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High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous CiliateCarchesium polypinumin the Grand River Basin (North America)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Complete sequence of the mitochondrial genome of Tetrahymena pyriformis and comparison with Paramecium aurelia mitochondrial DNA

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Cryptic Species in a “Living Fossil” Lineage: Taxonomic and Phylogenetic Relationships within the GenusLepidurus(Crustacea: Notostraca) in North America

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The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature

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Impact of scoring error and reproducibility RAPD data on RAPD based estimates of genetic distance

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Ciliate evolution: The ribosomal phylogenies of the tetrahymenine ciliates

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The Internal Transcribed Spacer 2 Exhibits a Common Secondary Structure in Green Algae and Flowering Plants

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Fast and Accurate Identification of European Species of the Paramecium aurelia Complex by RAPD-Fingerprints

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Distribution and diversity of aquatic protists: an evolutionary and ecological perspective

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Diversity and geographic distribution of ciliates (Protista: Ciliophora)

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Taxonomic Confusion Blurs the Debate on Cosmopolitanism versus Local Endemism of Free-Living Protists

inferredcites →https://doi.org/10.1016/j.protis.2006.05.012openalex-snapshot

Multiple Cosmopolitan Ecotypes within a Microbial Eukaryote Morphospecies

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Reproductive Isolation among Sympatric Cryptic Species in Marine Diatoms

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DNA barcoding: how it complements taxonomy, molecular phylogenetics and population genetics

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Regulation of ribosome biogenesis within the nucleolus

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Protozoan Diversity: Converging Estimates of the Global Number of Free-Living Ciliate Species

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Local and Temporal Distribution of Different Genotypes of Pond-Dwelling Stentor coeruleus

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Divergent Perspectives on Protist Species Richness

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Geographical genetic structure within the human lung fluke, Paragonimus westermani, detected from DNA sequences

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Genetic diversity in populations of a freshwater ciliate

inferredcites →https://doi.org/10.1046/j.1365-2699.2001.00518.xopenalex-snapshot

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A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

inferredcites →https://doi.org/10.1080/11956860.1996.11682355openalex-snapshot

Population structure ofEuplotesciliates revealed by RAPD fingerprinting

inferredcites →https://doi.org/10.1086/417338openalex-snapshot

Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot

MODELTEST: testing the model of DNA substitution.

inferredcites →https://doi.org/10.1093/bioinformatics/17.12.1244openalex-snapshot

MEGA2: molecular evolutionary genetics analysis software

inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot

MRBAYES: Bayesian inference of phylogenetic trees

inferredcites →https://doi.org/10.1093/bioinformatics/9.6.735openalex-snapshot

DCSE, an interactive tool for sequence alignment and secondary structure research

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

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The Origins of Eukaryotic Gene Structure

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Patterns of Protein Evolution in Tetrahymena thermophila: Implications for Estimates of Effective Population Size

inferredcites →https://doi.org/10.1093/molbev/msl032openalex-snapshot

Genome Architecture Drives Protein Evolution in Ciliates

inferredcites →https://doi.org/10.1093/molbev/msl128openalex-snapshot

Large Global Effective Population Sizes in Paramecium

inferredcites →https://doi.org/10.1093/molbev/msn266openalex-snapshot

Genetic Diversity in the Paramecium aurelia Species Complex

inferredcites →https://doi.org/10.1093/nar/18.1.173openalex-snapshot

Nucleotide sequence of the mitochondrial genome ofParamecium

inferredcites →https://doi.org/10.1093/nar/27.14.2825openalex-snapshot

Construction of a variability map for eukaryotic large subunit ribosomal RNA

inferredcites →https://doi.org/10.1093/nar/gkg270openalex-snapshot

Complete sequence of the mitochondrial genome of Tetrahymena thermophila and comparative methods for identifying highly divergent genes

inferredcites →https://doi.org/10.1093/nar/gki352openalex-snapshot

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

inferredcites →https://doi.org/10.1099/ijs.0.64865-0openalex-snapshot

Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena

inferredcites →https://doi.org/10.1111/j.0014-3820.2002.tb01455.xopenalex-snapshot

SPECIATION IN ANCIENT CRYPTIC SPECIES COMPLEXES: EVIDENCE FROM THE MOLECULAR PHYLOGENY OF BRACHIONUS PLICATILIS (ROTIFERA)

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03715.xopenalex-snapshot

Speciation with gene flow could be common

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03750.xopenalex-snapshot

Recent divergence with gene flow in Tennessee cave salamanders (Plethodontidae:Gyrinophilus) inferred from gene genealogies

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03857.xopenalex-snapshot

Twenty years of phylogeography: the state of the field and the challenges for the Southern Hemisphere

inferredcites →https://doi.org/10.1111/j.1462-2920.2007.01486.xopenalex-snapshot

High mitochondrial haplotype diversity of Coleps sp. (Ciliophora: Prostomatida)

inferredcites →https://doi.org/10.1111/j.1550-7408.1996.tb04509.xopenalex-snapshot

Identifying and Distinguishing Sibling Species in the Tetrahymena pyriformis Complex (Ciliophora, Oligohymenophorea) Using PCR/RFLP Analysis of Nuclear Ribosomal DNA

inferredcites →https://doi.org/10.1111/j.1550-7408.1999.tb04627.xopenalex-snapshot

Analysis of Intraspecific Sequence Variation Among Eight Isolates of the Rumen Symbiont, Isotricha prostoma (Ciliophora), from Two Continents

inferredcites →https://doi.org/10.1111/j.1550-7408.2005.00068.xopenalex-snapshot

Intraspecific Genetic Variation in Paramecium Revealed by Mitochondrial Cytochrome c Oxidase I Sequences

inferredcites →https://doi.org/10.1111/j.1550-7408.2005.3327r.xopenalex-snapshot

Paramecium aureliaRevisited

inferredcites →https://doi.org/10.1111/j.1550-7408.2006.00113.xopenalex-snapshot

Population Genetic Structure of Carchesium polypinum (Ciliophora: Peritrichia) in Four Chinese Lakes Inferred from ISSR Fingerprinting: High Diversity but Low Differentiation

inferredcites →https://doi.org/10.1111/j.1550-7408.2006.00116.xopenalex-snapshot

Species of Tetrahymena Identical by Small Subunit rRNA Gene Sequences are Discriminated by Mitochondrial Cytochrome c Oxidase I Gene Sequences

inferredcites →https://doi.org/10.1111/j.1550-7408.2008.00330.xopenalex-snapshot

Genetic, Morphological, and Ecological Diversity of Spatially Separated Clones of Meseres corlissi Petz & Foissner, 1992 (Ciliophora, Spirotrichea)

inferredcites →https://doi.org/10.1139/f99-285openalex-snapshot

Cryptic species diversity and evolution in the amphipod genus Hyalella within central glaciated North America: a molecular phylogenetic approach

inferredcites →https://doi.org/10.1146/annurev.genet.37.110801.142526openalex-snapshot

Mitochondria of Protists

inferredcites →https://doi.org/10.1186/1471-2148-7-121openalex-snapshot

Cryptic animal species are homogeneously distributed among taxa and biogeographical regions

inferredcites →https://doi.org/10.1186/1471-2148-7-162openalex-snapshot

DNA evidence for global dispersal and probable endemicity of protozoa

inferredcites →https://doi.org/10.1360/02yc0157openalex-snapshot

Intraspecific phylogeography of Carchesium polypinum (Peritrichia, Ciliophora) from China, inferred from 18S-ITS1-5.8S ribosomal DNA

inferredcites →https://doi.org/10.1371/journal.pone.0000650openalex-snapshot

Complete Mitochondrial Genome Sequence of Three Tetrahymena Species Reveals Mutation Hot Spots and Accelerated Nonsynonymous Substitutions in Ymf Genes

inferredcites →https://doi.org/10.3347/kjp.1999.37.4.215openalex-snapshot

General properties and phylogenetic utilities of nuclear ribosomal DNA and mitochondrial DNA commonly used in molecular systematics

inferredcites →https://doi.org/10.3354/ame041055openalex-snapshot

Reframing the Everything is everywhere debate: evidence for high gene flow and diversity in ciliate morphospecies

inferredcites →https://doi.org/10.5860/choice.37-5647openalex-snapshot

Phylogeography: the history and formation of species

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Polymorphism and inconsistencies in the taxonomy of Diplodinium anisacanthum da Cunha, 1914 (Ciliophora, Entodiniomorphida, Ophryoscolecidae) and taxonomic notes on the genus Diplodinium Schuberg, 1888

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Heterogeneous Rates of Molecular Evolution Among Cryptic Species of the Ciliate Morphospecies Chilodonella uncinata

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Worldwide sampling reveals low genetic variability in populations of the freshwater ciliate Paramecium biaurelia (P. aurelia species complex, Ciliophora, Protozoa)

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Spatial genetic variation, phylogeography and barcoding of the peritrichous ciliate Carchesium polypinum

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Intra-population genetic diversity and its effects on outlining genetic diversity of ciliate populations: Using Paramecium multimicronucleatum as an example

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Identification of scuticociliates (Pseudocohnilembus persalinus, P. longisetus, Uronema marinum and Miamiensis avidus) based on the cox1 sequence

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Expanding Character Sampling for Ciliate Phylogenetic Inference Using Mitochondrial SSU-rDNA as a Molecular Marker

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Utility of Genetic Markers and Morphology for Species Discrimination within the Order Tintinnida (Ciliophora, Spirotrichea)

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Diversification and Phylogenetics of Mobilid Peritrichs (Ciliophora) with Description of Urceolaria parakorschelti sp. nov.

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Intraspecific variability in several isolates of Philasterides dicentrarchi (syn. Miamiensis avidus), a scuticociliate parasite of farmed turbot

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Survey of Paramecium duboscqui using three markers and assessment of the molecular variability in the genus Paramecium

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Utility of combining morphological characters, nuclear and mitochondrial genes: An attempt to resolve the conflicts of species identification for ciliated protists

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Cryptic host-driven speciation of mobilid ciliates epibiotic on freshwater planarians

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Four freshwater cyrtophorids from the Lake Weishan Wetland, China (Protozoa, Ciliophora): taxonomy, phylogeny, and description of a new species

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Comparative analysis of the mitochondrial cytochrome c oxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker

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COI gene and ecological data suggest size-dependent high dispersal and low intra-specific diversity in free-living terrestrial protists (Euglyphida: Assulina)

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Holarctic phylogeography of the testate amoeba H yalosphenia papilio (Amoebozoa: Arcellinida) reveals extensive genetic diversity explained more by environment than dispersal limitation

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