogeny and Morphology of a Model System
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Transcriptional Framework of Male Gametogenesis in the LiverwortMarchantia polymorphaL.
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Loss of CG methylation in Marchantia polymorpha causes disorganization of cell division and reveals unique DNA methylation regulatory mechanisms of non-CG methylation
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The renaissance and enlightenment of Marchantia as a model system
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New insights into establishment and maintenance of DNA methylation imprints in mammals
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Mammalian Genomic Imprinting
inferredcites →https://doi.org/10.1101/cshperspect.a018382openalex-extracted
Genomic Imprinting in Mammals
inferredcites →https://doi.org/10.1101/gad.273805.115openalex-extracted
Building up the nucleus: nuclear organization in the establishment of totipotency and pluripotency during mammalian development
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γ-Tubulin in Basal Land Plants: Characterization, Localization, and Implication in the Evolution of Acentriolar Microtubule Organizing Centers
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Statistical Power Analysis
inferredcites →https://doi.org/10.1111/febs.13988openalex-extracted
Nuclear transplantation, the conservation of the genome, and prospects for cell replacement
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A guide to UFMylation, an emerging posttranslational modification
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Dynamic DNA methylation: In the right place at the right time
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Gametophyte genome activation occurs at pollen mitosis I in maize
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Mechanisms of Selective Autophagy
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Gametogenesis: Exploring an Endogenous Rejuvenation Program to Understand Cellular Aging and Quality Control
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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
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WGCNA: an R package for weighted correlation network analysis
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
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Residual-Based Shadings for Visualizing (Conditional) Independence
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The chromatin source-sink hypothesis: a shared mode of chromatin-mediated regulations
inferredcites →https://doi.org/10.12688/f1000research.7563.1openalex-extracted
Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences
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SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes
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Reprogramming of cell fate: epigenetic memory and the erasure of memories past
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Shuffled ATG8 interacting motifs form an ancestral bridge between UFMylation and autophagy
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The Strucplot Framework: Visualizing Multi-way Contingency Tables withvcd
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effsize: Efficient Effect Size Computation
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Stability and Lability of Parental Methylation Imprints in Development and Disease
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An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites
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Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis
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Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia
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