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DIVERGENT TRAJECTORIES FOR ANAEROBIC MITOCHONDRIAL EVOLUTION IN BREVIATE PROTISTS

https://doi.org/10.2139/ssrn.6434199
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MICOS and the mitochondrial inner membrane morphology – when things get out of shape
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An Overview on Fe–S Protein Biogenesis from Prokaryotes to Eukaryotes
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Fe–S cluster assembly in the supergroup Excavata
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Ancient Homology of the Mitochondrial Contact Site and Cristae Organizing System Points to an Endosymbiotic Origin of Mitochondrial Cristae
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A Eukaryote without a Mitochondrial Organelle
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The Earliest Stages of Mitochondrial Adaptation to Low Oxygen Revealed in a Novel Rhizarian
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The Origin and Diversification of Mitochondria
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The Diverged Trypanosome MICOS Complex as a Hub for Mitochondrial Cristae Shaping and Protein Import
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Genomics of New Ciliate Lineages Provides Insight into the Evolution of Obligate Anaerobiosis
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The flagellar apparatus of Breviata anathema, a eukaryote without a clear supergroup affinity
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Subulatomonas tetraspora nov. gen. nov. sp. is a Member of a Previously Unrecognized Major Clade of Eukaryotes
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Iron–sulfur-protein biogenesis in eukaryotes
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Environmental Breviatea harbour mutualistic Arcobacter epibionts
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Full-length transcriptome assembly from RNA-Seq data without a reference genome
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Hydrogenosomes in the diplomonad Spironucleus salmonicida
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Locating proteins in the cell using TargetP, SignalP and related tools
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Extreme mitochondrial reduction in a novel group of free-living metamonads
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An early origin of iron–sulfur cluster biosynthesis machineries before Earth oxygenation
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Hemimastigophora is a novel supra-kingdom-level lineage of eukaryotes
inferredcites →https://doi.org/10.1038/s41586-024-07487-wopenalex-snapshot
Accurate structure prediction of biomolecular interactions with AlphaFold 3
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Fast and accurate protein structure search with Foldseek
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Mitochondrial-type assembly of FeS centers in the hydrogenosomes of the amitochondriate eukaryote Trichomonas vaginalis
inferredcites →https://doi.org/10.1073/pnas.0907106106openalex-snapshot
Mitosomes in Entamoeba histolytica contain a sulfate activation pathway
inferredcites →https://doi.org/10.1073/pnas.1116067109openalex-snapshot
Evolution of Fe/S cluster biogenesis in the anaerobic parasite Blastocystis
inferredcites →https://doi.org/10.1073/pnas.1219590110openalex-snapshot
NIF-type iron-sulfur cluster assembly system is duplicated and distributed in the mitochondria and cytosol of Mastigamoeba balamuthi
inferredcites →https://doi.org/10.1074/jbc.m110.152447openalex-snapshot
Cysteine Is Not the Sulfur Source for Iron-Sulfur Cluster and Methionine Biosynthesis in the Methanogenic Archaeon Methanococcus maripaludis
inferredcites →https://doi.org/10.1074/jbc.m313314200openalex-snapshot
An Intestinal Parasitic Protist, Entamoeba histolytica, Possesses a Non-redundant Nitrogen Fixation-like System for Iron-Sulfur Cluster Assembly under Anaerobic Conditions
inferredcites →https://doi.org/10.1074/mcp.m114.043083openalex-snapshot
MitoFates: Improved Prediction of Mitochondrial Targeting Sequences and Their Cleavage Sites*
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu531openalex-snapshot
AliView: a fast and lightweight alignment viewer and editor for large datasets
inferredcites →https://doi.org/10.1093/ismejo/wraf171openalex-snapshot
Anaerobic breviate protist survival in microcosms depends on microbiome metabolic function
inferredcites →https://doi.org/10.1093/molbev/msab020openalex-snapshot
The Mastigamoeba balamuthi Genome and the Nature of the Free-Living Ancestor of Entamoeba
inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
inferredcites →https://doi.org/10.1093/molbev/msp077openalex-snapshot
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msw103openalex-snapshot
Novel Hydrogenosomes in the Microaerophilic Jakobid Stygiella incarcerata
inferredcites →https://doi.org/10.1093/molbev/msy168openalex-snapshot
Fe–S Cluster Assembly in Oxymonads and Related Protists
inferredcites →https://doi.org/10.1093/molbev/msz239openalex-snapshot
Convergent Evolution of Hydrogenosomes from Mitochondria by Gene Transfer and Loss
inferredcites →https://doi.org/10.1093/nar/26.1.73openalex-snapshot
SGD: Saccharomyces Genome Database
inferredcites →https://doi.org/10.1093/nar/gkae1082openalex-snapshot
InterPro: the protein sequence classification resource in 2025
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003732openalex-snapshot
Mitochondrial Type Iron-Sulfur Cluster Assembly in the Amitochondriate Eukaryotes Trichomonas vaginalis and Giardia intestinalis, as Indicated by the Phylogeny of IscS
inferredcites →https://doi.org/10.1098/rspb.2013.1755openalex-snapshot
Phylogenomics demonstrates that breviate flagellates are related to opisthokonts and apusomonads
inferredcites →https://doi.org/10.1098/rstb.2014.0326openalex-snapshot
Diversity and origins of anaerobic metabolism in mitochondria and related organelles
inferredcites →https://doi.org/10.1099/mgen.0.001143openalex-snapshot
Comparative analysis of mitochondrion-related organelles in anaerobic amoebozoans
inferredcites →https://doi.org/10.1101/2024.03.20.586028openalex-snapshot
The minimal SUF system can substitute for the canonical iron-sulfur cluster biosynthesis systems by using inorganic sulfide as the sulfur source
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Computational Method to Predict Mitochondrially Imported Proteins and their Targeting Sequences
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Ultrastructural Description ofBreviata anathema, N. Gen., N. Sp., the Organism Previously Studied as “Mastigamoeba invertens”
inferredcites →https://doi.org/10.1111/mmi.13487openalex-snapshot
Minimal cytosolic iron‐sulfur cluster assembly machinery of Giardia intestinalis is partially associated with mitosomes
inferredcites →https://doi.org/10.1128/aem.00821-13openalex-snapshot
The Genome of the Anaerobic Fungus Orpinomyces sp. Strain C1A Reveals the Unique Evolutionary History of a Remarkable Plant Biomass Degrader
inferredcites →https://doi.org/10.1128/ec.00122-10openalex-snapshot
Sawyeria marylandensis (Heterolobosea) Has a Hydrogenosome with Novel Metabolic Properties
inferredcites →https://doi.org/10.1128/ec.00158-13openalex-snapshot
Evolution of the Cytosolic Iron-Sulfur Cluster Assembly Machinery in Blastocystis Species and Other Microbial Eukaryotes
inferredcites →https://doi.org/10.1128/jb.01582-08openalex-snapshot
The Iron-Hydrogenase of Thermotoga maritima Utilizes Ferredoxin and NADH Synergistically: a New Perspective on Anaerobic Hydrogen Production
inferredcites →https://doi.org/10.1128/mmbr.05024-11openalex-snapshot
Biochemistry and Evolution of Anaerobic Energy Metabolism in Eukaryotes
inferredcites →https://doi.org/10.1186/1471-2105-10-329openalex-snapshot
PLAST: parallel local alignment search tool for database comparison
inferredcites →https://doi.org/10.1186/1471-2148-10-210openalex-snapshot
BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
inferredcites →https://doi.org/10.1186/s12915-022-01247-wopenalex-snapshot
Anaerobic derivates of mitochondria and peroxisomes in the free-living amoeba Pelomyxa schiedti revealed by single-cell genomics
inferredcites →https://doi.org/10.1371/journal.pbio.3003223openalex-snapshot
Ancestral [Fe-S] biogenesis system SMS has a unique mechanism of cluster assembly and sulfur utilization
inferredcites →https://doi.org/10.1371/journal.pone.0017285openalex-snapshot
The Minimal Proteome in the Reduced Mitochondrion of the Parasitic Protist Giardia intestinalis
inferredcites →https://doi.org/10.1371/journal.ppat.1010773openalex-snapshot
Adaptation of the late ISC pathway in the anaerobic mitochondrial organelles of Giardia intestinalis
inferredcites →https://doi.org/10.3389/fcimb.2018.00371openalex-snapshot
The Human Gut Colonizer Blastocystis Respires Using Complex II and Alternative Oxidase to Buffer Transient Oxygen Fluctuations in the Gut
inferredcites →https://doi.org/10.7554/elife.34292openalex-snapshot
Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesis
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