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CBOL Protist Working Group: Barcoding Eukaryotic Richness beyond the Animal, Plant, and Fungal Kingdoms

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/j.1537-2197.1977.tb15738.xopenalex-snapshot
SEXUAL AND GENETIC ISOLATION IN THE COSMOPOLITAN ALGAL SPECIES PANDORINA MORUM
inferredcites →https://doi.org/10.1007/s10126-002-0076-zopenalex-snapshot
Phylogenetic Identification of Symbiotic Dinoflagellates via Length Heteroplasmy in Domain V of Chloroplast Large Subunit (cp23S)?Ribosomal DNA Sequences
inferredcites →https://doi.org/10.1007/s13127-011-0050-6openalex-snapshot
Barcoding diatoms: evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols
inferredcites →https://doi.org/10.1016/j.protis.2006.10.001openalex-snapshot
Reproductive Isolation among Sympatric Cryptic Species in Marine Diatoms
inferredcites →https://doi.org/10.1016/j.protis.2007.02.001openalex-snapshot
Meeting Report: Sloan Foundation Workshop to Resolve Problems Relating to the Taxonomy of Microorganisms and to Culture Collections Arising from the Barcoding Initiatives; Portland ME, November 6-7, 2006
inferredcites →https://doi.org/10.1016/j.protis.2007.04.001openalex-snapshot
An Assessment of Potential Diatom “Barcode” Genes (cox1, rbcL, 18S and ITS rDNA) and their Effectiveness in Determining Relationships in Sellaphora (Bacillariophyta)
inferredcites →https://doi.org/10.1016/j.protis.2009.07.001openalex-snapshot
Barcoding of Diatoms: Nuclear Encoded ITS Revisited
inferredcites →https://doi.org/10.1016/j.protis.2009.07.003openalex-snapshot
Barcoding Amoebae: Comparison of SSU, ITS and COI Genes as Tools for Molecular Identification of Naked Lobose Amoebae
inferredcites →https://doi.org/10.1016/j.protis.2010.05.002openalex-snapshot
Comparing Potential COI and SSU rDNA Barcodes for Assessing the Diversity and Phylogenetic Relationships of Cyphoderiid Testate Amoebae (Rhizaria: Euglyphida)
inferredcites →https://doi.org/10.1016/j.protis.2010.09.005openalex-snapshot
Barcoding Diatoms: Exploring Alternatives to COI-5P
inferredcites →https://doi.org/10.1016/j.protis.2010.10.003openalex-snapshot
Emerging Diversity within Chrysophytes, Choanoflagellates and Bicosoecids Based on Molecular Surveys
inferredcites →https://doi.org/10.1016/j.protis.2011.10.002openalex-snapshot
Molecular Phylogeny and Morphological Evolution of the Acantharia (Radiolaria)
inferredcites →https://doi.org/10.1016/j.protis.2011.10.003openalex-snapshot
COI Barcoding of Nebelid Testate Amoebae (Amoebozoa: Arcellinida): Extensive Cryptic Diversity and Redefinition of the Hyalospheniidae Schultze
inferredcites →https://doi.org/10.1016/j.ympev.2009.10.014openalex-snapshot
Probing into the diversity of trypanosomatid flagellates parasitizing insect hosts in South-West China reveals both endemism and global dispersal
inferredcites →https://doi.org/10.1038/35054537openalex-snapshot
Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton
inferredcites →https://doi.org/10.1038/ismej.2011.6openalex-snapshot
Protistan microbial observatory in the Cariaco Basin, Caribbean. I. Pyrosequencing vs Sanger insights into species richness
inferredcites →https://doi.org/10.1038/ismej.2012.36openalex-snapshot
Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing
inferredcites →https://doi.org/10.1073/pnas.062169599openalex-snapshot
Novel kingdom-level eukaryotic diversity in anoxic environments
inferredcites →https://doi.org/10.1073/pnas.0905841106openalex-snapshot
Extreme diversity in noncalcifying haptophytes explains a major pigment paradox in open oceans
inferredcites →https://doi.org/10.1073/pnas.1013337108openalex-snapshot
Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life
inferredcites →https://doi.org/10.1073/pnas.1018426108openalex-snapshot
Ultra-deep sequencing of foraminiferal microbarcodes unveils hidden richness of early monothalamous lineages in deep-sea sediments
inferredcites →https://doi.org/10.1073/pnas.1117018109openalex-snapshot
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
inferredcites →https://doi.org/10.1073/pnas.96.6.2864openalex-snapshot
Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces
inferredcites →https://doi.org/10.1078/1434-4610-00002openalex-snapshot
The Significance of a Coincidence between Evolutionary Landmarks Found in Mating Affinity and a DNA Sequence
inferredcites →https://doi.org/10.1080/09670262.2010.498586openalex-snapshot
The use of partialcox1,rbcL and LSU rDNA sequences for phylogenetics and species identification within theNitzschia paleaspecies complex (Bacillariophyceae)
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1098/rspb.2011.2301openalex-snapshot
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins
inferredcites →https://doi.org/10.1098/rstb.2005.1719openalex-snapshot
Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications
inferredcites →https://doi.org/10.1099/ijs.0.64865-0openalex-snapshot
Barcoding ciliates: a comprehensive study of 75 isolates of the genus Tetrahymena
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04480.xopenalex-snapshot
Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water
inferredcites →https://doi.org/10.1111/j.1440-1835.2009.00530.xopenalex-snapshot
On the utility of DNA barcoding for species differentiation among brown macroalgae (Phaeophyceae) including a novel extraction protocol
inferredcites →https://doi.org/10.1111/j.1462-2920.2010.02332.xopenalex-snapshot
Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions
inferredcites →https://doi.org/10.1111/j.1462-2920.2011.02668.xopenalex-snapshot
Bacterial species may exist, metagenomics reveal
inferredcites →https://doi.org/10.1111/j.1529-8817.2007.00320.xopenalex-snapshot
RECOGNIZING DINOFLAGELLATE SPECIES USING ITS rDNA SEQUENCES1
inferredcites →https://doi.org/10.1111/j.1529-8817.2007.00341.xopenalex-snapshot
UNIVERSAL PRIMERS AMPLIFY A 23S rDNA PLASTID MARKER IN EUKARYOTIC ALGAE AND CYANOBACTERIA1
inferredcites →https://doi.org/10.1111/j.1529-8817.2010.00807.xopenalex-snapshot
DNA BARCODING IS A POWERFUL TOOL TO UNCOVER ALGAL DIVERSITY: A CASE STUDY OF THE PHYLLOPHORACEAE (GIGARTINALES, RHODOPHYTA) IN THE CANADIAN FLORA
inferredcites →https://doi.org/10.1111/j.1529-8817.2010.00851.xopenalex-snapshot
DNA BARCODING OF CHLORARACHNIOPHYTES USING NUCLEOMORPH ITS SEQUENCES1
inferredcites →https://doi.org/10.1111/j.1529-8817.2011.01053.xopenalex-snapshot
NEW EVIDENCE FOR MORPHOLOGICAL AND GENETIC VARIATION IN THE COSMOPOLITAN COCCOLITHOPHORE EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE) FROM THE COX1b‐ATP4 GENES1
inferredcites →https://doi.org/10.1111/j.1550-7408.1998.tb05068.xopenalex-snapshot
The Evolutionary History of the Genus Acanthamoeba and the Identification of Eight New 18S rRNA Gene Sequence Types
inferredcites →https://doi.org/10.1111/j.1550-7408.2005.00053.xopenalex-snapshot
The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
inferredcites →https://doi.org/10.1111/j.1550-7408.2005.00068.xopenalex-snapshot
Intraspecific Genetic Variation in Paramecium Revealed by Mitochondrial Cytochrome c Oxidase I Sequences
inferredcites →https://doi.org/10.1111/j.1550-7408.2005.05202003_1_10.xopenalex-snapshot
How many novel eukaryotic “kingdoms”? Pitfalls and limitations of environmental DNA surveys
inferredcites →https://doi.org/10.1111/j.1550-7408.2009.00466.xopenalex-snapshot
Invalidation of Hyperamoeba by Transferring its Species to Other Genera of Myxogastria
inferredcites →https://doi.org/10.1111/j.1550-7408.2009.00468.xopenalex-snapshot
Short rDNA Barcodes for Species Identification in Foraminifera
inferredcites →https://doi.org/10.1111/j.1550-7408.2011.00585.xopenalex-snapshot
Survey of the Efficacy of a Short Fragment of the rbc L Gene as a Supplemental DNA Barcode for Diatoms
inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03041.xopenalex-snapshot
DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer
inferredcites →https://doi.org/10.1111/j.1755-0998.2012.03119.xopenalex-snapshot
An emergent science on the brink of irrelevance: a review of the past 8 years of DNA barcoding
inferredcites →https://doi.org/10.1128/aem.00178-09openalex-snapshot
High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous CiliateCarchesium polypinumin the Grand River Basin (North America)
inferredcites →https://doi.org/10.1139/b08-001openalex-snapshot
A DNA barcode examination of the red algal family Dumontiaceae in Canadian waters reveals substantial cryptic species diversity. 1. The foliose Dilsea–Neodilsea complex and WeeksiaThis paper is one of a selection of papers published in the Special Issue on Systematics Research.
inferredcites →https://doi.org/10.1139/b08-056openalex-snapshot
Assigning morphological variants of Fucus (Fucales, Phaeophyceae) in Canadian waters to recognized species using DNA barcoding
inferredcites →https://doi.org/10.1186/1741-7007-2-13openalex-snapshot
How many novel eukaryotic 'kingdoms'? Pitfalls and limitations of environmental DNA surveys
inferredcites →https://doi.org/10.1186/gb-2006-7-9-116openalex-snapshot
Genomics and the bacterial species problem.
inferredcites →https://doi.org/10.1371/journal.pbio.0020354openalex-snapshot
DNA Barcoding: Promise and Pitfalls
inferredcites →https://doi.org/10.1371/journal.pbio.1001127openalex-snapshot
How Many Species Are There on Earth and in the Ocean?
inferredcites →https://doi.org/10.1371/journal.pone.0013991openalex-snapshot
Environmental Barcoding Reveals Massive Dinoflagellate Diversity in Marine Environments
inferredcites →https://doi.org/10.1371/journal.pone.0042780openalex-snapshot
Evaluating the Ribosomal Internal Transcribed Spacer (ITS) as a Candidate Dinoflagellate Barcode Marker

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Contemporary integrative taxonomy for sexually deprived protists: A case study of Trachelomonas (Euglenaceae) from western Ukraine
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Towards a phylogenetic classification of the Myxomycetes
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Morphological and phylogenetic analyses in Auriculariales (Basidiomycota, Agaricomycetes) reveal nine new species in Basidiodendron
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DNA metabarcoding of diatoms: A next-generation tool for aquatic biodiversity and bioassessment
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Profiling the eukaryotic diversity over a year in a lake ecosystem through short- and long-read metabarcoding
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Protist Evolution and Phylogeny
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Protozoan Diversity and Biogeography
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Rhizaria
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Eukaryotic cellular intricacies shape mitochondrial proteomic complexity
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An Alignment Free Framework for Taxonomic Inference From Codon and Codon‐Pair Usage
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Droplet digital PCR as a tool for investigating dynamics of cryptic symbionts
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Comparing the performance of 12S mitochondrial primers for fish environmental DNA across ecosystems
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Dataset complexity impacts both MOTU delimitation and biodiversity estimates in eukaryotic 18S rRNA metabarcoding studies
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MIDORI2: A collection of quality controlled, preformatted, and regularly updated reference databases for taxonomic assignment of eukaryotic mitochondrial sequences
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Eight years of weekly eDNA monitoring in the North‐Western Pacific
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Differential ecological adaptation of diverse Chaetoceros species revealed by metabarcoding analysis
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V9 Hypervariable Region Metabarcoding Primers for Euglenozoa and Metamonada
inferred← citeshttps://doi.org/10.1002/edn3.70041openalex-snapshot
The Origin of the Matter Matters: The Influence of Terrestrial Inputs on Coastal Benthic Microeukaryote Communities Revealed by eDNA
inferred← citeshttps://doi.org/10.1002/edn3.70346openalex-snapshot
Long‐Read Metabarcoding With Optimized Bioinformatic Analysis Outperforms Short‐Read Metabarcoding for Assessing Soil Protist Diversity and Ecology
inferred← citeshttps://doi.org/10.1002/lno.11379openalex-snapshot
Expression of genes involved in phagocytosis in uncultured heterotrophic flagellates
inferred← citeshttps://doi.org/10.1002/lom3.10330openalex-snapshot
Effects of intragenomic polymorphism in the SSU rRNA gene on estimating marine microeukaryotic diversity: A test for ciliates using single‐cell high‐throughput DNA sequencing
inferred← citeshttps://doi.org/10.1007/978-1-0716-3581-0_8openalex-snapshot
DNA Sequencing Technologies and DNA Barcoding
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DNA Barcoding Techniques for Protists
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Protocol for the Molecular Identification of Autotrophic Euglenids in Environmental Samples
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Development of CRISPR/Cas9 for Efficient Genome Editing in Toxoplasma gondii
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Characterization of Eukaryotic Microbiome Using 18S Amplicon Sequencing
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Introduction
inferred← citeshttps://doi.org/10.1007/978-3-030-16057-9_6openalex-snapshot
Eukaryotes
inferred← citeshttps://doi.org/10.1007/978-3-030-99712-0_5openalex-snapshot
Trypanosoma Cruzi: An Ancient and Successful Enzootic Parasite
inferred← citeshttps://doi.org/10.1007/978-3-031-43799-1_6openalex-snapshot
Protist DNA from Lake Sediments
inferred← citeshttps://doi.org/10.1007/978-3-031-83685-5_2openalex-snapshot
Why Study Biodiversity in the Neotropics?
inferred← citeshttps://doi.org/10.1007/978-3-319-24945-2_14openalex-snapshot
Calcification
inferred← citeshttps://doi.org/10.1007/978-3-319-28149-0_20openalex-snapshot
Apicomplexa
inferred← citeshttps://doi.org/10.1007/978-3-319-32669-6_20-1openalex-snapshot
Apicomplexa
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Mitochondrial RNA Editing and Processing in Diplonemid Protists
inferred← citeshttps://doi.org/10.1007/978-3-319-89833-9_4openalex-snapshot
Tree Endophytes: Cryptic Drivers of Tropical Forest Diversity
inferred← citeshttps://doi.org/10.1007/978-4-431-55130-0_1openalex-snapshot
Protistan Diversity in Environmental Molecular Surveys
inferred← citeshttps://doi.org/10.1007/978-94-007-0668-2_4openalex-snapshot
Patterns of biodiversity
inferred← citeshttps://doi.org/10.1007/978-94-017-8890-8_2openalex-snapshot
Soils Supporting Biodiversity
inferred← citeshttps://doi.org/10.1007/978-94-017-9118-2_7openalex-snapshot
Taxonomy and Phylogeny of Unicellular Eukaryotes
inferred← citeshttps://doi.org/10.1007/978-981-15-6655-4_21openalex-snapshot
The Utility of DNA Barcoding Technology in the Authentication of Medicinal Plants in Illegal Trade: A Critical Review
inferred← citeshttps://doi.org/10.1007/s00018-023-04843-3openalex-snapshot
Looking outside the box: a comparative cross-kingdom view on the cell biology of the three major lineages of eukaryotic multicellular life
inferred← citeshttps://doi.org/10.1007/s00248-015-0627-2openalex-snapshot
Is Planktonic Diversity Well Recorded in Sedimentary DNA? Toward the Reconstruction of Past Protistan Diversity
inferred← citeshttps://doi.org/10.1007/s00248-019-01463-yopenalex-snapshot
Rain-Fed Granite Rock Basins Accumulate a High Diversity of Dormant Microbial Eukaryotes
inferred← citeshttps://doi.org/10.1007/s00248-022-02129-yopenalex-snapshot
Long-Read Sequencing Analysis Revealed the Impact of Forest Conversion on Soil Fungal Diversity in Limu Mountain, Hainan
inferred← citeshttps://doi.org/10.1007/s00300-015-1683-2openalex-snapshot
Contribution towards a morphological and molecular taxonomic reference library of benthic marine diatoms from two Arctic fjords on Svalbard (Norway)
inferred← citeshttps://doi.org/10.1007/s00300-023-03131-xopenalex-snapshot
Metabarcoding inventory of an arctic tundra soil ecosystem reveals highly heterogeneous communities at a small scale
inferred← citeshttps://doi.org/10.1007/s00436-024-08120-5openalex-snapshot
Genetic variation of the freshwater snail Indoplanorbis exustus (Gastropoda: Planorbidae) in Thailand, inferred from 18S and 28S rDNA sequences
inferred← citeshttps://doi.org/10.1007/s10144-014-0472-zopenalex-snapshot
High‐throughput DNA barcoding for ecological network studies
inferred← citeshttps://doi.org/10.1007/s10201-019-00587-xopenalex-snapshot
The genetic diversity and phylogeny of green microalgae in the genus Choricystis (Trebouxiophyceae, Chlorophyta) in Lake Baikal
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Endangered monoxenous trypanosomatid parasites: a lesson from island biogeography
inferred← citeshttps://doi.org/10.1007/s10539-023-09916-yopenalex-snapshot
DNA barcoding and the changing ontological commitments of taxonomy
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Fresh insights into Mediterranean biodiversity: environmental DNA reveals spatio-temporal patterns of stream invertebrate communities on Sicily
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Comparative analysis of phytoplankton diversity using microscopy and metabarcoding: insights from an eLTER station in the Northern Adriatic Sea
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Protistan assemblages in natural and man-made intermittent ponds of the New Jersey Pinelands
inferred← citeshttps://doi.org/10.1007/s10750-026-06306-9openalex-snapshot
Why morphology is not enough: molecular data reshaping photosynthetic euglenoid taxonomy and ecology
inferred← citeshttps://doi.org/10.1007/s10811-020-02190-5openalex-snapshot
Identification of eukaryotic microalgal strains
inferred← citeshttps://doi.org/10.1007/s10811-024-03267-1openalex-snapshot
Advances of high-throughput sequencing for unraveling biotechnological potential of microalgal-bacterial communities
inferred← citeshttps://doi.org/10.1007/s11033-022-08015-7openalex-snapshot
DNA barcoding, an effective tool for species identification: a review
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Exploring the impact of urban pollution on ciliate diversity along the Sapucaí River (Minas Gerais, Brazil) via DNA metabarcoding
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Species diversity of myxomycetes associated with different terrestrial ecosystems, substrata (microhabitats) and environmental factors
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Functional, Phylogenetic and Host-Geographic Signatures of Labyrinthula spp. Provide for Putative Species Delimitation and a Global-Scale View of Seagrass Wasting Disease
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Eukaryotic Plankton Species Diversity in the Western Channel of the Korea Strait using 18S rDNA Sequences and its Implications for Water Masses
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New Paramecium (Ciliophora, Oligohymenophorea) congeners shape our view on its biodiversity
inferred← citeshttps://doi.org/10.1007/s13127-015-0230-xopenalex-snapshot
Sex or no sex? Group I introns and independent marker genes reveal the existence of three sexual but reproductively isolated biospecies in Trichia varia (Myxomycetes)
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Worldwide sampling reveals low genetic variability in populations of the freshwater ciliate Paramecium biaurelia (P. aurelia species complex, Ciliophora, Protozoa)
inferred← citeshttps://doi.org/10.1007/s13199-012-0195-xopenalex-snapshot
Multiple microalgal partners in symbiosis with the acantharian Acanthochiasma sp. (Radiolaria)
inferred← citeshttps://doi.org/10.1007/s13205-023-03841-3openalex-snapshot
Metagenomics and metatranscriptomics as potential driving forces for the exploration of diversity and functions of micro-eukaryotes in soil
inferred← citeshttps://doi.org/10.1007/s13280-015-0663-7openalex-snapshot
Microbial metagenomics in the Baltic Sea: Recent advancements and prospects for environmental monitoring
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Mini review: Diatom species as seen through a molecular window
inferred← citeshttps://doi.org/10.1007/s42770-025-01866-9openalex-snapshot
Nanopore sequencing of the Tunisian gut microbiome: effect of the DNA extraction methods
inferred← citeshttps://doi.org/10.1016/b978-0-12-407694-5.00008-0openalex-snapshot
Cell Biology of Chromerids
inferred← citeshttps://doi.org/10.1016/b978-0-12-417015-5.00010-4openalex-snapshot
Freshwater Conservation and Biomonitoring of Structure and Function
inferred← citeshttps://doi.org/10.1016/b978-0-12-805089-7.00005-6openalex-snapshot
Molecular Techniques and Current Research Approaches
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References
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How Many Living Species?
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Paleogenetic approaches in tsunami deposit studies
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DNA barcoding
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Advances in Biotechnological Tools for Bioremediation of Wastewater Using Bacterial–Algal Symbiotic System
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Uses of molecular taxonomy in identifying phytoplankton communities from the Continuous Plankton Recorder Survey
inferred← citeshttps://doi.org/10.1016/b978-0-12-824281-0.00006-3openalex-snapshot
Molecular techniques and current research approaches
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Why We Need Sustainable Networks Bridging Countries, Disciplines, Cultures and Generations for Aquatic Biomonitoring 2.0: A Perspective Derived From the DNAqua-Net COST Action
inferred← citeshttps://doi.org/10.1016/j.agee.2024.109132openalex-snapshot
Land use and temperature shape the beta diversity of soil nematodes across the Mollisol zone in northeast China
inferred← citeshttps://doi.org/10.1016/j.agee.2025.109854openalex-snapshot
Nematode and protist community responses in soil to land use conversion from conventional to organic farming
inferred← citeshttps://doi.org/10.1016/j.algal.2020.102133openalex-snapshot
Development and application of quantitative real-time PCR based on the mitochondrial cytochrome oxidase subunit I gene for early detection of the grazer Poterioochromonas malhamensis contaminating Chlorella culture
inferred← citeshttps://doi.org/10.1016/j.apsoil.2024.105464openalex-snapshot
Profiling the eukaryotic soil microbiome with differential primers and an antifungal peptide nucleic acid probe (PNA): Implications for diversity assessment
inferred← citeshttps://doi.org/10.1016/j.btre.2025.e00883openalex-snapshot
Microalgae strains isolated from piggery wastewater in Ecuador: Effective nitrogen compound removal and growth potential in extremophile conditions
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2024.108226openalex-snapshot
Advances in bioinformatic approaches to tardigrade phylogeny
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2025.108872openalex-snapshot
DNA barcoding markers: A comprehensive review and taxonomic classification across species
inferred← citeshttps://doi.org/10.1016/j.crmicr.2026.100643openalex-snapshot
Sublethal oxytetracycline and copper exposure alters rRNA gene copy number, expression, and intragenomic polymorphism in ciliates
inferred← citeshttps://doi.org/10.1016/j.cub.2023.10.065openalex-snapshot
Evolution: No end in sight for novel incredible (heterotrophic) protists
inferred← citeshttps://doi.org/10.1016/j.cub.2023.12.032openalex-snapshot
Meteora sporadica, a protist with incredible cell architecture, is related to Hemimastigophora
inferred← citeshttps://doi.org/10.1016/j.ecoinf.2016.04.004openalex-snapshot
Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2
inferred← citeshttps://doi.org/10.1016/j.ecolind.2017.10.041openalex-snapshot
Metabarcoding of benthic ciliate communities shows high potential for environmental monitoring in salmon aquaculture
inferred← citeshttps://doi.org/10.1016/j.ecolind.2020.106225openalex-snapshot
18S-V9 DNA metabarcoding detects the effect of water-quality impairment on stream biofilm eukaryotic assemblages
inferred← citeshttps://doi.org/10.1016/j.ecolind.2020.106725openalex-snapshot
Development of a novel metric for evaluating diatom assemblages in rivers using DNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.ecss.2026.110258openalex-snapshot
Diagnosis of Skeletal Eroding Band (SEB) and spatial observations of coral health and disease in Koh Tao, the Gulf of Thailand
inferred← citeshttps://doi.org/10.1016/j.ejop.2014.11.004openalex-snapshot
Eight species in the Nebela collaris complex: Nebela gimlii (Arcellinida, Hyalospheniidae), a new species described from a Swiss raised bog
inferred← citeshttps://doi.org/10.1016/j.ejop.2015.04.002openalex-snapshot
Cunea n. g. (Amoebozoa, Dactylopodida) with two cryptic species isolated from different areas of the ocean
inferred← citeshttps://doi.org/10.1016/j.ejop.2015.06.005openalex-snapshot
Environmental DNA COI barcoding for quantitative analysis of protists communities: A test using the Nebela collaris complex (Amoebozoa; Arcellinida; Hyalospheniidae)
inferred← citeshttps://doi.org/10.1016/j.ejop.2016.02.003openalex-snapshot
Protist metabarcoding and environmental biomonitoring: Time for change
inferred← citeshttps://doi.org/10.1016/j.ejop.2016.08.001openalex-snapshot
Genetic structure of a morphological species within the amoeba genus Korotnevella (Amoebozoa: Discosea), revealed by the analysis of two genes
inferred← citeshttps://doi.org/10.1016/j.ejop.2016.10.006openalex-snapshot
Bridging the gap between morphological species and molecular barcodes – Exemplified by loricate choanoflagellates
inferred← citeshttps://doi.org/10.1016/j.ejop.2016.12.002openalex-snapshot
NAD9/NAD7 (mitochondrial nicotinamide adenine dinucleotide dehydrogenase gene)—A new “Holy Grail” phylogenetic and DNA-barcoding marker for Arcellinida (Amoebozoa)?
inferred← citeshttps://doi.org/10.1016/j.ejop.2017.04.009openalex-snapshot
Systematic studies on ciliates (Alveolata, Ciliophora) in China: Progress and achievements based on molecular information
inferred← citeshttps://doi.org/10.1016/j.ejop.2017.06.008openalex-snapshot
Quadrulella texcalense sp. nov. from a Mexican desert: An unexpected new environment for hyalospheniid testate amoebae
inferred← citeshttps://doi.org/10.1016/j.ejop.2017.09.003openalex-snapshot
Two new species of Ripella (Amoebozoa, Vannellida) and unusual intragenomic variability in the SSU rRNA gene of this genus
inferred← citeshttps://doi.org/10.1016/j.ejop.2018.08.005openalex-snapshot
En garde! Redefinition of Nebela militaris (Arcellinida, Hyalospheniidae) and erection of Alabasta gen. nov.
inferred← citeshttps://doi.org/10.1016/j.ejop.2020.125721openalex-snapshot
Protist diversity and function in the dark ocean – Challenging the paradigms of deep-sea ecology with special emphasis on foraminiferans and naked protists
inferred← citeshttps://doi.org/10.1016/j.ejop.2020.125727openalex-snapshot
Amoeboid protist systematics: A report on the “Systematics of amoeboid protists” symposium at the VIIIth ECOP/ISOP meeting in Rome, 2019
inferred← citeshttps://doi.org/10.1016/j.ejop.2025.126168openalex-snapshot
Diversity of protists in dryland habitats of Qatar revealed by environmental metabarcoding
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2015.04.001openalex-snapshot
Performance of cytochrome c oxidase subunit I (COI), ribosomal DNA Large Subunit (LSU) and Internal Transcribed Spacer 2 (ITS2) in DNA barcoding of Collembola
inferred← citeshttps://doi.org/10.1016/j.foodcont.2022.108880openalex-snapshot
Species authentication of canned mackerel: Challenges in molecular identification and potential drivers of mislabelling
inferred← citeshttps://doi.org/10.1016/j.forsciint.2020.110552openalex-snapshot
Comparative study on diatom morphology and molecular identification in drowning cases
inferred← citeshttps://doi.org/10.1016/j.gecco.2023.e02649openalex-snapshot
Spatiotemporal distribution patterns of soil nematodes along an altitudinal gradient in the cold temperate zone of China
inferred← citeshttps://doi.org/10.1016/j.gene.2015.10.026openalex-snapshot
Massively parallel sequencing-based survey of eukaryotic community structures in Hiroshima Bay and Ishigaki Island
inferred← citeshttps://doi.org/10.1016/j.gpb.2016.06.003openalex-snapshot
Plant Proteins are Smaller Because They are Encoded by Fewer Exons than Animal Proteins
inferred← citeshttps://doi.org/10.1016/j.hal.2020.101903openalex-snapshot
The 5S rRNA genes in Alexandrium: their use as a FISH chromosomal marker in studies of the diversity, cell cycle and sexuality of dinoflagellates
inferred← citeshttps://doi.org/10.1016/j.hal.2021.101980openalex-snapshot
The dinoflagellate Alexandrium catenella producing only carbamate toxins may account for the seafood poisonings in Qinhuangdao, China
inferred← citeshttps://doi.org/10.1016/j.hal.2021.102163openalex-snapshot
Horizontal and vertical distribution of Gambierdiscus spp. (Dinophyceae) including novel phylotypes in Japan identified by 18S rDNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.hal.2024.102644openalex-snapshot
From genes to toxins: Profiling Prymnesium parvum during a riverine harmful algal bloom
inferred← citeshttps://doi.org/10.1016/j.hal.2024.102709openalex-snapshot
Optimal growth conditions of the haptophyte Chrysochromulina leadbeateri causing massive fish mortality in Northern Norway
inferred← citeshttps://doi.org/10.1016/j.hal.2024.102795openalex-snapshot
Molecular diversity of benthic harmful dinoflagellates on a tropical reef: Comparing natural and artificial substrate sampling methods using DNA metabarcoding and morphological analysis
inferred← citeshttps://doi.org/10.1016/j.ibiod.2019.03.009openalex-snapshot
Structural diversity of photoautotrophic populations within the UNESCO site ‘Old Cathedral of Coimbra’ (Portugal), using a combined approach
inferred← citeshttps://doi.org/10.1016/j.ijheh.2017.10.008openalex-snapshot
Multiple identification of most important waterborne protozoa in surface water used for irrigation purposes by 18S rRNA amplicon-based metagenomics
inferred← citeshttps://doi.org/10.1016/j.jbc.2022.102089openalex-snapshot
The Toxoplasma glucan phosphatase TgLaforin utilizes a distinct functional mechanism that can be exploited by therapeutic inhibitors
inferred← citeshttps://doi.org/10.1016/j.jcz.2021.04.003openalex-snapshot
Description of Lepidochaetus tirjakovae sp. nov. (Gastrotricha: Paucitubulatina: Chaetonotidae), using morphology and DNA barcoding
inferred← citeshttps://doi.org/10.1016/j.jece.2025.116841openalex-snapshot
Mechanisms of microalgae-induced flocculation for urban water carbon-negative clarification
inferred← citeshttps://doi.org/10.1016/j.jenvman.2017.07.045openalex-snapshot
Early detection monitoring for aquatic non-indigenous species: Optimizing surveillance, incorporating advanced technologies, and identifying research needs
inferred← citeshttps://doi.org/10.1016/j.jmarsys.2021.103531openalex-snapshot
Microzooplankton diversity and potential role in carbon cycling of contrasting Southern Ocean productivity regimes
inferred← citeshttps://doi.org/10.1016/j.jmb.2015.08.008openalex-snapshot
The Evolution of Aggregative Multicellularity and Cell–Cell Communication in the Dictyostelia
inferred← citeshttps://doi.org/10.1016/j.marenvres.2016.04.011openalex-snapshot
Please mind the gap – Visual census and cryptic biodiversity assessment at central Red Sea coral reefs
inferred← citeshttps://doi.org/10.1016/j.marenvres.2026.108326openalex-snapshot
Taxon-specific metabarcoding provides new insights into marine phytoplankton diversity and ecological interactions: a case study of Kareniaceae in China's coastal seas
inferred← citeshttps://doi.org/10.1016/j.marmicro.2019.02.001openalex-snapshot
The genetic diversity, morphology, biogeography, and taxonomic designations of Ammonia (Foraminifera) in the Northeast Atlantic
inferred← citeshttps://doi.org/10.1016/j.marpol.2017.05.022openalex-snapshot
From microscope to management: The critical value of plankton taxonomy to marine policy and biodiversity conservation
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2017.10.022openalex-snapshot
Assessing the effect of mercury pollution on cultured benthic foraminifera community using morphological and eDNA metabarcoding approaches
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2024.116690openalex-snapshot
Comparative assessment of the intragenomic variations of dinoflagellate Tripos species through single-cell sequencing
inferred← citeshttps://doi.org/10.1016/j.mib.2013.10.001openalex-snapshot
Lineage specific gene family enrichment at the microscale in marine systems
inferred← citeshttps://doi.org/10.1016/j.mimet.2021.106203openalex-snapshot
Design of potentially universal SSU primers in myxomycetes using next-generation sequencing
inferred← citeshttps://doi.org/10.1016/j.molbiopara.2014.05.007openalex-snapshot
Evolution of parasitism in kinetoplastid flagellates
inferred← citeshttps://doi.org/10.1016/j.ocecoaman.2025.107542openalex-snapshot
Mind the gap - The need to integrate novel plankton methods alongside ongoing long-term monitoring
inferred← citeshttps://doi.org/10.1016/j.palaeo.2024.112090openalex-snapshot
Marine sedimentary ancient DNA from Antarctic diatoms
inferred← citeshttps://doi.org/10.1016/j.parint.2020.102103openalex-snapshot
Morphological description of Opalina obtrigonoidea Metcalf, 1923 (Heterokonta, Opalinea) from Duttaphrynus melanostictus and evaluation of the ITS region as a suitable genetic marker for inter-species identification in Opalina
inferred← citeshttps://doi.org/10.1016/j.parint.2026.103351openalex-snapshot
Diversity of Hepatozoon (Apicomplexa: Hepatozoidae) parasites in snakes from the Amazonia region, with description of a new species
inferred← citeshttps://doi.org/10.1016/j.pocean.2015.04.015openalex-snapshot
Novel lineage patterns from an automated water sampler to probe marine microbial biodiversity with ships of opportunity
inferred← citeshttps://doi.org/10.1016/j.protis.2013.08.003openalex-snapshot
A Short Guide to Common Heterotrophic Flagellates of Freshwater Habitats Based on the Morphology of Living Organisms
inferred← citeshttps://doi.org/10.1016/j.protis.2014.04.001openalex-snapshot
Ribosomal DNA Organization Patterns within the Dinoflagellate Genus Alexandrium as Revealed by FISH: Life Cycle and Evolutionary Implications
inferred← citeshttps://doi.org/10.1016/j.protis.2014.05.005openalex-snapshot
Creneis carolina gen. et sp. nov. (Heterolobosea), a Novel Marine Anaerobic Protist with Strikingly Derived Morphology and Life Cycle
inferred← citeshttps://doi.org/10.1016/j.protis.2014.07.006openalex-snapshot
Wide Occurrence of SSU rDNA Intragenomic Polymorphism in Foraminifera and its Implications for Molecular Species Identification
inferred← citeshttps://doi.org/10.1016/j.protis.2015.04.001openalex-snapshot
Expansion of the ‘Reticulosphere’: Diversity of Novel Branching and Network-forming Amoebae Helps to Define Variosea (Amoebozoa)
inferred← citeshttps://doi.org/10.1016/j.protis.2016.03.003openalex-snapshot
What an Intron May Tell: Several Sexual Biospecies Coexist in Meriderma spp. (Myxomycetes)
inferred← citeshttps://doi.org/10.1016/j.protis.2016.05.003openalex-snapshot
The Species Problem in Myxomycetes Revisited
inferred← citeshttps://doi.org/10.1016/j.protis.2016.09.004openalex-snapshot
Barcoding Heliozoa: Perspectives of 18S rDNA for Distinguishing Between Acanthocystis Species
inferred← citeshttps://doi.org/10.1016/j.protis.2017.03.005openalex-snapshot
The Protistan Microbiome of Grassland Soil: Diversity in the Mesoscale
inferred← citeshttps://doi.org/10.1016/j.protis.2017.12.005openalex-snapshot
A Deep Hidden Diversity of Dictyostelia
inferred← citeshttps://doi.org/10.1016/j.protis.2018.04.001openalex-snapshot
Discrepancies Between Molecular and Morphological Databases of Soil Ciliates Studied for Temperate Grasslands of Central Europe
inferred← citeshttps://doi.org/10.1016/j.protis.2018.04.007openalex-snapshot
The Hidden Diversity of Flagellated Protists in Soil
inferred← citeshttps://doi.org/10.1016/j.protis.2020.125771openalex-snapshot
Range-wide Phylogeography of a Nivicolous Protist Didymium nivicola Meyl. (Myxomycetes, Amoebozoa): Striking Contrasts Between the Northern and the Southern Hemisphere
inferred← citeshttps://doi.org/10.1016/j.protis.2020.125782openalex-snapshot
A Needle in the Haystack – Mapping Sequences to Morphology Exemplified by the Loricate Choanoflagellate Enibas thessalia sp. nov. (Acanthoecida, Acanthoecidae)
inferred← citeshttps://doi.org/10.1016/j.protis.2024.126016openalex-snapshot
DNA metabarcoding reveals the impact of Cu2+ on soil cercozoan diversity
inferred← citeshttps://doi.org/10.1016/j.pt.2014.09.003openalex-snapshot
Status and prospects of DNA barcoding in medically important parasites and vectors
inferred← citeshttps://doi.org/10.1016/j.pt.2015.06.013openalex-snapshot
Diverse Applications of Environmental DNA Methods in Parasitology
inferred← citeshttps://doi.org/10.1016/j.pt.2022.05.011openalex-snapshot
African trypanosome strategies for conquering new hosts and territories: the end of monophyly?
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2015.07.158openalex-snapshot
The influence of environmental factors on protistan microorganisms in grassland soils along a land-use gradient
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.141729openalex-snapshot
Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.semcdb.2021.12.004openalex-snapshot
Tubulin post-translational modifications in protists – Tiny models for solving big questions
inferred← citeshttps://doi.org/10.1016/j.soilbio.2013.10.024openalex-snapshot
Amplification primers of SSU rDNA for soil protists
inferred← citeshttps://doi.org/10.1016/j.soilbio.2017.04.001openalex-snapshot
Soil protistology rebooted: 30 fundamental questions to start with
inferred← citeshttps://doi.org/10.1016/j.soilbio.2019.107536openalex-snapshot
A methodological framework to embrace soil biodiversity
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108162openalex-snapshot
Effects of ecosystem disturbance on nematode communities in calcareous and red soils: Comparison of taxonomic methods
inferred← citeshttps://doi.org/10.1016/j.soilbio.2022.108861openalex-snapshot
Biomarker metaproteomics for relative taxa abundances across soil organisms
inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109507openalex-snapshot
Assessing soil functioning: What is the added value of soil organic carbon quality measurements alongside total organic carbon content?
inferred← citeshttps://doi.org/10.1016/j.tig.2025.07.009openalex-snapshot
Toward DNA-based taxonomy of prokaryotes and microeukaryotes
inferred← citeshttps://doi.org/10.1016/j.tim.2018.10.009openalex-snapshot
Are We Overestimating Protistan Diversity in Nature?
inferred← citeshttps://doi.org/10.1016/j.tim.2020.05.019openalex-snapshot
Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?
inferred← citeshttps://doi.org/10.1016/j.tree.2014.03.006openalex-snapshot
The others: our biased perspective of eukaryotic genomes
inferred← citeshttps://doi.org/10.1016/j.tree.2019.08.008openalex-snapshot
The New Tree of Eukaryotes
inferred← citeshttps://doi.org/10.1016/j.watres.2018.07.051openalex-snapshot
Towards an eDNA metabarcode-based performance indicator for full-scale municipal wastewater treatment plants
inferred← citeshttps://doi.org/10.1016/j.watres.2020.116767openalex-snapshot
Expanding ecological assessment by integrating microorganisms into routine freshwater biomonitoring
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.05.024openalex-snapshot
Growing diversity of trypanosomatid parasites of flies (Diptera: Brachycera): Frequent cosmopolitism and moderate host specificity
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.08.011openalex-snapshot
Multigene phylogeny resolves deep branching of Amoebozoa
inferred← citeshttps://doi.org/10.1016/j.ympev.2015.10.017openalex-snapshot
Utility of combining morphological characters, nuclear and mitochondrial genes: An attempt to resolve the conflicts of species identification for ciliated protists
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106538openalex-snapshot
A study on the non-monophyletic genera Australothrix and Holostichides based on multigene and morphological analyses with a reexamination of type materials (Protozoa: Ciliophora)
inferred← citeshttps://doi.org/10.1017/9781108654418.003openalex-snapshot
Microbiomes of soils
inferred← citeshttps://doi.org/10.1017/cbo9781139236355.010openalex-snapshot
Protist systematics, ecology and next generation sequencing
inferred← citeshttps://doi.org/10.1017/cbo9781139794749.010openalex-snapshot
Revealing microparasite diversity in aquatic environments using brute force molecular techniques and subtle microscopy
inferred← citeshttps://doi.org/10.1017/s0031182014000766openalex-snapshot
The origins of malaria: there are more things in heaven and earth …
inferred← citeshttps://doi.org/10.1017/s0031182017002049openalex-snapshot
Barcoding in trypanosomes
inferred← citeshttps://doi.org/10.1017/s0031182018001257openalex-snapshot
Parasites and their (endo)symbiotic microbes
inferred← citeshttps://doi.org/10.1017/s0954102019000361openalex-snapshot
Provisional checklist of terrestrial heterotrophic protists from Antarctica
inferred← citeshttps://doi.org/10.1021/acs.biochem.7b00877openalex-snapshot
Exploring the Untapped Biosynthetic Potential of Apicomplexan Parasites
inferred← citeshttps://doi.org/10.1021/acs.est.5c04958openalex-snapshot
The Neglected Role of Heterotrophic Protists in Engineered Water Systems
inferred← citeshttps://doi.org/10.1021/acsinfecdis.8b00113openalex-snapshot
Evaluation of Current and Emerging Antimalarial Medicines for Inhibition of Toxoplasma gondii Growth in Vitro
inferred← citeshttps://doi.org/10.1021/es506158mopenalex-snapshot
Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data
inferred← citeshttps://doi.org/10.1038/ismej.2013.136openalex-snapshot
Lineage-specific molecular probing reveals novel diversity and ecological partitioning of haplosporidians
inferred← citeshttps://doi.org/10.1038/ismej.2015.116openalex-snapshot
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
inferred← citeshttps://doi.org/10.1038/ismej.2015.30openalex-snapshot
Metatranscriptomic census of active protists in soils
inferred← citeshttps://doi.org/10.1038/ismej.2016.31openalex-snapshot
Local diversity of heathland Cercozoa explored by in-depth sequencing
inferred← citeshttps://doi.org/10.1038/ismej.2016.38openalex-snapshot
Diversity and oceanic distribution of the Parmales (Bolidophyceae), a picoplanktonic group closely related to diatoms
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