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Intragenomic Heterogeneity of 16S rRNA Genes Causes Overestimation of Prokaryotic Diversity

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s00239-007-9047-3openalex-snapshot

Intragenomic 16S rDNA Divergence in Haloarcula marismortui Is an Adaptation to Different Temperatures

inferredcites →https://doi.org/10.1007/s002390010093openalex-snapshot

Gene Conversion Drives Within Genic Sequences: Concerted Evolution of Ribosomal RNA Genes in Bacteria and Archaea

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Analysis of Oral Microbiota in Children with Dental Caries by PCR-DGGE and Barcoded Pyrosequencing

inferredcites →https://doi.org/10.1016/j.mimet.2010.10.001openalex-snapshot

Novel primers for 16S rRNA-based archaeal community analyses in environmental samples

inferredcites →https://doi.org/10.1016/s0378-1097(03)00717-1openalex-snapshot

Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes

inferredcites →https://doi.org/10.1038/345060a0openalex-snapshot

Genetic diversity in Sargasso Sea bacterioplankton

inferredcites →https://doi.org/10.1038/ismej.2007.53openalex-snapshot

Pyrosequencing enumerates and contrasts soil microbial diversity

inferredcites →https://doi.org/10.1038/ismej.2010.165openalex-snapshot

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

inferredcites →https://doi.org/10.1038/ismej.2011.33openalex-snapshot

Phylogenetic analysis of the fecal microbial community in herbivorous land and marine iguanas of the Galápagos Islands using 16S rRNA-based pyrosequencing

inferredcites →https://doi.org/10.1038/ismej.2011.76openalex-snapshot

Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene

inferredcites →https://doi.org/10.1038/nmeth.1361openalex-snapshot

Accurate determination of microbial diversity from 454 pyrosequencing data

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An evaluation of terminal‐restriction fragment length polymorphism (T‐RFLP) analysis for the study of microbial community structure and dynamics

inferredcites →https://doi.org/10.1073/pnas.0605127103openalex-snapshot

Microbial diversity in the deep sea and the underexplored “rare biosphere”

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Symbiotic gut microbes modulate human metabolic phenotypes

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Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya.

inferredcites →https://doi.org/10.1093/genetics/130.3.399openalex-snapshot

Sequence heterogeneity between the two genes encoding 16S rRNA from the halophilic archaebacterium Haloarcula marismortui.

inferredcites →https://doi.org/10.1093/molbev/mss101openalex-snapshot

Large Variations in Bacterial Ribosomal RNA Genes

inferredcites →https://doi.org/10.1093/nar/24.17.3381openalex-snapshot

A quantitative map of nucleotide substitution rates in bacterial rRNA

inferredcites →https://doi.org/10.1093/nar/29.1.181openalex-snapshot

rrndb: the Ribosomal RNA Operon Copy Number Database

inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot

MUSCLE: multiple sequence alignment with high accuracy and high throughput

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RNAmmer: consistent and rapid annotation of ribosomal RNA genes

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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1099/00207713-42-1-166openalex-snapshot

How Close Is Close: 16S rRNA Sequence Identity May Not Be Sufficient To Guarantee Species Identity

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Investigating Deep Phylogenetic Relationships among Cyanobacteria and Plastids by Small Subunit rRNA Sequence Analysis1

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Structural shifts of gut microbiota as surrogate endpoints for monitoring host health changes induced by carcinogen exposure

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Diversity of the Human Intestinal Microbial Flora

inferredcites →https://doi.org/10.1128/aem.00380-09openalex-snapshot

Diet-Induced Metabolic Improvements in a Hamster Model of Hypercholesterolemia Are Strongly Linked to Alterations of the Gut Microbiota

inferredcites →https://doi.org/10.1128/aem.00592-09openalex-snapshot

Comparison of Species Richness Estimates Obtained Using Nearly Complete Fragments and Simulated Pyrosequencing-Generated Fragments in 16S rRNA Gene-Based Environmental Surveys

inferredcites →https://doi.org/10.1128/aem.01177-06openalex-snapshot

Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies

inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/aem.02953-09openalex-snapshot

Diversity of 16S rRNA Genes within Individual Prokaryotic Genomes

inferredcites →https://doi.org/10.1128/aem.59.3.695-700.1993openalex-snapshot

Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA

inferredcites →https://doi.org/10.1128/aem.59.5.1294-1302.1993openalex-snapshot

Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans

inferredcites →https://doi.org/10.1128/aem.64.10.3724-3730.1998openalex-snapshot

Bias in Template-to-Product Ratios in Multitemplate PCR

inferredcites →https://doi.org/10.1128/aem.66.4.1328-1333.2000openalex-snapshot

rRNA Operon Copy Number Reflects Ecological Strategies of Bacteria

inferredcites →https://doi.org/10.1128/aem.67.5.2354-2359.2001openalex-snapshot

DNA Extraction from Soils: Old Bias for New Microbial Diversity Analysis Methods

inferredcites →https://doi.org/10.1128/aem.70.11.6670-6677.2004openalex-snapshot

Life History Implications of rRNA Gene Copy Number in Escherichia coli

inferredcites →https://doi.org/10.1128/jb.178.19.5636-5643.1996openalex-snapshot

Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis

inferredcites →https://doi.org/10.1128/jb.179.10.3270-3276.1997openalex-snapshot

The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes

inferredcites →https://doi.org/10.1128/jb.181.17.5201-5209.1999openalex-snapshot

Distinct Types of rRNA Operons Exist in the Genome of the Actinomycete Thermomonospora chromogena and Evidence for Horizontal Transfer of an Entire rRNA Operon

inferredcites →https://doi.org/10.1128/jb.186.9.2629-2635.2004openalex-snapshot

Divergence and Redundancy of 16S rRNA Sequences in Genomes with Multiple rrn Operons

inferredcites →https://doi.org/10.1128/mr.51.2.221-271.1987openalex-snapshot

Bacterial evolution

inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot

Removing Noise From Pyrosequenced Amplicons

inferredcites →https://doi.org/10.1371/journal.pgen.1000255openalex-snapshot

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

inferredcites →https://doi.org/10.1371/journal.pone.0002836openalex-snapshot

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

inferredcites →https://doi.org/10.1517/14622416.5.4.433openalex-snapshot

Solexa Ltd

inferredcites →https://doi.org/10.2144/03344rr01openalex-snapshot

Understanding Bias in Microbial Community Analysis Techniques due to rrn Operon Copy Number Heterogeneity

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inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.160515openalex-snapshot

Manure and biochar have limited effect on lettuce leaf endophyte resistome

inferred← citeshttps://doi.org/10.1016/j.scitotenv.2023.161680openalex-snapshot

Phylogenetic diversity of stochasticity-dominated predatory myxobacterial community drives multi-nutrient cycling in typical farmland soils

inferred← citeshttps://doi.org/10.1016/j.sleep.2022.09.022openalex-snapshot

The gut microbiome and obstructive sleep apnea syndrome in children

inferred← citeshttps://doi.org/10.1016/j.soilbio.2015.05.007openalex-snapshot

Bacterial diversity in soils subjected to long-term chemical fertilization can be more stably maintained with the addition of livestock manure than wheat straw

inferred← citeshttps://doi.org/10.1016/j.soilbio.2024.109478openalex-snapshot

The coupling of carbon and energy fluxes reveals anaerobiosis in an aerobic soil incubation with a Bacillota-dominated community

inferred← citeshttps://doi.org/10.1016/j.still.2018.01.007openalex-snapshot

Restoration of nitrogen cycling community in grapevine soil by a decade of organic fertilization

inferred← citeshttps://doi.org/10.1016/j.syapm.2021.126223openalex-snapshot

Proposal of Carbonactinosporaceae fam. nov. within the class Actinomycetia. Reclassification of Streptomyces thermoautotrophicus as Carbonactinospora thermoautotrophica gen. nov., comb. nov

inferred← citeshttps://doi.org/10.1016/j.tim.2020.05.019openalex-snapshot

Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities?

inferred← citeshttps://doi.org/10.1016/j.vetmic.2026.110926openalex-snapshot

Metagenomic and metatranscriptomic analyses reveal microbial dysbiosis and bacteria-virus interactions in the lungs of Australian feedlot cattle with bovine respiratory disease

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.06.004openalex-snapshot

Widespread interspecies homologous recombination reveals reticulate evolution within the genus Streptomyces

inferred← citeshttps://doi.org/10.1021/acs.analchem.3c01654openalex-snapshot

Harnessing Variabilities in Digital Melt Curves for Accurate Identification of Bacteria

inferred← citeshttps://doi.org/10.1021/acs.est.2c09014openalex-snapshot

Competitive Reactions during Ethanol Chain Elongation Were Temporarily Suppressed by Increasing Hydrogen Partial Pressure through Methanogenesis Inhibition

inferred← citeshttps://doi.org/10.1021/acs.est.3c10418openalex-snapshot

Sulfide Toxicity as Key Control on Anaerobic Oxidation of Methane in Eutrophic Coastal Sediments

inferred← citeshttps://doi.org/10.1021/acs.jafc.7b02204openalex-snapshot

Luciferase-Zinc-Finger System for the Rapid Detection of Pathogenic Bacteria

inferred← citeshttps://doi.org/10.1021/acsfoodscitech.5c01304openalex-snapshot

Potassium Carbonate, Sodium Carbonate, and Glacial Acetic Acid Extend the Shelf Life of Wet Potato Vermicelli by Regulating the Microbial Community

inferred← citeshttps://doi.org/10.1021/acsnano.6c01132openalex-snapshot

Modular RNA:DNA Nanostructures Enable Nanopore Profiling of rRNA Processing and rRNA Variants

inferred← citeshttps://doi.org/10.1038/ismej.2015.101openalex-snapshot

Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota

inferred← citeshttps://doi.org/10.1038/s41396-019-0415-yopenalex-snapshot

Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics

inferred← citeshttps://doi.org/10.1038/s41396-020-0663-xopenalex-snapshot

Bayesian modeling reveals host genetics associated with rumen microbiota jointly influence methane emission in dairy cows

inferred← citeshttps://doi.org/10.1038/s41405-020-0035-7openalex-snapshot

Comparison of antibacterial effectiveness of three rotary file system with different geometry in infected root canals before and after instrumentation–a double-blinded randomized controlled clinical trial

inferred← citeshttps://doi.org/10.1038/s41415-026-9896-zopenalex-snapshot

Interpreting oral microbiome research in clinical dentistry: terminology, limitations and clinical implications

inferred← citeshttps://doi.org/10.1038/s41437-023-00634-5openalex-snapshot

Intragenomic rDNA variation - the product of concerted evolution, mutation, or something in between?

inferred← citeshttps://doi.org/10.1038/s41467-019-13036-1openalex-snapshot

Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis

inferred← citeshttps://doi.org/10.1038/s41467-020-17183-8openalex-snapshot

Bile acids drive the newborn’s gut microbiota maturation

inferred← citeshttps://doi.org/10.1038/s41467-020-18434-4openalex-snapshot

Bacteria are important dimethylsulfoniopropionate producers in marine aphotic and high-pressure environments

inferred← citeshttps://doi.org/10.1038/s41522-024-00490-zopenalex-snapshot

Effect of model methanogens on the electrochemical activity, stability, and microbial community structure of Geobacter spp. dominated biofilm anodes

inferred← citeshttps://doi.org/10.1038/s41564-019-0396-7openalex-snapshot

An rRNA variant to deal with stress

inferred← citeshttps://doi.org/10.1038/s41564-019-0527-1openalex-snapshot

Bacteria are important dimethylsulfoniopropionate producers in coastal sediments

inferred← citeshttps://doi.org/10.1038/s41597-025-05050-4openalex-snapshot

A curated bacterial and archaeal 16S rRNA Gene Oral Sequences dataset

inferred← citeshttps://doi.org/10.1038/s41598-017-05260-wopenalex-snapshot

Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa

inferred← citeshttps://doi.org/10.1038/s41598-017-05972-zopenalex-snapshot

Microbial turnover times in the deep seabed studied by amino acid racemization modelling

inferred← citeshttps://doi.org/10.1038/s41598-017-11779-9openalex-snapshot

Variations in oral microbiota associated with oral cancer

inferred← citeshttps://doi.org/10.1038/s41598-018-20302-7openalex-snapshot

Extracellular DNA as a genetic recorder of microbial diversity in benthic deep-sea ecosystems

inferred← citeshttps://doi.org/10.1038/s41598-018-34685-0openalex-snapshot

Long-term combined application of manure and chemical fertilizer sustained higher nutrient status and rhizospheric bacterial diversity in reddish paddy soil of Central South China

inferred← citeshttps://doi.org/10.1038/s41598-019-45995-2openalex-snapshot

Temporal Stability of the Ruminal Bacterial Communities in Beef Steers

inferred← citeshttps://doi.org/10.1038/s41598-019-47807-zopenalex-snapshot

Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs

inferred← citeshttps://doi.org/10.1038/s41598-020-70535-8openalex-snapshot

Bacterial microbiota diversity and composition in red and white wines correlate with plant-derived DNA contributions and botrytis infection

inferred← citeshttps://doi.org/10.1038/s41598-022-05723-9openalex-snapshot

Investigating the human jejunal microbiota

inferred← citeshttps://doi.org/10.1038/s41598-024-61614-1openalex-snapshot

Variation of gene ratios in mock communities constructed with purified 16S rRNA during processing

inferred← citeshttps://doi.org/10.1038/s42003-020-01468-1openalex-snapshot

Cyanobacterial blooms contribute to the diversity of antibiotic-resistance genes in aquatic ecosystems

inferred← citeshttps://doi.org/10.1038/s42003-025-08789-zopenalex-snapshot

Seasonally and niche-differentiated diversity of active, dormant and dead microbes in coastal waters and surface sediments

inferred← citeshttps://doi.org/10.1038/srep14082openalex-snapshot

Genomic insights into the taxonomic status of the Bacillus cereus group

inferred← citeshttps://doi.org/10.1039/d1ew00656hopenalex-snapshot

Fate of influent microbial populations during medium chain carboxylic acid recovery from brewery and pre-fermented food waste streams

inferred← citeshttps://doi.org/10.1039/d4va00112eopenalex-snapshot

Solving freshwater conservation challenges through next-generation sequencing approaches

inferred← citeshttps://doi.org/10.1071/an21515openalex-snapshot

The role of microbiota in animal health and productivity: misinterpretations and limitations

inferred← citeshttps://doi.org/10.1073/pnas.1711842115openalex-snapshot

The biomass distribution on Earth

inferred← citeshttps://doi.org/10.1080/00071668.2014.975781openalex-snapshot

Analysis of the intestinal bacterial microbiota in maize- or sorghum-fed broiler chickens using real-time PCR

inferred← citeshttps://doi.org/10.1080/10402381.2018.1549625openalex-snapshot

Contrasting histories of microcystin-producing cyanobacteria in two temperate lakes as inferred from quantitative sediment DNA analyses

inferred← citeshttps://doi.org/10.1080/10934529.2017.1305181openalex-snapshot

Nitrogen removal and its relationship with the nitrogen-cycle genes and microorganisms in the horizontal subsurface flow constructed wetlands with different design parameters

inferred← citeshttps://doi.org/10.1080/15320383.2025.2452866openalex-snapshot

Biochemical Combination Benefits Remediation of Soil Lead and Cadmium Pollution: Evidence from Sunflowers, Earthworms, and Soil Microorganisms

inferred← citeshttps://doi.org/10.1080/15476286.2022.2135299openalex-snapshot

Specialised ribosomes as versatile regulators of gene expression

inferred← citeshttps://doi.org/10.1086/704827openalex-snapshot

Morphology and metabarcoding: a test with stream diatoms from Mexico highlights the complementarity of identification methods

inferred← citeshttps://doi.org/10.1093/femsec/fix052openalex-snapshot

Compositional differences among female-associated and embryo-associated microbiota of the viviparous Pacific Beetle cockroach, Diploptera punctata

inferred← citeshttps://doi.org/10.1093/femsec/fiy147openalex-snapshot

A meta-analysis reveals universal gut bacterial signatures for diagnosing the incidence of shrimp disease

inferred← citeshttps://doi.org/10.1093/femsle/fnw171openalex-snapshot

Thinking beside the box: Should we care about the non-coding strand of the 16S rRNA gene?

inferred← citeshttps://doi.org/10.1093/femsre/fuy030openalex-snapshot

From hairballs to hypotheses–biological insights from microbial networks

inferred← citeshttps://doi.org/10.1093/gbe/evv143openalex-snapshot

Rare Events of Intragenus and Intraspecies Horizontal Transfer of the 16S rRNA Gene

inferred← citeshttps://doi.org/10.1093/gbe/evv234openalex-snapshot

Assessing the Unseen Bacterial Diversity in Microbial Communities

inferred← citeshttps://doi.org/10.1093/icb/icad031openalex-snapshot

The Microbiome as a Maternal Effect: A Systematic Review on Vertical Transmission of Microbiota

inferred← citeshttps://doi.org/10.1093/ismeco/ycae024openalex-snapshot

Evaluation of multiple displacement amplification for metagenomic analysis of low biomass samples

inferred← citeshttps://doi.org/10.1093/ismeco/ycae071openalex-snapshot

Swarm and UNOISE outperform DADA2 and Deblur for denoising high-diversity marine seafloor samples

inferred← citeshttps://doi.org/10.1093/ismeco/ycaf115openalex-snapshot

Validating digital polymerase chain reaction for 16S rRNA gene amplification from low biomass environmental samples

inferred← citeshttps://doi.org/10.1093/ismeco/ycag167openalex-snapshot

Characterization of the atmospheric microbiome in a semi-rural area of Central Europe using flow cytometry

inferred← citeshttps://doi.org/10.1093/ismejo/wrae027openalex-snapshot

Nitrous oxide inhibition of methanogenesis represents an underappreciated greenhouse gas emission feedback

inferred← citeshttps://doi.org/10.1093/jambio/lxaf247openalex-snapshot

Candidate biomarkers of lead-exposed municipal water biofilms provide insights into lead monitoring potential

inferred← citeshttps://doi.org/10.1093/jas/skac261openalex-snapshot

Relationship between rumen microbial differences and traits among Hu sheep, Tan sheep, and Dorper sheep

inferred← citeshttps://doi.org/10.1093/jas/skac303openalex-snapshot

Sheep fecal transplantation affects growth performance in mouse models by altering gut microbiota

inferred← citeshttps://doi.org/10.1093/jas/skad322openalex-snapshot

Relationship between hindgut microbes and feed conversion ratio in Hu sheep and microbial longitudinal development

inferred← citeshttps://doi.org/10.1098/rstb.2023.0379openalex-snapshot

Impacts of ribosomal RNA sequence variation on gene expression and phenotype

inferred← citeshttps://doi.org/10.1099/ijs.0.000316openalex-snapshot

Vibrio salilacus sp. nov., a new member of the Anguillarum clade with six alleles of the 16S rRNA gene from a saline lake

inferred← citeshttps://doi.org/10.1099/ijsem.0.001295openalex-snapshot

Tepidibacillus decaturensis sp. nov., a microaerophilic, moderately thermophilic iron-reducing bacterium isolated from 1.7 km depth groundwater

inferred← citeshttps://doi.org/10.1099/ijsem.0.001663openalex-snapshot

Halobaculum roseum sp. nov., isolated from underground salt deposits

inferred← citeshttps://doi.org/10.1099/ijsem.0.002556openalex-snapshot

Raineya orbicola gen. nov., sp. nov. a slightly thermophilic bacterium of the phylum Bacteroidetes and the description of Raineyaceae fam. nov.

inferred← citeshttps://doi.org/10.1099/ijsem.0.002613openalex-snapshot

Paenibacillus translucens sp. nov., isolated from tidal flat sediment

inferred← citeshttps://doi.org/10.1099/ijsem.0.003211openalex-snapshot

Haloarcula sebkhae sp. nov., an extremely halophilic archaeon from Algerian hypersaline environment

inferred← citeshttps://doi.org/10.1099/ijsem.0.003534openalex-snapshot

Halomicrococcus hydrotolerans gen. nov., sp. nov., an extremely halophilic archaeon isolated from a subterranean salt deposit

inferred← citeshttps://doi.org/10.1099/ijsem.0.003675openalex-snapshot

Halorientalis pallida sp. nov., an extremely halophilic archaeon isolated from a marine saltern

inferred← citeshttps://doi.org/10.1099/ijsem.0.003956openalex-snapshot

Genome-based analyses reveal a synonymy among Halorubrum distributum Zvyagintseva and Tarasov 1989; Oren and Ventosa 1996, Halorubrum terrestre Ventosa et al. 2004, Halorubrum arcis Xu et al. 2007 and Halorubrum litoreum Cui et al. 2007. Emended description of Halorubrum distributum Zvyagintseva…

inferred← citeshttps://doi.org/10.1099/ijsem.0.005287openalex-snapshot

Comamonas fluminis sp. nov., isolated from the Han River, Republic of Korea

inferred← citeshttps://doi.org/10.1099/ijsem.0.005293openalex-snapshot

Leclercia pneumoniae sp. nov., a bacterium isolated from clinical specimen in Leipzig, Germany

inferred← citeshttps://doi.org/10.1099/ijsem.0.006157openalex-snapshot

Characterization of Haloarcula terrestris sp. nov. and reclassification of a Haloarcula species based on a taxogenomic approach

inferred← citeshttps://doi.org/10.1099/ijsem.0.006783openalex-snapshot

Unexpected 16S rRNA heterogeneity in ‘Acetobacterium dehalogenans’ and reclassification as Acetobacterium malicum subsp. dehalogenans subsp. nov.

inferred← citeshttps://doi.org/10.1099/jmm.0.001568openalex-snapshot

Variations in oral microbiome and its predictive functions between tumorous and healthy individuals

inferred← citeshttps://doi.org/10.1099/mgen.0.001030openalex-snapshot

Noise reduction strategies in metagenomic chromosome confirmation capture to link antibiotic resistance genes to microbial hosts

inferred← citeshttps://doi.org/10.1099/mgen.0.001255openalex-snapshot

GROND: a quality-checked and publicly available database of full-length 16S-ITS-23S rRNA operon sequences

inferred← citeshttps://doi.org/10.1099/mgen.0.001378openalex-snapshot

Scalable genotyping of microbial colonies

inferred← citeshttps://doi.org/10.1099/mgen.0.001461openalex-snapshot

SyFi: generating and using sequence fingerprints to distinguish SynCom isolates

inferred← citeshttps://doi.org/10.1101/016188openalex-snapshot

Intragenomic homogeneity on Liberibacter 16S rDNA confirms phylogeny and explains ecological strategy

inferred← citeshttps://doi.org/10.1101/2020.10.02.324038openalex-snapshot

Accurate Microbiome Sequencing with Synthetic Long Read Sequencing

inferred← citeshttps://doi.org/10.1101/2021.01.01.425045openalex-snapshot

Mining underutilized whole-genome sequencing projects to improve 16S rRNA databases

inferred← citeshttps://doi.org/10.1101/2021.10.05.463247openalex-snapshot

Assessing microbial growth monitoring methods for challenging strains and cultures

inferred← citeshttps://doi.org/10.1101/2023.02.21.529475openalex-snapshot

Machined silicon traps for capturing novel bacterial communities and strains in-situ

inferred← citeshttps://doi.org/10.1101/2023.12.06.570468openalex-snapshot

NRPS genes provide antifungal activity to new Bacillus and Paenibacillus strains and change their expression in the presence of phytopathogens in a strain-specific manner

inferred← citeshttps://doi.org/10.1101/2024.01.17.575712openalex-snapshot

Surface Patterned Omniphobic Tiles (SPOTs): a versatile platform for scalable liquid handling

inferred← citeshttps://doi.org/10.1101/2024.04.30.591805openalex-snapshot

Lithic bacterial communities: ecological aspects focusing on Tintenstrich communities

inferred← citeshttps://doi.org/10.1101/2024.06.11.598530openalex-snapshot

Culture-dependent identification of rare marine sediment bacteria from the Gulf of Mexico and Antarctica

inferred← citeshttps://doi.org/10.1101/2024.06.21.600076openalex-snapshot

RecA is a reliable marker for bacterial taxonomy, even in the Candidate Phyla Radiation

inferred← citeshttps://doi.org/10.1101/2024.08.15.608086openalex-snapshot

Modular RNA:DNA nanostructures enable nanopore profiling of ribosomal RNA processing and rRNA variants

inferred← citeshttps://doi.org/10.1101/2024.12.27.630527openalex-snapshot

Utilizing full-length 16S rRNA sequencing to assess the impact of diet formulation and age on targeted gut microbiome colonization in laboratory and mass-reared Mediterranean fruit flies

inferred← citeshttps://doi.org/10.1101/2025.04.04.647187openalex-snapshot

Investigating microbiota differences across chronic pancreatitis, influenced by lifestyle and genetic determinants

inferred← citeshttps://doi.org/10.1101/2025.06.23.661116openalex-snapshot

16S-23S-5S rRNA Database: a comprehensive integrated database of archaeal and bacterial rRNA sequences, alignments, intragenomic heterogeneity, and secondary structures

inferred← citeshttps://doi.org/10.1101/435099openalex-snapshot

Comparing faster evolving rplB and rpsC versus SSU rRNA for improved microbial community resolution

inferred← citeshttps://doi.org/10.1101/751123openalex-snapshot

Toward standards in clinical microbiome studies: comparison of three DNA extraction methods and two bioinformatic pipelines

inferred← citeshttps://doi.org/10.1111/1462-2920.12626openalex-snapshot

Complex bacterial diversity in the white biofilms of the Catacombs of St. Callixtus in Rome evidenced by different investigation strategies

showing the first 200 of 439

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