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Recovering signatures of archaic hominin introgression using ancestral recombination graphs

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Delete-m Jackknife for Unequal m
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New hominid from Lake Ndutu, Tanzania
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Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank
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Robust and accurate Bayesian inference of genome-wide genealogies for hundreds of genomes
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Mutations inCYP24A1and Idiopathic Infantile Hypercalcemia
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CrossMap: a versatile tool for coordinate conversion between genome assemblies
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Model‐based detection and analysis of introgressed Neanderthal ancestry in modern humans
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inferredcites →https://doi.org/10.1126/science.1117196openalex-snapshot
A Fine-Scale Map of Recombination Rates and Hotspots Across the Human Genome
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A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.1224344openalex-snapshot
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inferredcites →https://doi.org/10.1126/science.aad9416openalex-snapshot
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Neanderthal ancestry through time: Insights from genomes of ancient and present-day humans
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The Cytochrome P450 Homepage
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Cytochrome P450-mediated metabolism of vitamin D
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Possible Ancestral Structure in Human Populations
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Widespread Genomic Signatures of Natural Selection in Hominid Evolution
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The Date of Interbreeding between Neandertals and Modern Humans
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Meta-Analysis of Genome-Wide Association Studies Identifies Six New Loci for Serum Calcium Concentrations
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Genome-Wide Inference of Ancestral Recombination Graphs
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The Strength of Selection against Neanderthal Introgression
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Outstanding questions in the study of archaic hominin admixture
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Detecting archaic introgression using an unadmixed outgroup
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Mapping gene flow between ancient hominins through demography-aware inference of the ancestral recombination graph
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Genotype imputation using the Positional Burrows Wheeler Transform
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The Lengths of Admixture Tracts
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The Genetic Cost of Neanderthal Introgression
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The genomic consequences of hybridization
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Limited role of generation time changes in driving the evolution of the mutation spectrum in humans

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The unsurprising way by which information came to be recognised by primordial humans: Reply to comments on "Homo informatio”
inferred← citeshttps://doi.org/10.5281/zenodo.22712961openalex-snapshot
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No signal of a super-archaic origin of the Denisovan AMBN gene, a comment on the protein affinity of Homo erectus and Denisovan enamel proteins
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