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The Genome of the Anaerobic Fungus Orpinomyces sp. Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Repetitive Elements: Bioinformatic Identification, Classification and Analysis
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Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen
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Hydrogenosomes of Anaerobic Chytrids: An Alternative Way to Adapt to Anaerobic Environments
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Hydrogenosomes (and Related Organelles, Either) Are Not the Same
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Feruloyl and p-coumaroyl esterase from anaerobic fungi in relation to plant cell wall degradation
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Dilute acid pretreatment of short rotation woody and herbaceous crops
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Xylose metabolism in the anaerobic fungus Piromyces sp. strain E2 follows the bacterial pathway
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Xylose isomerase from polycentric fungus Orpinomyces: gene sequencing, cloning, and expression in Saccharomyces cerevisiae for bioconversion of xylose to ethanol
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Molecular cloning and characterization of a bifunctional xylanolytic enzyme from Neocallimastix patriciarum
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Isolation of Extremely AT-Rich Genomic DNA and Analysis of Genes Encoding Carbohydrate-Degrading Enzymes from Orpinomyces sp. Strain PC-2
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Molecular characterization of xyn3, a member of the endoxylanase multigene family of the rumen anaerobic fungus Neocallimastix frontalis
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Features of promising technologies for pretreatment of lignocellulosic biomass
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Ethanol production through simultaneous saccharification and fermentation of switchgrass using Saccharomyces cerevisiae D5A and thermotolerant Kluyveromyces marxianus IMB strains
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Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: A review
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A higher-level phylogenetic classification of the Fungi
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A serpin in the cellulosome of the anaerobic fungus Piromyces sp. strain E2
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A highly expressed family 1 β-glucosidase with transglycosylation capacity from the anaerobic fungus Piromyces sp. E2
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Cel6A, a major exoglucanase from the cellulosome of the anaerobic fungi Piromyces sp. E2 and Piromyces equi
inferredcites →https://doi.org/10.1016/s0378-1119(00)00028-7openalex-snapshot
Isolation and analysis of two cellulase cDNAs from Orpinomyces joyonii
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Genomic DNA analysis of genes encoding (hemi-)cellulolytic enzymes of the anaerobic fungus Piromyces sp. E2
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Sodium Hydroxide Pretreatment of Switchgrass for Ethanol Production
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Accurate whole human genome sequencing using reversible terminator chemistry
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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SignalP 4.0: discriminating signal peptides from transmembrane regions
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RNA-Seq: a revolutionary tool for transcriptomics
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Extreme genome reduction in symbiotic bacteria
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Prochlorococcus: the structure and function of collective diversity
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Characterization of a cellulosome dockerin domain from the anaerobic fungus Piromyces equi.
inferredcites →https://doi.org/10.1042/bj20011866openalex-snapshot
An intron-containing glycoside hydrolase family 9 cellulase gene encodes the dominant 90 kDa component of the cellulosome of the anaerobic fungus Piromyces sp. strain E2
inferredcites →https://doi.org/10.1042/bj20021767openalex-snapshot
beta-Glucosidase in cellulosome of the anaerobic fungus Piromyces sp. strain E2 is a family 3 glycoside hydrolase
inferredcites →https://doi.org/10.1042/bj2360729openalex-snapshot
Hydrogenosomes in the rumen fungus Neocallimastix patriciarum
inferredcites →https://doi.org/10.1042/bj2970359openalex-snapshot
Intronless celB from the anaerobic fungus Neocallimastix patriciarum encodes a modular family A endoglucanase
inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03912.xopenalex-snapshot
The anaerobic chytridiomycete fungus Piromyces sp. E2 produces ethanol via pyruvate:formate lyase and an alcohol dehydrogenase E
inferredcites →https://doi.org/10.1073/pnas.1002257107openalex-snapshot
Ancient origin of the integrin-mediated adhesion and signaling machinery
inferredcites →https://doi.org/10.1073/pnas.1104160108openalex-snapshot
Microaerobic steroid biosynthesis and the molecular fossil record of Archean life
inferredcites →https://doi.org/10.1073/pnas.1105776108openalex-snapshot
Insights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components
inferredcites →https://doi.org/10.1074/jbc.270.49.29314openalex-snapshot
The Conserved Noncatalytic 40-Residue Sequence in Cellulases and Hemicellulases from Anaerobic Fungi Functions as a Protein Docking Domain
inferredcites →https://doi.org/10.1080/1042517021000024191openalex-snapshot
The Major Component of the Cellulosomes of Anaerobic Fungi from the Genus Piromyces is a Family 48 Glycoside Hydrolase
inferredcites →https://doi.org/10.1093/ajcn/25.12.1324openalex-snapshot
Commentary on the Hungate technique for culture of anaerobic bacteria
inferredcites →https://doi.org/10.1093/bioinformatics/bth315openalex-snapshot
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
inferredcites →https://doi.org/10.1093/bioinformatics/bti1018openalex-snapshot
De novo identification of repeat families in large genomes
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GMAP: a genomic mapping and alignment program for mRNA and EST sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
inferredcites →https://doi.org/10.1093/bioinformatics/btn548openalex-snapshot
Aggressive assembly of pyrosequencing reads with mates
inferredcites →https://doi.org/10.1093/bioinformatics/btr507openalex-snapshot
FLASH: fast length adjustment of short reads to improve genome assemblies
inferredcites →https://doi.org/10.1093/gbe/evr124openalex-snapshot
Causes and Consequences of Genome Expansion in Fungi
inferredcites →https://doi.org/10.1093/molbev/msi057openalex-snapshot
Survey of Simple Sequence Repeats in Completed Fungal Genomes
inferredcites →https://doi.org/10.1093/nar/17.4.1327openalex-snapshot
Remarkably AT-rich genomic DNA from the anaerobic fungusNeocallimastix
inferredcites →https://doi.org/10.1093/nar/30.1.276openalex-snapshot
The Pfam Protein Families Database
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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
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The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
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LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
inferredcites →https://doi.org/10.1093/nar/gkn663openalex-snapshot
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
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The Pfam protein families database
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Energy metabolism among eukaryotic anaerobes in light of Proterozoic ocean chemistry
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The Life Cycle and Growth Kinetics of an Anaerobic Rumen Fungus
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A novel polysaccharide hydrolase cDNA (celD) from Neocallimastix patriciarum encoding three multi-functional catalytic domains with high endoglucanase, cellobiohydrolase and xylanase activities
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Primary sequence and enzymic properties of two modular endoglucanases, Cel5A and Cel45A, from the anaerobic fungus Piromyces equi The EMBL accession numbers for the sequences reported in this paper are AJ277482 and AJ277483.
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Studies on the Rumen Flagellate Neocallimastix frontalis
inferredcites →https://doi.org/10.1099/mic.0.27353-0openalex-snapshot
Molecular analysis of the anaerobic rumen fungus Orpinomyces – insights into an AT-rich genome
inferredcites →https://doi.org/10.1101/gr.074492.107openalex-snapshot
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
inferredcites →https://doi.org/10.1101/gr.772403openalex-snapshot
PANTHER: A Library of Protein Families and Subfamilies Indexed by Function
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Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
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Computational Method to Predict Mitochondrially Imported Proteins and their Targeting Sequences
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Dynamics of initial colonization of nonconserved perennial ryegrass by anaerobic fungi in the bovine rumen
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Status of the phylogenetic diversity census of ruminal microbiomes
inferredcites →https://doi.org/10.1126/science.1089370openalex-snapshot
The Origins of Genome Complexity
inferredcites →https://doi.org/10.1126/science.1162986openalex-snapshot
Real-Time DNA Sequencing from Single Polymerase Molecules
inferredcites →https://doi.org/10.1126/science.1200387openalex-snapshot
Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
inferredcites →https://doi.org/10.1126/science.1221748openalex-snapshot
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
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A Whole-Genome Assembly of Drosophila
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New approach to the cultivation of methanogenic bacteria: 2-mercaptoethanesulfonic acid (HS-CoM)-dependent growth of Methanobacterium ruminantium in a pressureized atmosphere
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Growth and fermentation of an anaerobic rumen fungus on various carbon sources and effect of temperature on development
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Influence of hydrogen-consuming bacteria on cellulose degradation by anaerobic fungi
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Solubilization of lignin by the ruminal anaerobic fungus Neocallimastix patriciarum
inferredcites →https://doi.org/10.1128/aem.62.4.1437-1440.1996openalex-snapshot
Degradation of Perennial Ryegrass Leaf and Stem Cell Walls by the Anaerobic Fungus Neocallimastix sp. Strain CS3b
inferredcites →https://doi.org/10.1128/jb.179.19.6028-6034.1997openalex-snapshot
Sequencing of a 1,3-1,4-beta-D-glucanase (lichenase) from the anaerobic fungus Orpinomyces strain PC-2: properties of the enzyme expressed in Escherichia coli and evidence that the gene has a bacterial origin
inferredcites →https://doi.org/10.1128/mmbr.05024-11openalex-snapshot
Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
inferredcites →https://doi.org/10.1139/m87-071openalex-snapshot
Polysaccharide-degrading enzymes formed by three species of anaerobic rumen fungi grown on a range of carbohydrate substrates
inferredcites →https://doi.org/10.1139/m87-072openalex-snapshot
Glycoside hydrolase enzymes present in the zoospore and vegetative growth stages of the rumen fungi Neocallimastix patriciarum, Piromonas communis, and an unidentified isolate, grown on a range of carbohydrates
inferredcites →https://doi.org/10.1139/w99-092openalex-snapshot
Characterization of aNeocallimastixpatriciarumxylanase gene and its product
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-12-323openalex-snapshot
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
inferredcites →https://doi.org/10.1186/1471-2105-7-62openalex-snapshot
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
inferredcites →https://doi.org/10.1186/1754-6834-5-24openalex-snapshot
A highly efficient β-glucosidase from the buffalo rumen fungus Neocallimastix patriciarum W5
inferredcites →https://doi.org/10.1196/annals.1419.030openalex-snapshot
The Cellulase/Hemicellulase System of the Anaerobic Fungus Orpinomyces PC‐2 and Aspects of Its Applied Use
inferredcites →https://doi.org/10.1271/bbb.62.1795openalex-snapshot
Cloning, Sequencing, and Expression of an Endoglucanase Gene from the Rumen Anaerobic Fungus Neocallimastix frontalis MCH3
inferredcites →https://doi.org/10.1371/journal.pcbi.1002195openalex-snapshot
Accelerated Profile HMM Searches
inferredcites →https://doi.org/10.1371/journal.pgen.1000549openalex-snapshot
Genomic Analysis of the Basal Lineage Fungus Rhizopus oryzae Reveals a Whole-Genome Duplication
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The Core Components of Organelle Biogenesis and Membrane Transport in the Hydrogenosomes of Trichomonas vaginalis
inferredcites →https://doi.org/10.1371/journal.ppat.1002338openalex-snapshot
Genomic Transition to Pathogenicity in Chytrid Fungi
inferredcites →https://doi.org/10.1385/abab:108:1-3:775openalex-snapshot
CelF of Orpinomyces PC-2 Has an Intron and Encodes a Cellulase (CelF) Containing a Carbohydrate-Binding Module
inferredcites →https://doi.org/10.1385/abab:113:1-3:233openalex-snapshot
Properties of a Recombinant β-Glucosidase from Polycentric Anaerobic Fungus Orpinomyces PC-2 and Its Application for Cellulose Hydrolysis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Accelerated biogas production from lignocellulosic biomass after pre-treatment with Neocallimastix frontalis
inferred← citeshttps://doi.org/10.1016/j.biortech.2019.01.024openalex-snapshot
Fungal bioaugmentation of anaerobic digesters fed with lignocellulosic biomass: What to expect from anaerobic fungus Orpinomyces sp.
inferred← citeshttps://doi.org/10.1016/j.biortech.2019.122687openalex-snapshot
Employing anaerobic fungi in biogas production: challenges & opportunities
inferred← citeshttps://doi.org/10.1016/j.biortech.2024.131544openalex-snapshot
Recent advances in methane and hydrogen production from lignocellulosic degradation with anaerobic fungi
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2014.12.002openalex-snapshot
Lignocellulosic ethanol: Technology design and its impact on process efficiency
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2024.108308openalex-snapshot
Rumen microbes, enzymes, metabolisms, and application in lignocellulosic waste conversion - A comprehensive review
inferred← citeshttps://doi.org/10.1016/j.carbpol.2020.117388openalex-snapshot
Pectin in diet: Interactions with the human microbiome, role in gut homeostasis, and nutrient-drug interactions
inferred← citeshttps://doi.org/10.1016/j.cbd.2025.101457openalex-snapshot
Silymarin mediates the gut-liver axis pathway to alleviate Carassius auratus hepatic lipid metabolism disorders caused by carbonate exposure
inferred← citeshttps://doi.org/10.1016/j.cofs.2014.10.001openalex-snapshot
Enzymatic hydrolysis of lignocellulosic biomass: converting food waste in valuable products
inferred← citeshttps://doi.org/10.1016/j.copbio.2014.01.007openalex-snapshot
Extracting data from the muck: deriving biological insight from complex microbial communities and non-model organisms with next generation sequencing
inferred← citeshttps://doi.org/10.1016/j.copbio.2019.03.013openalex-snapshot
Leveraging anaerobic fungi for biotechnology
inferred← citeshttps://doi.org/10.1016/j.copbio.2019.08.015openalex-snapshot
Nature’s recyclers: anaerobic microbial communities drive crude biomass deconstruction
inferred← citeshttps://doi.org/10.1016/j.copbio.2021.08.010openalex-snapshot
Identification of novel membrane proteins for improved lignocellulose conversion
inferred← citeshttps://doi.org/10.1016/j.cub.2016.08.025openalex-snapshot
The Earliest Stages of Mitochondrial Adaptation to Low Oxygen Revealed in a Novel Rhizarian
inferred← citeshttps://doi.org/10.1016/j.cub.2021.01.001openalex-snapshot
The actin networks of chytrid fungi reveal evolutionary loss of cytoskeletal complexity in the fungal kingdom
inferred← citeshttps://doi.org/10.1016/j.enzmictec.2019.109410openalex-snapshot
Enzymatic reactions in the production of biomethane from organic waste
inferred← citeshttps://doi.org/10.1016/j.fbr.2018.09.001openalex-snapshot
Origin of fungal biomass degrading enzymes: Evolution, diversity and function of enzymes of early lineage fungi
inferred← citeshttps://doi.org/10.1016/j.fgb.2024.103897openalex-snapshot
Anaerobic fungi contain abundant, diverse, and transcriptionally active Long Terminal Repeat retrotransposons
inferred← citeshttps://doi.org/10.1016/j.freeradbiomed.2021.04.013openalex-snapshot
Distribution of methionine sulfoxide reductases in fungi and conservation of the free-methionine- R -sulfoxide reductase in multicellular eukaryotes
inferred← citeshttps://doi.org/10.1016/j.funbio.2015.04.005openalex-snapshot
A new anaerobic fungus (Oontomyces anksri gen. nov., sp. nov.) from the digestive tract of the Indian camel (Camelus dromedarius)
inferred← citeshttps://doi.org/10.1016/j.funbio.2020.12.001openalex-snapshot
On the TPPP-like proteins of flagellated fungi
inferred← citeshttps://doi.org/10.1016/j.funbio.2026.101872openalex-snapshot
Diversity and community structure of anaerobic gut fungi in camel feces
inferred← citeshttps://doi.org/10.1016/j.funeco.2019.03.007openalex-snapshot
Community dynamics of Neocallimastigomycetes in the rumen of yak feeding on wheat straw revealed by different primer sets
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e41124openalex-snapshot
Anaerobic co-digestion of khat waste and cow dung for enhanced bio-methane production potential: Substrates conversion rate
inferred← citeshttps://doi.org/10.1016/j.jbiosc.2025.11.004openalex-snapshot
Recovering genomes from uncultured fungi with single-cell genomics
inferred← citeshttps://doi.org/10.1016/j.mec.2019.e00091openalex-snapshot
Heterologous transporters from anaerobic fungi bolster fluoride tolerance in Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.1016/j.mec.2019.e00107openalex-snapshot
Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi
inferred← citeshttps://doi.org/10.1016/j.mimet.2014.06.010openalex-snapshot
Evaluating the utility of hydrothermolysis pretreatment approaches in enhancing lignocellulosic biomass degradation by the anaerobic fungus Orpinomyces sp. strain C1A
inferred← citeshttps://doi.org/10.1016/j.mimet.2016.05.017openalex-snapshot
Development of three specific PCR-based tools to determine quantity, cellulolytic transcriptional activity and phylogeny of anaerobic fungi
inferred← citeshttps://doi.org/10.1016/j.mimet.2016.05.019openalex-snapshot
A fast and reliable procedure for spore collection from anaerobic fungi: Application for RNA uptake and long-term storage of isolates
inferred← citeshttps://doi.org/10.1016/j.plantsci.2015.02.010openalex-snapshot
Destructuring plant biomass: Focus on fungal and extremophilic cell wall hydrolases
inferred← citeshttps://doi.org/10.1016/j.rser.2020.110335openalex-snapshot
Promising biological conversion of lignocellulosic biomass to renewable energy with rumen microorganisms: A comprehensive review
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2021.152773openalex-snapshot
RETRACTED: Biotechnological potential of rumen microbiota for sustainable bioconversion of lignocellulosic waste to biofuels and value-added products
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.154521openalex-snapshot
A comprehensive review on anaerobic fungi applications in biofuels production
inferred← citeshttps://doi.org/10.1016/j.tibs.2016.05.007openalex-snapshot
The Enigmatic Universe of the Herbivore Gut
inferred← citeshttps://doi.org/10.1016/j.ymben.2017.09.008openalex-snapshot
The importance of sourcing enzymes from non-conventional fungi for metabolic engineering and biomass breakdown
inferred← citeshttps://doi.org/10.1017/s1751731119000752openalex-snapshot
Invited review: Application of meta-omics to understand the dynamic nature of the rumen microbiome and how it responds to diet in ruminants
inferred← citeshttps://doi.org/10.1021/acssynbio.2c00502openalex-snapshot
A Genetic Engineering Toolbox for the Lignocellulolytic Anaerobic Gut Fungus Neocallimastix frontalis
inferred← citeshttps://doi.org/10.1021/acssynbio.9b00271openalex-snapshot
Top-Down Enrichment Guides in Formation of Synthetic Microbial Consortia for Biomass Degradation
inferred← citeshttps://doi.org/10.1038/ismej.2014.141openalex-snapshot
Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum ‘Diapherotrites’
inferred← citeshttps://doi.org/10.1038/nmicrobiol.2017.87openalex-snapshot
A parts list for fungal cellulosomes revealed by comparative genomics
inferred← citeshttps://doi.org/10.1038/s41396-020-00769-xopenalex-snapshot
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
inferred← citeshttps://doi.org/10.1038/s41396-023-01407-yopenalex-snapshot
Metabolic influence of core ciliates within the rumen microbiome
inferred← citeshttps://doi.org/10.1038/s41467-021-25308-wopenalex-snapshot
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
inferred← citeshttps://doi.org/10.1038/s41467-023-39508-zopenalex-snapshot
Patterns and determinants of the global herbivorous mycobiome
inferred← citeshttps://doi.org/10.1038/s41467-024-47047-4openalex-snapshot
Anaerobic fungi in the tortoise alimentary tract illuminate early stages of host-fungal symbiosis and Neocallimastigomycota evolution
inferred← citeshttps://doi.org/10.1038/s41598-017-00258-wopenalex-snapshot
Distribution and diversity of enzymes for polysaccharide degradation in fungi
inferred← citeshttps://doi.org/10.1038/s41598-018-24914-xopenalex-snapshot
Origin and evolution of fungal HECT ubiquitin ligases
inferred← citeshttps://doi.org/10.1038/s41598-024-67510-yopenalex-snapshot
Characteristics of Corynespora cassiicola, the causal agent of tobacco Corynespora leaf spot, revealed by genomic and metabolic phenomic analysis
inferred← citeshttps://doi.org/10.1038/srep06892openalex-snapshot
Survival of the anaerobic fungus Orpinomyces sp. strain C1A after prolonged air exposure
inferred← citeshttps://doi.org/10.1038/srep29217openalex-snapshot
Defined enzyme cocktail from the anaerobic fungus Orpinomyces sp. strain C1A effectively releases sugars from pretreated corn stover and switchgrass
inferred← citeshttps://doi.org/10.1039/d5se00240kopenalex-snapshot
From gut to green energy: the essential role of anaerobic fungi in sustainable biofuel production
inferred← citeshttps://doi.org/10.1073/pnas.1711939114openalex-snapshot
A genome Tree of Life for the Fungi kingdom
inferred← citeshttps://doi.org/10.1073/pnas.2105225118openalex-snapshot
A squalene–hopene cyclase in Schizosaccharomyces japonicus represents a eukaryotic adaptation to sterol-limited anaerobic environments
inferred← citeshttps://doi.org/10.1080/00275514.2017.1317190openalex-snapshot
Pecoramyces ruminantium, gen. nov., sp. nov., an anaerobic gut fungus from the feces of cattle and sheep
inferred← citeshttps://doi.org/10.1080/00275514.2018.1465773openalex-snapshot
Anaeromyces contortus, sp. nov., a new anaerobic gut fungal species (Neocallimastigomycota) isolated from the feces of cow and goat
inferred← citeshttps://doi.org/10.1080/00275514.2018.1466610openalex-snapshot
Feramyces austinii, gen. nov., sp. nov., an anaerobic gut fungus from rumen and fecal samples of wild Barbary sheep and fallow deer
inferred← citeshttps://doi.org/10.1080/00275514.2019.1696619openalex-snapshot
Seven new Neocallimastigomycota genera from wild, zoo-housed, and domesticated herbivores greatly expand the taxonomic diversity of the phylum
inferred← citeshttps://doi.org/10.1080/00275514.2025.2549866openalex-snapshot
Piromyces struthionis , sp. nov., a new anaerobic gut fungus from the feces of ostriches
inferred← citeshttps://doi.org/10.1080/02648725.2022.2082223openalex-snapshot
An insight into the principles of lignocellulosic biomass-based zero-waste biorefineries: a green leap towards imperishable energy-based future
inferred← citeshttps://doi.org/10.1080/21655979.2015.1060379openalex-snapshot
Driving biomass breakdown through engineered cellulosomes
inferred← citeshttps://doi.org/10.1080/21655979.2020.1837459openalex-snapshot
Effects of enzyme + bacteria treatment on growth performance, rumen bacterial diversity, KEGG pathways, and the CAZy spectrum of Tan sheep
inferred← citeshttps://doi.org/10.1093/bfgp/elu028openalex-snapshot
(Post-)Genomics approaches in fungal research
inferred← citeshttps://doi.org/10.1093/bfgp/elu032openalex-snapshot
Fungal cellulose degradation by oxidative enzymes: from dysfunctional GH61 family to powerful lytic polysaccharide monooxygenase family
inferred← citeshttps://doi.org/10.1093/database/bav008openalex-snapshot
mycoCLAP, the database for characterized lignocellulose-active proteins of fungal origin: resource and text mining curation support
inferred← citeshttps://doi.org/10.1093/femsec/fiaf108openalex-snapshot
Anaerobic fungi: effective warriors in lignocellulosic biomass degradation and fermentation
inferred← citeshttps://doi.org/10.1093/femsmc/xtae025openalex-snapshot
Exploring near-infrared spectroscopy and hyperspectral imaging as novel characterization methods for anaerobic gut fungi
inferred← citeshttps://doi.org/10.1093/femsre/fuz007openalex-snapshot
Islands in the stream: from individual to communal fiber degradation in the rumen ecosystem
inferred← citeshttps://doi.org/10.1093/g3journal/jkaf137openalex-snapshot
Genomic and transcriptomic characterization of carbohydrate-active enzymes in the anaerobic fungus Neocallimastix cameroonii var. constans
inferred← citeshttps://doi.org/10.1098/rstb.2014.0326openalex-snapshot
Diversity and origins of anaerobic metabolism in mitochondria and related organelles
inferred← citeshttps://doi.org/10.1099/ijsem.0.004832openalex-snapshot
Paucimyces polynucleatus gen. nov, sp. nov., a novel polycentric genus of anaerobic gut fungi from the faeces of a wild blackbuck antelope
inferred← citeshttps://doi.org/10.1099/ijsem.0.005322openalex-snapshot
Taxonomy of the anaerobic gut fungi (Neocallimastigomycota): a review of classification criteria and description of current taxa
inferred← citeshttps://doi.org/10.1099/ijsem.0.005735openalex-snapshot
Phylogenomic analysis of the Neocallimastigomycota: proposal of Caecomycetaceae fam. nov., Piromycetaceae fam. nov., and emended description of the families Neocallimastigaceae and Anaeromycetaceae
inferred← citeshttps://doi.org/10.1099/mgen.0.000150openalex-snapshot
Plasmodium parasites of birds have the most AT-rich genes of eukaryotes
inferred← citeshttps://doi.org/10.1099/mgen.0.001845openalex-snapshot
Eukaryotic metagenome-assembled genomes recovered from deep metagenomic sequencing of the seagrass, Zostera marina, include a novel chytrid in the order Lobulomycetales
inferred← citeshttps://doi.org/10.1101/2020.10.15.341461openalex-snapshot
Gut Fungi Possess a Conserved Toxin Immunity Gene of Bacterial Origin
inferred← citeshttps://doi.org/10.1101/2022.08.19.504535openalex-snapshot
Ecology drives the observed spectrum of hydrophobin protein diversity across Kingdom Fungi
inferred← citeshttps://doi.org/10.1101/2024.11.06.622210openalex-snapshot
Lignocellulose Degradation in Bacteria and Fungi for Biomass Conversion
inferred← citeshttps://doi.org/10.1101/2025.02.11.637735openalex-snapshot
Eukaryotic MAGs recovered from deep metagenomic sequencing of the seagrass, Zostera marina, include a novel chytrid in the order Lobulomycetales
inferred← citeshttps://doi.org/10.1101/2025.11.01.681922openalex-snapshot
Comprehensive OrgDb Packages for Fungal Comparative Genomics: MycoCosm-Derived Standardized GO and InterPro Annotations Across Five Major Phyla
inferred← citeshttps://doi.org/10.1101/642694openalex-snapshot
Seven new Neocallimastigomycota genera from fecal samples of wild, zoo-housed, and domesticated herbivores: Description of Ghazallomyces constrictus gen. nov., sp. nov., Aklioshbomyces papillarum gen. nov., sp. nov., Agriosomyces longus gen. nov., sp. nov., Capellomyces foraminis gen. nov., sp.…
inferred← citeshttps://doi.org/10.1111/1462-2920.15164openalex-snapshot
Assessing anaerobic gut fungal diversity in herbivores using D1 / D2 large ribosomal subunit sequencing and multi‐year isolation
inferred← citeshttps://doi.org/10.1111/1574-6941.12383openalex-snapshot
Anaerobic fungi (phylum Neocallimastigomycota ): advances in understanding their taxonomy, life cycle, ecology, role and biotechnological potential
inferred← citeshttps://doi.org/10.1111/brv.12550openalex-snapshot
Fungal evolution: diversity, taxonomy and phylogeny of the Fungi
inferred← citeshttps://doi.org/10.1126/science.aad1431openalex-snapshot
Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes
inferred← citeshttps://doi.org/10.1128/9781555819583.ch1openalex-snapshot
The Fungal Tree of Life: From Molecular Systematics to Genome-Scale Phylogenies
inferred← citeshttps://doi.org/10.1128/9781555819583.ch18openalex-snapshot
Key Ecological Roles for Zoosporic True Fungi in Aquatic Habitats
inferred← citeshttps://doi.org/10.1128/aem.00672-20openalex-snapshot
Squalene-Tetrahymanol Cyclase Expression Enables Sterol-Independent Growth of Saccharomyces cerevisiae
inferred← citeshttps://doi.org/10.1128/aem.00988-19openalex-snapshot
Horizontal Gene Transfer as an Indispensable Driver for Evolution of Neocallimastigomycota into a Distinct Gut-Dwelling Fungal Lineage
inferred← citeshttps://doi.org/10.1128/aem.01492-23openalex-snapshot
Diversity and community structure of anaerobic gut fungi in the rumen of wild and domesticated herbivores
inferred← citeshttps://doi.org/10.1128/aem.03682-14openalex-snapshot
Metatranscriptomic Analyses of Plant Cell Wall Polysaccharide Degradation by Microorganisms in the Cow Rumen
inferred← citeshttps://doi.org/10.1128/mbio.00832-21openalex-snapshot
Cellulosome Localization Patterns Vary across Life Stages of Anaerobic Fungi
inferred← citeshttps://doi.org/10.1128/mbio.00967-21openalex-snapshot
Identification of Oxygen-Independent Pathways for Pyridine Nucleotide and Coenzyme A Synthesis in Anaerobic Fungi by Expression of Candidate Genes in Yeast
inferred← citeshttps://doi.org/10.1128/mbio.01643-26openalex-snapshot
The anaerobic fungus Caecomyces churrovis produces H 2 via a non-bifurcating NADH-dependent enzyme complex
inferred← citeshttps://doi.org/10.1128/mbio.03512-21openalex-snapshot
Disentangling the Evolutionary History of Feo, the Major Ferrous Iron Transport System in Bacteria
inferred← citeshttps://doi.org/10.1128/microbiolspec.funk-0038-2016openalex-snapshot
Key Ecological Roles for Zoosporic True Fungi in Aquatic Habitats
inferred← citeshttps://doi.org/10.1128/microbiolspec.funk-0053-2016openalex-snapshot
The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies
inferred← citeshttps://doi.org/10.1128/mmbr.00041-22openalex-snapshot
Enzyme Discovery in Anaerobic Fungi (Neocallimastigomycetes) Enables Lignocellulosic Biorefinery Innovation
inferred← citeshttps://doi.org/10.1128/msystems.00002-21openalex-snapshot
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
inferred← citeshttps://doi.org/10.1128/msystems.00247-19openalex-snapshot
Molecular Dating of the Emergence of Anaerobic Rumen Fungi and the Impact of Laterally Acquired Genes
inferred← citeshttps://doi.org/10.1134/s0003683820070054openalex-snapshot
Expression of the Xylanase Gene from Pyromyces finnis in Pichia pastoris and Characterization of the Recombinant Protein
inferred← citeshttps://doi.org/10.1134/s0003683823030043openalex-snapshot
A Review on Rumen Anaerobic Fungi: Current Understanding on Carbohydrate Fermentation and Roughages Digestion in Ruminants
inferred← citeshttps://doi.org/10.1134/s0003683824605389openalex-snapshot
Production and Partial Characterisation of Bifunctional Cellulase Genes of Anaerobic Gut Fungus Orpinomyces sp. GMLF19
inferred← citeshttps://doi.org/10.1139/cjas-2019-0024openalex-snapshot
Fibre digestion by rumen microbiota — a review of recent metagenomic and metatranscriptomic studies
inferred← citeshttps://doi.org/10.1145/2484762.2484832openalex-snapshot
Enabling large-scale next-generation sequence assembly with Blacklight
inferred← citeshttps://doi.org/10.1146/annurev-animal-021022-030040openalex-snapshot
Rumen-Targeted Mining of Enzymes for Bioenergy Production
inferred← citeshttps://doi.org/10.1146/annurev-animal-022114-110705openalex-snapshot
The Early Impact of Genomics and Metagenomics on Ruminal Microbiology
inferred← citeshttps://doi.org/10.1146/annurev-biochem-060614-034439openalex-snapshot
Cellulose Degradation by Polysaccharide Monooxygenases
inferred← citeshttps://doi.org/10.1146/annurev-chembioeng-060718-030340openalex-snapshot
Harnessing Nature's Anaerobes for Biotechnology and Bioprocessing
inferred← citeshttps://doi.org/10.11606/t.11.2016.tde-07062016-171940openalex-snapshot
Dinâmica do microbioma ruminal de ovinos (Ovis aries) e sua relação com a degradação de biomassa
inferred← citeshttps://doi.org/10.11606/t.11.2018.tde-01082018-110114openalex-snapshot
Metagenoma do microbioma do rúmen de ovinos e prospecção de genes degradadores de biomassa vegetal
inferred← citeshttps://doi.org/10.1186/1471-2164-15-699openalex-snapshot
Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes
inferred← citeshttps://doi.org/10.1186/s12934-016-0611-7openalex-snapshot
Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
inferred← citeshttps://doi.org/10.1186/s12934-022-01767-8openalex-snapshot
Oxidative cleavage of cellulose in the horse gut
inferred← citeshttps://doi.org/10.1186/s13068-015-0390-0openalex-snapshot
Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A
inferred← citeshttps://doi.org/10.1186/s13068-017-0997-4openalex-snapshot
Transcriptomic characterization of Caecomyces churrovis: a novel, non-rhizoid-forming lignocellulolytic anaerobic fungus
inferred← citeshttps://doi.org/10.1186/s13068-021-02083-wopenalex-snapshot
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates
inferred← citeshttps://doi.org/10.1186/s13568-018-0680-6openalex-snapshot
Metagenome sequencing to analyze the impacts of thiamine supplementation on ruminal fungi in dairy cows fed high-concentrate diets
inferred← citeshttps://doi.org/10.1186/s40168-018-0421-8openalex-snapshot
“Candidatus Paraporphyromonas polyenzymogenes” encodes multi-modular cellulases linked to the type IX secretion system
inferred← citeshttps://doi.org/10.1186/s40168-025-02201-yopenalex-snapshot
Comparative analysis of rumen metagenomes with dietary supplementation of 3-nitrooxypropanol revealed divergent modes of action in hydrogen metabolism and reductant pathways between beef and dairy cattle
inferred← citeshttps://doi.org/10.1186/s40643-019-0264-6openalex-snapshot
Systematic review of publicly available non-Dikarya fungal proteomes for understanding their plant biomass-degrading and bioremediation potentials
inferred← citeshttps://doi.org/10.1186/s40694-021-00117-4openalex-snapshot
Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis
inferred← citeshttps://doi.org/10.1186/s40694-026-00224-0openalex-snapshot
Beyond carbon dioxide: decoupling headspace and buffering reveals a bicarbonate requirement for anaerobic gut fungi growth
inferred← citeshttps://doi.org/10.1186/s42523-022-00224-6openalex-snapshot
Understanding the microbial fibre degrading communities & processes in the equine gut
inferred← citeshttps://doi.org/10.1186/s42523-026-00584-3openalex-snapshot
The price of survival: comparative adaptation to high altitudes between yaks and cattle
inferred← citeshttps://doi.org/10.13057/biodiv/d231243openalex-snapshot
Molecular identification of anaerobic fungi isolated from buffalo rumen with their growth rate, cellulase enzyme activity, and fermentation products characteristics
inferred← citeshttps://doi.org/10.13140/rg.2.2.16651.49446openalex-snapshot
Conceptual and Empirical Investigations of Eukaryotic Transposable Element Evolution
inferred← citeshttps://doi.org/10.1371/journal.pone.0163553openalex-snapshot
Insights into the Utility of the Focal Adhesion Scaffolding Proteins in the Anaerobic Fungus Orpinomyces sp. C1A
inferred← citeshttps://doi.org/10.1371/journal.pone.0256321openalex-snapshot
Environmental factors shaping bacterial, archaeal and fungal community structure in hydrothermal sediments of Guaymas Basin, Gulf of California
inferred← citeshttps://doi.org/10.15232/s1080-7446(15)30076-0openalex-snapshot
REVIEW: The rumen microbiome: Composition, abundance, diversity, and new investigative tools
inferred← citeshttps://doi.org/10.1534/g3.117.040691openalex-snapshot
Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure
inferred← citeshttps://doi.org/10.1534/g3.120.401516openalex-snapshot
Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus
inferred← citeshttps://doi.org/10.1590/1678-4324-2017160462openalex-snapshot
Coexpression of rumen fungal xylanase and bifunctional cellulase genes in Escherichia coli
inferred← citeshttps://doi.org/10.17520/biods.2018201openalex-snapshot
Analysis of prospective microbiology research using third-generation sequencing technology
inferred← citeshttps://doi.org/10.18174/476563openalex-snapshot
From metagenome to gene : Identification of the first Synchytrium endobioticum effector through comparative genomics
inferred← citeshttps://doi.org/10.21203/rs.3.rs-6049434/v1openalex-snapshot
Biogas Production and Nutrient Dynamics in Digestate from Co-Digestion of Food Waste and Banana Stems
inferred← citeshttps://doi.org/10.21203/rs.3.rs-736962/v1openalex-snapshot
Characteristic of a GH10 Xylanase From The Anaerobic Rumen Fungus Anaeromyces Robustus and Application in Bread Making
inferred← citeshttps://doi.org/10.2139/ssrn.6434199openalex-snapshot
DIVERGENT TRAJECTORIES FOR ANAEROBIC MITOCHONDRIAL EVOLUTION IN BREVIATE PROTISTS
inferred← citeshttps://doi.org/10.21448/ijsm.1075030openalex-snapshot
Carbohydrate active enzyme system in rumen fungi: a review
inferred← citeshttps://doi.org/10.21519/0234-2758-2019-35-4-24-32openalex-snapshot
Expression of Xylanase Gene from Pyromyces finnis in Pichia pastoris and Characterization of Recombinant Protein
inferred← citeshttps://doi.org/10.2527/af.2016-0019openalex-snapshot
Mining the rumen for fibrolytic feed enzymes
inferred← citeshttps://doi.org/10.2527/jas.2014-8754openalex-snapshot
RUMINANT NUTRITION SYMPOSIUM: How to use data on the rumen microbiome to improve our understanding of ruminant nutrition1,2
inferred← citeshttps://doi.org/10.29132/ijpas.1664332openalex-snapshot
Dağ Keçilerinden İzole Edilen Anaerobik Gut Fungusların Moleküler Tanımlanması
inferred← citeshttps://doi.org/10.3168/jds.2024-25713openalex-snapshot
International Symposium on Ruminant Physiology: Rumen fungi, archaea, and their interactions
inferred← citeshttps://doi.org/10.33073/pjm-2019-050openalex-snapshot
The Composition of Fungal Communities in the Rumen of Gayals ( Bos frontalis ), Yaks ( Bos grunniens ), and Yunnan and Tibetan Yellow Cattle ( Bos taurs )
inferred← citeshttps://doi.org/10.33284/2658-3135-103-4-174openalex-snapshot
The main representatives of the rumen microbiome (review)
inferred← citeshttps://doi.org/10.3389/ffunb.2021.692804openalex-snapshot
Characterization and Phylogenetic Analysis of a Novel GH43 β-Xylosidase From Neocallimastix californiae
inferred← citeshttps://doi.org/10.3389/ffunb.2021.708358openalex-snapshot
A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction
inferred← citeshttps://doi.org/10.3389/ffunb.2023.1171100openalex-snapshot
High-quality RNA extraction and the regulation of genes encoding cellulosomes are correlated with growth stage in anaerobic fungi
inferred← citeshttps://doi.org/10.3389/fimmu.2019.00666openalex-snapshot
Oral Administration of Compound Probiotics Improved Canine Feed Intake, Weight Gain, Immunity and Intestinal Microbiota
inferred← citeshttps://doi.org/10.3389/fmicb.2017.00067openalex-snapshot
Metatranscriptomics Reveals the Active Bacterial and Eukaryotic Fibrolytic Communities in the Rumen of Dairy Cow Fed a Mixed Diet
inferred← citeshttps://doi.org/10.3389/fmicb.2017.00635openalex-snapshot
Utilizing Anaerobic Fungi for Two-stage Sugar Extraction and Biofuel Production from Lignocellulosic Biomass
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