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Phylogenomic approaches to detecting and characterizing introgression
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ajb2.1018openalex-snapshot
New prospects in the detection and comparative analysis of hybridization in the tree of life
inferredcites →https://doi.org/10.1002/bies.202000012openalex-snapshot
Ghost Introgression: Spooky Gene Flow in the Distant Past
inferredcites →https://doi.org/10.1002/evl3.159openalex-snapshot
Assessing biological factors affecting postspeciation introgression
inferredcites →https://doi.org/10.1002/tax.562013openalex-snapshot
Concordance trees, concordance factors, and the exploration of reticulate genealogy
inferredcites →https://doi.org/10.1007/978-3-030-10837-3_13openalex-snapshot
Advances in Computational Methods for Phylogenetic Networks in the Presence of Hybridization
inferredcites →https://doi.org/10.1007/978-3-0348-8948-3_8openalex-snapshot
Testing speciation models with DNA sequence data
inferredcites →https://doi.org/10.1007/bf01732751openalex-snapshot
Are evolutionary rates really variable?
inferredcites →https://doi.org/10.1007/bf02861577openalex-snapshot
Natural hybridization with particular reference to introgression
inferredcites →https://doi.org/10.1016/j.celrep.2013.09.042openalex-snapshot
Hybridization Reveals the Evolving Genomic Architecture of Speciation
inferredcites →https://doi.org/10.1016/j.cub.2021.10.052openalex-snapshot
Widespread introgression across a phylogeny of 155 Drosophila genomes
inferredcites →https://doi.org/10.1016/j.tpb.2008.10.004openalex-snapshot
Detecting hybrid speciation in the presence of incomplete lineage sorting using gene tree incongruence: A model
inferredcites →https://doi.org/10.1038/375313a0openalex-snapshot
Hybrid speciation accompanied by genomic reorganization in wild sunflowers
inferredcites →https://doi.org/10.1038/hdy.2009.151openalex-snapshot
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species
inferredcites →https://doi.org/10.1038/nature13408openalex-snapshot
Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA
inferredcites →https://doi.org/10.1038/ng.3199openalex-snapshot
Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing
inferredcites →https://doi.org/10.1038/ng.3617openalex-snapshot
Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism
inferredcites →https://doi.org/10.1038/ng.937openalex-snapshot
Bayesian inference of ancient human demography from individual genome sequences
inferredcites →https://doi.org/10.1038/nrg3936openalex-snapshot
Evidence for archaic adaptive introgression in humans
inferredcites →https://doi.org/10.1038/s41467-018-03294-wopenalex-snapshot
Genomic evidence of speciation reversal in ravens
inferredcites →https://doi.org/10.1038/s41559-018-0562-yopenalex-snapshot
Pervasive introgression facilitated domestication and adaptation in the Bos species complex
inferredcites →https://doi.org/10.1038/s41559-018-0777-yopenalex-snapshot
Insights from genomes into the evolutionary importance and prevalence of hybridization in nature
inferredcites →https://doi.org/10.1038/s41559-019-0881-7openalex-snapshot
Ancient admixture from an extinct ape lineage into bonobos
inferredcites →https://doi.org/10.1073/pnas.1407950111openalex-snapshot
Maximum likelihood inference of reticulate evolutionary histories
inferredcites →https://doi.org/10.1073/pnas.1706367114openalex-snapshot
Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti
inferredcites →https://doi.org/10.1073/pnas.76.10.5269openalex-snapshot
Mathematical model for studying genetic variation in terms of restriction endonucleases.
inferredcites →https://doi.org/10.1080/10635150117959openalex-snapshot
Bias in Phylogenetic Estimation and Its Relevance to the Choice between Parsimony and Likelihood Methods
inferredcites →https://doi.org/10.1086/600082openalex-snapshot
A Statistical Approach for Distinguishing Hybridization and Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/bioinformatics/btaa863openalex-snapshot
Assessing the fit of the multi-species network coalescent to multi-locus data
inferredcites →https://doi.org/10.1093/bioinformatics/btx048openalex-snapshot
admixturegraph: an R package for admixture graph manipulation and fitting
inferredcites →https://doi.org/10.1093/bioinformatics/btx155openalex-snapshot
IcyTree: rapid browser-based visualization for phylogenetic trees and networks
inferredcites →https://doi.org/10.1093/gbe/evaa053openalex-snapshot
Divergence-Based Introgression Polarization
inferredcites →https://doi.org/10.1093/gbe/evaa149openalex-snapshot
Biased Gene Retention in the Face of Introgression Obscures Species Relationships
inferredcites →https://doi.org/10.1093/genetics/105.2.437openalex-snapshot
EVOLUTIONARY RELATIONSHIP OF DNA SEQUENCES IN FINITE POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/158.2.885openalex-snapshot
Distinguishing Migration From Isolation: A Markov Chain Monte Carlo Approach
inferredcites →https://doi.org/10.1093/genetics/16.2.97openalex-snapshot
EVOLUTION IN MENDELIAN POPULATIONS
inferredcites →https://doi.org/10.1093/genetics/160.3.1217openalex-snapshot
A Model-Based Method for Identifying Species Hybrids Using Multilocus Genetic Data
inferredcites →https://doi.org/10.1093/genetics/164.2.747openalex-snapshot
Maximum-Likelihood Estimation of Admixture Proportions From Genetic Data
inferredcites →https://doi.org/10.1093/jhered/esu033openalex-snapshot
Hybridization, Introgression, and the Nature of Species Boundaries
inferredcites →https://doi.org/10.1093/molbev/msaa128openalex-snapshot
Evolution of the Insecticide Target Rdl in African Anopheles Is Driven by Interspecific and Interkaryotypic Introgression
inferredcites →https://doi.org/10.1093/molbev/msaa239openalex-snapshot
Signatures of Introgression across the Allele Frequency Spectrum
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/msn172openalex-snapshot
Subdivision in an Ancestral Species Creates Asymmetry in Gene Trees
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/msu269openalex-snapshot
Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci
inferredcites →https://doi.org/10.1093/molbev/msx235openalex-snapshot
PhyloNetworks: A Package for Phylogenetic Networks
inferredcites →https://doi.org/10.1093/molbev/msx307openalex-snapshot
Bayesian Inference of Species Networks from Multilocus Sequence Data
inferredcites →https://doi.org/10.1093/molbev/msy162openalex-snapshot
Phylogeny Estimation by Integration over Isolation with Migration Models
inferredcites →https://doi.org/10.1093/molbev/msz170openalex-snapshot
“Ghost Introgression” As a Cause of Deep Mitochondrial Divergence in a Bird Species Complex
inferredcites →https://doi.org/10.1093/molbev/msz178openalex-snapshot
A Three-Sample Test for Introgression
inferredcites →https://doi.org/10.1093/molbev/msz232openalex-snapshot
Asymmetric Distribution of Gene Trees Can Arise under Purifying Selection If Differences in Population Size Exist
inferredcites →https://doi.org/10.1093/molbev/msz296openalex-snapshot
A Bayesian Implementation of the Multispecies Coalescent Model with Introgression for Phylogenomic Analysis
inferredcites →https://doi.org/10.1093/nsr/nwab127openalex-snapshot
Multispecies coalescent and its applications to infer species phylogenies and cross-species gene flow
inferredcites →https://doi.org/10.1093/oso/9780195069174.003.0004openalex-snapshot
lntrogression and Its Consequences in Plants
inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a111268openalex-snapshot
Estimating the Frequencies of Genetically Distinct Classes of Individuals in Hybridized Populations
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004199openalex-snapshot
The Genealogy of a Sequence Subject to Purifying Selection at Multiple Sites
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025858openalex-snapshot
Inferring admixture proportions from molecular data
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025953openalex-snapshot
Measures of divergence between populations and the effect of forces that reduce variability
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026106openalex-snapshot
Genealogies and weak purifying selection
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040517openalex-snapshot
Relationships between gene trees and species trees.
inferredcites →https://doi.org/10.1093/sysbio/syaa052openalex-snapshot
Defining Species When There is Gene Flow
inferredcites →https://doi.org/10.1093/sysbio/syaa092openalex-snapshot
Comparative Performance of Popular Methods for Hybrid Detection using Genomic Data
inferredcites →https://doi.org/10.1093/sysbio/syac011openalex-snapshot
Ghost Lineages Highly Influence the Interpretation of Introgression Tests
inferredcites →https://doi.org/10.1093/sysbio/sys062openalex-snapshot
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
inferredcites →https://doi.org/10.1093/sysbio/syt032openalex-snapshot
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
inferredcites →https://doi.org/10.1093/sysbio/syv023openalex-snapshot
Detection and Polarization of Introgression in a Five-Taxon Phylogeny
inferredcites →https://doi.org/10.1093/sysbio/syw030openalex-snapshot
Inconsistency of Species Tree Methods under Gene Flow
inferredcites →https://doi.org/10.1093/sysbio/syw063openalex-snapshot
Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three Species
inferredcites →https://doi.org/10.1093/sysbio/syx063openalex-snapshot
Why Concatenation Fails Near the Anomaly Zone
inferredcites →https://doi.org/10.1093/sysbio/syx085openalex-snapshot
Coestimating Reticulate Phylogenies and Gene Trees from Multilocus Sequence Data
inferredcites →https://doi.org/10.1093/sysbio/syy020openalex-snapshot
The Effect of Gene Flow on Coalescent-based Species-Tree Inference
inferredcites →https://doi.org/10.1093/sysbio/syy023openalex-snapshot
HyDe: A Python Package for Genome-Scale Hybridization Detection
inferredcites →https://doi.org/10.1093/sysbio/syy034openalex-snapshot
Assessing the Impacts of Positive Selection on Coalescent-Based Species Tree Estimation and Species Delimitation
inferredcites →https://doi.org/10.1093/sysbio/syy040openalex-snapshot
Modeling Hybridization Under the Network Multispecies Coalescent
inferredcites →https://doi.org/10.1093/sysbio/syz056openalex-snapshot
Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data
inferredcites →https://doi.org/10.1098/rsbl.2017.0688openalex-snapshot
Adaptive introgression: a plant perspective
inferredcites →https://doi.org/10.1098/rstb.2011.0249openalex-snapshot
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice
inferredcites →https://doi.org/10.1101/2021.06.15.448399openalex-snapshot
15 years of introgression studies: quantifying gene flow across Eukaryotes
inferredcites →https://doi.org/10.1101/786038openalex-snapshot
Model-based assessments of differential introgression and linked natural selection during divergence and speciation
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1111/evo.12399openalex-snapshot
HOW COMMON IS HOMOPLOID HYBRID SPECIATION?
inferredcites →https://doi.org/10.1111/j.1558-5646.1983.tb05528.xopenalex-snapshot
TESTING THE CONSTANT-RATE NEUTRAL ALLELE MODEL WITH PROTEIN SEQUENCE DATA
inferredcites →https://doi.org/10.1111/mec.12415openalex-snapshot
Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation
inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow
inferredcites →https://doi.org/10.1111/mec.13390openalex-snapshot
The consequences of not accounting for background selection in demographic inference
inferredcites →https://doi.org/10.1111/mec.13610openalex-snapshot
Powerful methods for detecting introgressed regions from population genomic data
inferredcites →https://doi.org/10.1111/mec.14780openalex-snapshot
Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance
inferredcites →https://doi.org/10.1111/mec.14795openalex-snapshot
Detecting introgression despite phylogenetic uncertainty: The case of the South American siskins
inferredcites →https://doi.org/10.1111/mec.14851openalex-snapshot
Why phylogenomic uncertainty enhances introgression analyses
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.1258524openalex-snapshot
Extensive introgression in a malaria vector species complex revealed by phylogenomics
inferredcites →https://doi.org/10.1126/science.aaw2090openalex-snapshot
Genomic architecture and introgression shape a butterfly radiation
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110512-135840openalex-snapshot
Introgression of Crop Alleles into Wild or Weedy Populations
inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.593openalex-snapshot
The Role of Hybridization and Introgression in the Diversification of Animals
inferredcites →https://doi.org/10.1186/1471-2105-9-532openalex-snapshot
Extended Newick: it is time for a standard representation of phylogenetic networks
inferredcites →https://doi.org/10.1186/1471-2164-16-s10-s10openalex-snapshot
A maximum pseudo-likelihood approach for phylogenetic networks
inferredcites →https://doi.org/10.1186/s12859-016-1277-1openalex-snapshot
A scalability study of phylogenetic network inference methods using empirical datasets and simulations involving a single reticulation
inferredcites →https://doi.org/10.1186/s12859-017-2002-4openalex-snapshot
Gene flow analysis method, the D-statistic, is robust in a wide parameter space
inferredcites →https://doi.org/10.1186/s12859-019-2747-zopenalex-snapshot
Estimates of introgression as a function of pairwise distances
inferredcites →https://doi.org/10.1186/s12862-019-1439-7openalex-snapshot
An invariants-based method for efficient identification of hybrid species from large-scale genomic data
inferredcites →https://doi.org/10.1186/s13059-016-0889-0openalex-snapshot
Genome-wide introgression among distantly related Heliconius butterfly species
inferredcites →https://doi.org/10.1186/s40657-017-0088-zopenalex-snapshot
Avian introgression in the genomic era
inferredcites →https://doi.org/10.1214/aos/1176344136openalex-snapshot
Estimating the Dimension of a Model
inferredcites →https://doi.org/10.1371/journal.pbio.1002379openalex-snapshot
Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation
inferredcites →https://doi.org/10.1371/journal.pbio.2000234openalex-snapshot
Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence
inferredcites →https://doi.org/10.1371/journal.pbio.3000954openalex-snapshot
Primate phylogenomics uncovers multiple rapid radiations and ancient interspecific introgression
inferredcites →https://doi.org/10.1371/journal.pcbi.1005932openalex-snapshot
Bayesian inference of phylogenetic networks from bi-allelic genetic markers
inferredcites →https://doi.org/10.1371/journal.pgen.0020173openalex-snapshot
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1371/journal.pgen.1002660openalex-snapshot
The Probability of a Gene Tree Topology within a Phylogenetic Network with Applications to Hybridization Detection
inferredcites →https://doi.org/10.1371/journal.pgen.1004410openalex-snapshot
Speciation and Introgression between Mimulus nasutus and Mimulus guttatus
inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot
Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1371/journal.pgen.1006006openalex-snapshot
Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent
inferredcites →https://doi.org/10.1371/journal.pgen.1007341openalex-snapshot
Supervised machine learning reveals introgressed loci in the genomes of Drosophila simulans and D. sechellia
inferredcites →https://doi.org/10.1371/journal.pgen.1007526openalex-snapshot
Ancestral polymorphisms explain the role of chromosomal inversions in speciation
inferredcites →https://doi.org/10.1371/journal.pone.0118621openalex-snapshot
A New Method to Scan Genomes for Introgression in a Secondary Contact Model
inferredcites →https://doi.org/10.1534/genetics.105.049593openalex-snapshot
The Concordance of Gene Trees and Species Trees at Two Linked Loci
inferredcites →https://doi.org/10.1534/genetics.112.145037openalex-snapshot
Ancient Admixture in Human History
inferredcites →https://doi.org/10.1534/genetics.114.162396openalex-snapshot
Neandertal Admixture in Eurasia Confirmed by Maximum-Likelihood Analysis of Three Genomes
inferredcites →https://doi.org/10.1534/genetics.115.183913openalex-snapshot
Admixture, Population Structure, and F -Statistics
inferredcites →https://doi.org/10.1534/genetics.118.301831openalex-snapshot
The Timing and Direction of Introgression Under the Multispecies Network Coalescent
inferredcites →https://doi.org/10.1534/genetics.119.302623openalex-snapshot
Molecular Population Genetics
inferredcites →https://doi.org/10.2307/3802723openalex-snapshot
Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Range-wide mitochondrial phylogeography of Sorex monticola: evolutionarily distinct clades occupy divergent abiotic niches
inferred← citeshttps://doi.org/10.1002/ajb2.16118openalex-snapshot
Testing hypotheses of hybrid taxon formation in the shrubby beardtongues (Penstemon subgenus Dasanthera)
inferred← citeshttps://doi.org/10.1002/ajb2.16162openalex-snapshot
The role of geography, ecology, and hybridization in the evolutionary history of Canary Island Descurainia
inferred← citeshttps://doi.org/10.1002/ajb2.16242openalex-snapshot
Introgression and persistence of cultivar alleles in wild carrot (Daucus carota) populations in the United States
inferred← citeshttps://doi.org/10.1002/ajb2.70078openalex-snapshot
The unique morphological basis and repeated evolutionary origins of personate flowers in Penstemon
inferred← citeshttps://doi.org/10.1002/ajb2.70213openalex-snapshot
Evidence of introgression amid phylogenetic conflict in Brachyotum , a plant radiation from the Tropical Andes
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A roadmap of phylogenomic methods for studying polyploid plant genera
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Detecting cryptic ghost lineage introgression in four‐taxon genomic datasets
inferred← citeshttps://doi.org/10.1002/aps3.70061openalex-snapshot
Detecting introgression from phylogenetic invariant site patterns using machine learning
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Extensive introgression among strongylocentrotid sea urchins revealed by phylogenomics
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Unidirectional Mitochondrial Introgression Despite Limited Nuclear Admixture in North American Red‐Backed Voles, Clethrionomys rutilus and C. gapperi
inferred← citeshttps://doi.org/10.1002/ece3.9673openalex-snapshot
Pollinator and host sharing lead to hybridization and introgression in Panamanian free‐standing figs, but not in their pollinator wasps
inferred← citeshttps://doi.org/10.1002/evl3.256openalex-snapshot
The dynamics of introgression across an avian radiation
inferred← citeshttps://doi.org/10.1002/evl3.294openalex-snapshot
A need for standardized reporting of introgression: Insights from studies across eukaryotes
inferred← citeshttps://doi.org/10.1002/ppp3.70204openalex-snapshot
Waves of range dynamics and gene flow characterize the biogeographic history of Litsea elongata , a dominant tree in East Asian evergreen broadleaved forests
inferred← citeshttps://doi.org/10.1002/tax.13308openalex-snapshot
Target capture sequencing clarifies key relationships in the Eriostemon group (Rutaceae: Zanthoxyloideae) and supports a reclassification of Philotheca, including the recognition of two new genera
inferred← citeshttps://doi.org/10.1002/tax.70120openalex-snapshot
Phylogenomics reveals widespread ancient hybridization in the evolution of Lychnophorinae (Vernonieae, Asteraceae)
inferred← citeshttps://doi.org/10.1002/wsb.1625openalex-snapshot
The role of management decisions in subspecies hybridization across wild turkey occupied range
inferred← citeshttps://doi.org/10.1007/978-3-031-34854-9_5openalex-snapshot
Population Differentiation with Introgression
inferred← citeshttps://doi.org/10.1007/s00239-026-10321-8openalex-snapshot
When Complex Models Fit the Wrong Mechanistic Complexity in Phylogenomic Analysis
inferred← citeshttps://doi.org/10.1007/s00285-022-01838-9openalex-snapshot
The tree of blobs of a species network: identifiability under the coalescent
inferred← citeshttps://doi.org/10.1007/s10336-023-02080-wopenalex-snapshot
How common is hybridization in birds?
inferred← citeshttps://doi.org/10.1016/j.cub.2021.10.052openalex-snapshot
Widespread introgression across a phylogeny of 155 Drosophila genomes
inferred← citeshttps://doi.org/10.1016/j.fgb.2023.103858openalex-snapshot
Sequence capture identifies fastidious chytrid fungi directly from host tissue
inferred← citeshttps://doi.org/10.1016/j.gecco.2025.e03739openalex-snapshot
Diversify first! Fatten the tails of phenotypic diversity to enhance adaptive capacity in the Anthropocene
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Utilizing resequencing big data to facilitate Brassica vegetable breeding: tracing introgression pedigree and developing highly specific markers for clubroot resistance
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Phylogenetic relationships and divergence times of Odonata inferred from mitochondrial genome
inferred← citeshttps://doi.org/10.1016/j.pld.2024.04.004openalex-snapshot
Comparative analysis shows high level of lineage sorting in genomic regions with low recombination in the extended Picea likiangensis species complex
inferred← citeshttps://doi.org/10.1016/j.tig.2025.07.001openalex-snapshot
Decoding genomic landscapes of introgression
inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100482openalex-snapshot
Karyotypic stasis and swarming influenced the evolution of viral tolerance in a species-rich bat radiation
inferred← citeshttps://doi.org/10.1016/j.xplc.2023.100599openalex-snapshot
Genomics of plant speciation
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107617openalex-snapshot
Phylogenomics reveals extensive introgression and a case of mito-nuclear discordance in the killifish genus Kryptolebias
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107682openalex-snapshot
Gene flow assessment helps to distinguish strong genomic structure from speciation in an Iberian ant-eating spider
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107883openalex-snapshot
A complete species-level phylogeny of the Erythrura parrotfinches (Aves: Estrildidae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108057openalex-snapshot
Traditional multilocus phylogeny fails to fully resolve Palearctic ground squirrels (Spermophilus) relationships but reveals a new species endemic to West Siberia
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108112openalex-snapshot
Phylogenomic analyses revealed widely occurring hybridization events across Elsholtzieae (Lamiaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108131openalex-snapshot
Complex patterns of gene flow and convergence in the evolutionary history of the spiral-horned antelopes (Tragelaphini)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108136openalex-snapshot
Incomplete lineage sorting and hybridization underlie tree discordance in Petunia and related genera (Petunieae, Solanaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108167openalex-snapshot
A consequential one-night stand: Episodic historical hybridization leads to mitochondrial takeover in sympatric desert ant-eating spiders
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108181openalex-snapshot
Machine learning can be as good as maximum likelihood when reconstructing phylogenetic trees and determining the best evolutionary model on four taxon alignments
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108185openalex-snapshot
A molecular phylogeny of the Petaluridae (Odonata: Anisoptera): A 160-Million-Year-Old story of drift and extinction
inferred← citeshttps://doi.org/10.1016/j.ympev.2024.108222openalex-snapshot
Whole genome data confirm pervasive gene discordance in the evolutionary history of Coenonympha (Nymphalidae) butterflies
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108309openalex-snapshot
Disentangling a genome-wide mosaic of conflicting phylogenetic signals in Western Rattlesnakes
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108437openalex-snapshot
Reticulate evolution in terrestrial snails of Euhadra peliomphala species complex
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108459openalex-snapshot
Untangling intergeneric mito-nuclear discordance: evidence for ancient introgression in two vole genera, Clethrionomys and Alticola (Rodentia, Cricetidae)
inferred← citeshttps://doi.org/10.1038/s41437-023-00654-1openalex-snapshot
The puzzle of plant hybridisation: a high propensity to hybridise but few hybrid zones reported
inferred← citeshttps://doi.org/10.1038/s41437-025-00760-2openalex-snapshot
triangulaR: an R package for identifying AIMs and building triangle plots using SNP data from hybrid zones
inferred← citeshttps://doi.org/10.1038/s41467-023-38714-zopenalex-snapshot
Independent rediploidization masks shared whole genome duplication in the sturgeon-paddlefish ancestor
inferred← citeshttps://doi.org/10.1038/s41576-023-00620-xopenalex-snapshot
Incongruence in the phylogenomics era
inferred← citeshttps://doi.org/10.1038/s41576-026-00995-7openalex-snapshot
Genetics and genomics of hybridization
inferred← citeshttps://doi.org/10.1038/s41586-025-09740-2openalex-snapshot
An ancient recombination desert is a speciation supergene in placental mammals
inferred← citeshttps://doi.org/10.1038/s41586-026-11007-3openalex-snapshot
Reference genomes and fossils revise bat family phylogeny and biogeography
inferred← citeshttps://doi.org/10.1038/s41598-023-34059-1openalex-snapshot
Mito-nuclear discordance within Anthozoa, with notes on unique properties of their mitochondrial genomes
inferred← citeshttps://doi.org/10.1038/s41598-024-51421-zopenalex-snapshot
Multiple contact zones and karyotypic evolution in a neotropical frog species complex
inferred← citeshttps://doi.org/10.1038/s41598-024-60215-2openalex-snapshot
Phylogenomics of Psammodynastes and Buhoma (Elapoidea: Serpentes), with the description of a new Asian snake family
inferred← citeshttps://doi.org/10.1038/s41598-024-79584-9openalex-snapshot
Historical and ongoing hybridisation in Southern South American grassland species
inferred← citeshttps://doi.org/10.1038/s41598-025-16399-2openalex-snapshot
Identifying sets of phylogenetically informative markers for Anastrepha (Diptera: Tephritidae)
inferred← citeshttps://doi.org/10.1071/sb24011openalex-snapshot
Navigating phylogenetic conflict and evolutionary inference in plants with target-capture data
inferred← citeshttps://doi.org/10.1073/pnas.2310708120openalex-snapshot
Efficient Bayesian inference under the multispecies coalescent with migration
inferred← citeshttps://doi.org/10.1073/pnas.2410943122openalex-snapshot
A trans-species cytoplasmic polymorphism is associated with seed shape and aridity across multiple species of sunflowers
inferred← citeshttps://doi.org/10.1080/01584197.2025.2595502openalex-snapshot
On the rarity of ratite hybridization
inferred← citeshttps://doi.org/10.1080/24701394.2026.2725715openalex-snapshot
Complete mitogenome of Plagiognathops microlepis and its phylogenetic position within the subfamily Xenocyprinae (Cypriniformes: Cyprinidae)
inferred← citeshttps://doi.org/10.1093/aob/mcad047openalex-snapshot
Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae)
inferred← citeshttps://doi.org/10.1093/aob/mcad153openalex-snapshot
Unravelling phylogenetic relationships of the tribe Cereeae using target enrichment sequencing
inferred← citeshttps://doi.org/10.1093/aob/mcae170openalex-snapshot
Inferring complex evolutionary history of the closely related East Asian wild roses in Rosa sect. Synstylae (Rosaceae) based on genomic evidence from conserved orthologues
inferred← citeshttps://doi.org/10.1093/bib/bbae516openalex-snapshot
Reconstructing tumor clonal heterogeneity and evolutionary relationships based on tumor DNA sequencing data
inferred← citeshttps://doi.org/10.1093/bioinformatics/btae642openalex-snapshot
Detection and quantification of introgression using Bayesian inference based on conjugate priors
inferred← citeshttps://doi.org/10.1093/bioinformatics/btag354openalex-snapshot
KCFtools: rapid alignment-free method for introgression screening and GWAS using k -mer profiles
inferred← citeshttps://doi.org/10.1093/evlett/qrae035openalex-snapshot
Genomic patterns in the dwarf kingfishers of northern Melanesia reveal a mechanistic framework explaining the paradox of the great speciators
inferred← citeshttps://doi.org/10.1093/evolut/qpaf036openalex-snapshot
Steps toward a unified “evolutionary genomics”
inferred← citeshttps://doi.org/10.1093/evolut/qpaf201openalex-snapshot
Reconsidering cytonuclear discordance in the genomic age
inferred← citeshttps://doi.org/10.1093/g3journal/jkae299openalex-snapshot
The hybrid history of zebrafish
inferred← citeshttps://doi.org/10.1093/gbe/evaf081openalex-snapshot
Genome-Wide Demographic Analyses of Balaenid Whales Revealed Complex History of Gene Flow Associated with Past Climate Oscillation
inferred← citeshttps://doi.org/10.1093/gbe/evag202openalex-snapshot
Phylotranscriptomics Allows Distinguishing Major Gene Flow Events from Incomplete Lineage Sorting in Rapidly Diversifying Mimetic Orchids (Genus Ophrys )
inferred← citeshttps://doi.org/10.1093/genetics/iyae089openalex-snapshot
Selection leads to false inferences of introgression using popular methods
inferred← citeshttps://doi.org/10.1093/genetics/iyae155openalex-snapshot
Admixture in the fungal pathogen Blastomyces
inferred← citeshttps://doi.org/10.1093/genetics/iyae157openalex-snapshot
Genealogical asymmetry under the IM model and a two-taxon test for gene flow
inferred← citeshttps://doi.org/10.1093/hr/uhae330openalex-snapshot
Phytop: a tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL
inferred← citeshttps://doi.org/10.1093/jhered/esac005openalex-snapshot
Avian Introgression Patterns are Consistent With Haldane’s Rule
inferred← citeshttps://doi.org/10.1093/jhered/esad074openalex-snapshot
The de novo genome of the Black-necked Snakefly ( Venustoraphidia nigricollis Albarda, 1891): A resource to study the evolution of living fossils
inferred← citeshttps://doi.org/10.1093/jmammal/gyae126openalex-snapshot
Challenges in the Vespertilionidae phylogeny: resolving Pipistrellus nathusii placement and affirming generic status for Asian pipistrelles
inferred← citeshttps://doi.org/10.1093/molbev/msac083openalex-snapshot
Estimation of Cross-Species Introgression Rates Using Genomic Data Despite Model Unidentifiability
inferred← citeshttps://doi.org/10.1093/molbev/msac237openalex-snapshot
Inference of Gene Flow between Species under Misspecified Models
inferred← citeshttps://doi.org/10.1093/molbev/msac278openalex-snapshot
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats
inferred← citeshttps://doi.org/10.1093/molbev/msad013openalex-snapshot
Re-evaluating Homoploid Reticulate Evolution in Helianthus Sunflowers
inferred← citeshttps://doi.org/10.1093/molbev/msad178openalex-snapshot
Inferring the Direction of Introgression Using Genomic Sequence Data
inferred← citeshttps://doi.org/10.1093/molbev/msad252openalex-snapshot
Temporal Variation in Introgressed Segments’ Length Statistics Computed from a Limited Number of Ancient Genomes Sheds Light on Past Admixture Pulses
inferred← citeshttps://doi.org/10.1093/molbev/msad255openalex-snapshot
Extensive Phylogenomic Discordance and the Complex Evolutionary History of the Neotropical Cat Genus Leopardus
inferred← citeshttps://doi.org/10.1093/molbev/msae250openalex-snapshot
Saltational Episodes of Reticulate Evolution in the Drosophila saltans Species Group
inferred← citeshttps://doi.org/10.1093/molbev/msaf107openalex-snapshot
Multiple Horizontal Transfers of Immune Genes Between Distantly Related Teleost Fishes
inferred← citeshttps://doi.org/10.1093/molbev/msaf121openalex-snapshot
Inference of Gene Flow between Species from Genomic Data When the Mode, Direction, and Lineages are Misspecified
inferred← citeshttps://doi.org/10.1093/molbev/msaf216openalex-snapshot
Detecting Introgression in Shallow Phylogenies: How Minor Molecular Clock Deviations Lead to Major Inference Errors
inferred← citeshttps://doi.org/10.1093/molbev/msaf269openalex-snapshot
Timing and Pattern of Early Diversification in Drosophilidae (Diptera)
inferred← citeshttps://doi.org/10.1093/molbev/msaf327openalex-snapshot
On the robustness of Bayesian inference of gene flow to intragenic recombination and natural selection
inferred← citeshttps://doi.org/10.1093/molbev/msag086openalex-snapshot
Deep learning reveals genomic regions introgressed between two recurrently hybridizing lynx species
inferred← citeshttps://doi.org/10.1093/molbev/msag155openalex-snapshot
Phylogenomic blind spots: the limits of UCE and BUSCO loci in the presence of gene flow
inferred← citeshttps://doi.org/10.1093/sysbio/syab063openalex-snapshot
Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies
inferred← citeshttps://doi.org/10.1093/sysbio/syac011openalex-snapshot
Ghost Lineages Highly Influence the Interpretation of Introgression Tests
inferred← citeshttps://doi.org/10.1093/sysbio/syac047openalex-snapshot
Impact of Ghost Introgression on Coalescent-Based Species Tree Inference and Estimation of Divergence Time
inferred← citeshttps://doi.org/10.1093/sysbio/syac078openalex-snapshot
Phylogenomics Reveals that Mitochondrial Capture and Nuclear Introgression Characterize Skua Species Proposed to be of Hybrid Origin
inferred← citeshttps://doi.org/10.1093/sysbio/syad033openalex-snapshot
Inferring Historical Introgression with Deep Learning
inferred← citeshttps://doi.org/10.1093/sysbio/syad062openalex-snapshot
Introgression Underlies Phylogenetic Uncertainty But Not Parallel Plumage Evolution in a Recent Songbird Radiation
inferred← citeshttps://doi.org/10.1093/sysbio/syad077openalex-snapshot
Detection of Ghost Introgression Requires Exploiting Topological and Branch Length Information
inferred← citeshttps://doi.org/10.1093/sysbio/syad078openalex-snapshot
Phylogenetic Conflict Between Species Tree and Maternally Inherited Gene Trees in a Clade of Emberiza Buntings (Aves: Emberizidae)
inferred← citeshttps://doi.org/10.1093/sysbio/syae016openalex-snapshot
Museum Skins Enable Identification of Introgression Associated with Cytonuclear Discordance
inferred← citeshttps://doi.org/10.1093/sysbio/syae028openalex-snapshot
Towards Reliable Detection of Introgression in the Presence of Among-Species Rate Variation
inferred← citeshttps://doi.org/10.1093/sysbio/syae036openalex-snapshot
Whole Genomes Reveal Evolutionary Relationships and Mechanisms Underlying Gene-Tree Discordance in Neodiprion Sawflies
inferred← citeshttps://doi.org/10.1093/sysbio/syae040openalex-snapshot
Understanding Species Boundaries that Arise from Complex Histories: Gene Flow Across the Speciation Continuum in the Spotted Whiptail Lizards
inferred← citeshttps://doi.org/10.1093/sysbio/syae050openalex-snapshot
Hierarchical Heuristic Species Delimitation Under the Multispecies Coalescent Model with Migration
inferred← citeshttps://doi.org/10.1093/sysbio/syaf016openalex-snapshot
Phylogenomics of Marine Angelfishes: Diagnosing Sources of Systematic Discordance for an Iconic Reef Fish Family (F: Pomacanthidae)
inferred← citeshttps://doi.org/10.1093/sysbio/syaf019openalex-snapshot
Inference of Cross-Species Gene Flow Using Genomic Data Depends on the Methods: Case Study of Gene Flow in Drosophila
inferred← citeshttps://doi.org/10.1093/sysbio/syaf021openalex-snapshot
Massive Inter-species Introgression Overwhelms Phylogenomic Relationships Among Jaguar, Lion, and Leopard
inferred← citeshttps://doi.org/10.1093/sysbio/syaf033openalex-snapshot
Introgression across Narrow Contact Zones Shapes the Genomic Landscape of Phylogenetic Variation in an African Bird Clade
inferred← citeshttps://doi.org/10.1093/sysbio/syaf066openalex-snapshot
Introgressed Variants Obscure Phylogenetic Relationships but Are Not Subject to Positive Selection in Australasian Long-Tailed Parrots
inferred← citeshttps://doi.org/10.1093/sysbio/syaf069openalex-snapshot
Nuclear Phylogenomic Insights into Relationships, Support, and Conflict Among the Early Diverging Lineages of the Megadiverse Epidendroid Orchids
inferred← citeshttps://doi.org/10.1093/sysbio/syaf085openalex-snapshot
Population Size Differences Can Lead to Biases in Phylogenetic Inference and Introgression Detection in the Presence of Purifying Selection
inferred← citeshttps://doi.org/10.1093/sysbio/syag006openalex-snapshot
Using Phylogenetic Network Methods for Genomic Data Exploration and Hypothesis Generation Fails to Untangle a Confusing History of Hybridization in New Zealand Cicadas
inferred← citeshttps://doi.org/10.1093/sysbio/syag012openalex-snapshot
Synergizing Bayesian and Heuristic Approaches: D-BPP Uncovers Ghost Introgression in Panthera and Thuja
inferred← citeshttps://doi.org/10.1093/sysbio/syag028openalex-snapshot
Bayesian Test of Gene Flow between Sister Lineages Using Genomic Data
inferred← citeshttps://doi.org/10.1093/sysbio/syag045openalex-snapshot
Evolving View on Phylogenetic Networks
inferred← citeshttps://doi.org/10.1098/rsbl.2025.0444openalex-snapshot
Do syngameons exist in tropical trees? Challenges to determine their existence and estimate their frequency
inferred← citeshttps://doi.org/10.1101/2021.06.15.448399openalex-snapshot
15 years of introgression studies: quantifying gene flow across Eukaryotes
inferred← citeshttps://doi.org/10.1101/2022.04.15.488502openalex-snapshot
Phylogenomic patterns of divergence and gene flow detail the evolution of reinforcement and hybrid speciation in Phlox wildflowers
inferred← citeshttps://doi.org/10.1101/2022.06.21.496980openalex-snapshot
A Phylogenomic Assessment of Processes Underpinning Convergent Evolution in Open-Habitat Chats
inferred← citeshttps://doi.org/10.1101/2022.10.14.512273openalex-snapshot
Re-evaluating homoploid reticulate evolution in the annual sunflowers
inferred← citeshttps://doi.org/10.1101/2023.05.21.541635openalex-snapshot
Towards reliable detection of introgression in the presence of among-species rate variation
inferred← citeshttps://doi.org/10.1101/2023.12.07.570590openalex-snapshot
Phylogenomics reveals an almost perfect polytomy among the almost ungulates ( Paenungulata )
inferred← citeshttps://doi.org/10.1101/2024.03.28.587167openalex-snapshot
triangulaR: an R package for identifying AIMs and building triangle plots using SNP data from hybrid zones
inferred← citeshttps://doi.org/10.1101/2024.05.13.593926openalex-snapshot
Inference of continuous gene flow between species under misspecified models
inferred← citeshttps://doi.org/10.1101/2024.07.01.601622openalex-snapshot
Phenotypically wild barley shows evidence of introgression from cultivated barley
inferred← citeshttps://doi.org/10.1101/2024.11.07.622462openalex-snapshot
Investigating the Role of Management Decisions in Subspecies Hybridization Across the Wild Turkey’s Range
inferred← citeshttps://doi.org/10.1101/2025.01.17.633659openalex-snapshot
The reasonable effectiveness of domain adaptation for inference of introgression
inferred← citeshttps://doi.org/10.1101/2025.08.21.671585openalex-snapshot
GhostParser: A highly scalable phylogenomic approach for the identification of ghost introgression
inferred← citeshttps://doi.org/10.1101/2025.09.10.675447openalex-snapshot
Reciprocal exchange obscures phylogenetic patterns of introgression
inferred← citeshttps://doi.org/10.1101/2025.09.15.676213openalex-snapshot
Peripheries in alpine phylogeography
inferred← citeshttps://doi.org/10.1101/2025.09.22.677938openalex-snapshot
Diversification and coexistence amid widespread and persistent gene flow in Andean trees
inferred← citeshttps://doi.org/10.1101/2025.10.16.682823openalex-snapshot
Evolutionary history, ecological divergence, and introgression in the Oncocyclus irises species complex in the Southern Levant
inferred← citeshttps://doi.org/10.1111/1755-0998.70161openalex-snapshot
Combining Annotation Software to Identify Orthologous Genes ( CASIO ) Provides a New Dataset of Orthologous Genes for Swallowtail Butterflies
inferred← citeshttps://doi.org/10.1111/2041-210x.14116openalex-snapshot
SiPhyNetwork : An R package for simulating phylogenetic networks
inferred← citeshttps://doi.org/10.1111/ede.12467openalex-snapshot
A plurality of morphological characters need not equate with phylogenetic accuracy: A rare genomic change refutes the placement of Solifugae and Pseudoscorpiones in Haplocnemata
inferred← citeshttps://doi.org/10.1111/ele.14359openalex-snapshot
A phylogenomic perspective on interspecific competition
inferred← citeshttps://doi.org/10.1111/eva.13223openalex-snapshot
The genic view of hybridization in the Anthropocene
inferred← citeshttps://doi.org/10.1111/eva.13736openalex-snapshot
Conservation genomics assessment of Tharp's bluestar (Amsonia tharpii) with comparisons to widespread (A. longilora) and narrowly endemic (A. fugatei) congeners
inferred← citeshttps://doi.org/10.1111/evo.14484openalex-snapshot
Phylogenomic analysis does not support a classic but controversial hypothesis of progenitor‐derivative origins for the serpentine endemic Clarkia franciscana
inferred← citeshttps://doi.org/10.1111/faf.12794openalex-snapshot
Hidden in the ocean: The importance of detecting hybridisation in pelagic and deep‐water fishes
inferred← citeshttps://doi.org/10.1111/jbi.70125openalex-snapshot
The Role of Peripheral Regions in Shaping the Phylogeography of the Bear's Ear Complex Across the Alps
inferred← citeshttps://doi.org/10.1111/jpy.13281openalex-snapshot
Phylotranscriptomics reveals the reticulate evolutionary history of a widespread diatom species complex
inferred← citeshttps://doi.org/10.1111/jse.13138openalex-snapshot
Phylogenomic insights into species relationships, reticulate evolution, and biogeographic diversification of the ginseng genus Panax (Araliaceae), with an emphasis on the diversification in the Himalayan‐Hengduan Mountains
inferred← citeshttps://doi.org/10.1111/jse.70013openalex-snapshot
A cautionary note on using STRUCTURE to detect hybridization in a phylogenetic context
inferred← citeshttps://doi.org/10.1111/jse.70102openalex-snapshot
From genomes to graphs: Why macroevolution still matters in the pangenome era
inferred← citeshttps://doi.org/10.1111/mec.16636openalex-snapshot
Variable hybridization between two Lake Tanganyikan cichlid species in recent secondary contact
inferred← citeshttps://doi.org/10.1111/mec.17080openalex-snapshot
Mitonuclear discordance results from incomplete lineage sorting, with no detectable evidence for gene flow, in a rapid radiation of Todiramphus kingfishers
inferred← citeshttps://doi.org/10.1111/mec.17167openalex-snapshot
Demography‐driven and adaptive introgression in a hybrid zone of the Armeria syngameon
inferred← citeshttps://doi.org/10.1111/mec.17169openalex-snapshot
Genomic divergence and introgression between cryptic species of a widespread North American songbird
inferred← citeshttps://doi.org/10.1111/mec.17216openalex-snapshot
Genomic landscape of introgression from the ghost lineage in a gobiid fish uncovers the generality of forces shaping hybrid genomes
inferred← citeshttps://doi.org/10.1111/mec.17569openalex-snapshot
Contrast and Genomic Characterisation of Ancient and Recent Interspecific Introgression Between Deeply Diverged Moustache Toads (Leptobrachium)
inferred← citeshttps://doi.org/10.1111/mec.17615openalex-snapshot
Ancient Hybridisation Fuelled Diversification in Acropora Corals
inferred← citeshttps://doi.org/10.1111/mec.17766openalex-snapshot
Repeated Mitochondrial Capture With Limited Genomic Introgression in a Lizard Group
inferred← citeshttps://doi.org/10.1111/mec.17778openalex-snapshot
Disentangling Complex Histories of Hybridisation: The Genomic Consequences of Ancient and Recent Introgression in Channel Island Monkeyflowers
inferred← citeshttps://doi.org/10.1111/mec.70018openalex-snapshot
Reticulate and Hybrid Speciation is Promoted by Environmental Instability in an Indo‐Pacific Species Complex of Whistlers (Aves: Pachycephala )
inferred← citeshttps://doi.org/10.1111/mec.70130openalex-snapshot
Ancient Introgression Explains Mitochondrial Genome Capture and Mitonuclear Discordance Among South American Collared Tropidurus Lizards
inferred← citeshttps://doi.org/10.1111/mec.70179openalex-snapshot
Pliocene Forest Fragmentation Shaped Speciation in Tropical Asia's Giant Squirrels ( Ratufa )
inferred← citeshttps://doi.org/10.1111/mec.70501openalex-snapshot
Combined Effects of Isolation by Distance, Ecology and Resistance on Population Genetic Divergence in Rana kukunoris From Qinghai‐Tibetan Plateau
inferred← citeshttps://doi.org/10.1111/mec.70537openalex-snapshot
Phylogenetically Diverse Introgression Drives Subtle Population Structure in Pacific Rockfishes
inferred← citeshttps://doi.org/10.1111/nph.18525openalex-snapshot
Whole‐genome analyses disentangle reticulate evolution of primroses in a biodiversity hotspot
inferred← citeshttps://doi.org/10.1111/nph.19802openalex-snapshot
Phylogenomic analyses re‐examine the evolution of reinforcement and hypothesized hybrid speciation in Phlox wildflowers
inferred← citeshttps://doi.org/10.1111/nph.20187openalex-snapshot
Prezygotic barriers effectively limit hybridization in a rapid evolutionary radiation
inferred← citeshttps://doi.org/10.1111/syen.12686openalex-snapshot
Extensive hybridisation and complex evolutionary history in the leafhopper genus Agnesiella (Hemiptera: Cicadellidae: Typhlocybinae)
inferred← citeshttps://doi.org/10.1111/tpj.16142openalex-snapshot
Deep reticulation: the long legacy of hybridization in vascular plant evolution
inferred← citeshttps://doi.org/10.1111/tpj.16859openalex-snapshot
Uncovering ghost introgression through genomic analysis of a distinct eastern Asian hickory species
inferred← citeshttps://doi.org/10.1111/tpj.70777openalex-snapshot
Scaling up orphan crop research: genebank genetics highlight geographic structure in cultivated cowpea from 10 617 global accessions
inferred← citeshttps://doi.org/10.1126/science.aef8874openalex-snapshot
Recovering signatures of archaic hominin introgression using ancestral recombination graphs
inferred← citeshttps://doi.org/10.1128/mbio.02133-24openalex-snapshot
Characterization of genome-wide phylogenetic conflict uncovers evolutionary modes of carnivorous fungi
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102723-055311openalex-snapshot
A Genomic Perspective on Species Delimitation
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102723-064507openalex-snapshot
Inferring Admixture in Genomes
inferred← citeshttps://doi.org/10.1146/annurev-genet-021821-020805openalex-snapshot
Prevalence and Adaptive Impact of Introgression
inferred← citeshttps://doi.org/10.1186/s12870-025-06963-3openalex-snapshot
Teasing apart the sources of phylogenetic tree discordance across three genomes in the oak family (Fagaceae)
inferred← citeshttps://doi.org/10.1186/s12915-023-01579-1openalex-snapshot
The genome of the pygmy right whale illuminates the evolution of rorquals
inferred← citeshttps://doi.org/10.1186/s12915-025-02204-zopenalex-snapshot
Incomplete lineage sorting and introgression among genera and species of Liliaceae tribe Tulipeae: insights from phylogenomics
inferred← citeshttps://doi.org/10.1186/s40529-025-00482-yopenalex-snapshot
Impact of incomplete lineage sorting and natural selection on the phylogenetic and taxonomic uncertainties of Aspidistra in Taiwan
inferred← citeshttps://doi.org/10.1360/ssv-2026-0158openalex-snapshot
Advances and prospects in the ecological genomics of forest trees and its applications
inferred← citeshttps://doi.org/10.1371/journal.pbio.3001776openalex-snapshot
Ghost lineages can invalidate or even reverse findings regarding gene flow
inferred← citeshttps://doi.org/10.1371/journal.pbio.3002632openalex-snapshot
The promise and pitfalls of synteny in phylogenomics
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010657openalex-snapshot
IntroUNET: Identifying introgressed alleles via semantic segmentation
inferred← citeshttps://doi.org/10.1371/journal.pgen.1010836openalex-snapshot
TRAILS: Tree reconstruction of ancestry using incomplete lineage sorting
inferred← citeshttps://doi.org/10.1371/journal.pntd.0013414openalex-snapshot
Population genomics of Aedes albopictus across remote Pacific islands for genetic biocontrol considerations
inferred← citeshttps://doi.org/10.18061/bssb.v2i2.9255openalex-snapshot
Perspectives on the Grey Zone of Species Delimitation With Notes on Invertebrates in the Marine Environment
inferred← citeshttps://doi.org/10.18061/bssb.v2i3.9285openalex-snapshot
Exploring the Distribution of Phylogenetic Networks Generated Under a Birth-Death-Hybridization Process
inferred← citeshttps://doi.org/10.21248/gups.75018openalex-snapshot
The application of baleen whale genomes in conservation and evolutionary research
inferred← citeshttps://doi.org/10.2139/ssrn.5201854openalex-snapshot
Untangling Intergeneric Mito-Nuclear Discordance: Evidence for Ancient Introgression in Two Vole Genera, Clethrionomys and Alticola (Rodentia, Cricetidae)
inferred← citeshttps://doi.org/10.24072/pci.evolbiol.100139openalex-snapshot
Reticulated evolution marks the rapid diversification of the Delphinoidae
inferred← citeshttps://doi.org/10.24072/pcjournal.359openalex-snapshot
An approximate likelihood method reveals ancient gene flow between human, chimpanzee and gorilla
inferred← citeshttps://doi.org/10.32942/x21w31openalex-snapshot
Incomplete lineage sorting and hybridization as drivers of tree discordance in Petunia and related genera (Petunieae, Solanaceae)
inferred← citeshttps://doi.org/10.32942/x24w2kopenalex-snapshot
BPGA: an interactive Shiny application for basic population genetic analysis of genotype data
inferred← citeshttps://doi.org/10.3389/fevo.2023.1215319openalex-snapshot
Transcriptome-based phylogenomic analysis reveals evidence of ancient hybridization events in the Mepraia genus (Hemiptera: Reduviidae: Triatominae)
inferred← citeshttps://doi.org/10.3389/fevo.2024.1243221openalex-snapshot
Incomplete lineage sorting and long-branch attraction confound phylogenomic inference of Pancrustacea
inferred← citeshttps://doi.org/10.3390/ani15131891openalex-snapshot
The Nariño Cat, the Tigrinas and Their Problematic Systematics and Phylogeography: The Real Story
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