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Genome-Wide Identification of Host-Segregating Single-Nucleotide Polymorphisms for Source Attribution of Clinical Campylobacter coli Isolates

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Identification of the different intermediates in the interaction of (A)BC excinuclease with its substrates by DNase I footprinting on two uniquely modified oligonucleotides
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Incidence and ecology of Campylobacter jejuni and coli in animals
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Campylobacter
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Campylobacter genotypes from food animals, environmental sources and clinical disease in Scotland 2005/6
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Early treatment with erythromycin of Campylobacter jejuni-associated dysentery in children
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Rapid host switching in generalist Campylobacter strains erodes the signal for tracing human infections
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Population genomics of bacterial host adaptation
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A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014
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Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
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Ruminant and chicken: important sources of campylobacteriosis in France despite a variation of source attribution in 2009 and 2015
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Source attribution of Campylobacter jejuni shows variable importance of chicken and ruminants reservoirs in non-invasive and invasive French clinical isolates
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Human Campylobacteriosis in Luxembourg, 2010–2013: A Case-Control Study Combined with Multilocus Sequence Typing for Source Attribution and Risk Factor Analysis
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Limb proportions show developmental plasticity in response to embryo movement
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Genome-wide association study identifies vitamin B 5 biosynthesis as a host specificity factor in Campylobacter
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Epidemiologic and Clinical Features ofCampylobacter jejuniInfections
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Campylobacter Genotyping to Determine the Source of Human Infection
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SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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Campylobacter Excreted into the Environment by Animal Sources: Prevalence, Concentration Shed, and Host Association
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National Antimicrobial Resistance Monitoring System: Two Decades of Advancing Public Health Through Integrated Surveillance of Antimicrobial Resistance
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A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
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Inference of Population Structure Using Multilocus Genotype Data
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FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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Characterization and antigenicity of recombinant Campylobacter jejuni flagellar capping protein FliD
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Microreact: visualizing and sharing data for genomic epidemiology and phylogeography
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Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the σ 54-dependent regulon in Campylobacter jejuni
inferredcites →https://doi.org/10.1099/mic.0.28348-0openalex-snapshot
Identification of host-associated alleles by multilocus sequence typing of Campylobacter coli strains from food animals
inferredcites →https://doi.org/10.1101/gr.232397.117openalex-snapshot
GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogens
inferredcites →https://doi.org/10.1111/1462-2920.13628openalex-snapshot
Genome‐wide association of functional traits linked with C ampylobacter jejuni survival from farm to fork
inferredcites →https://doi.org/10.1111/1462-2920.14760openalex-snapshot
Gene pool transmission of multidrug resistance among Campylobacter from livestock, sewage and human disease
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1111/mec.12162openalex-snapshot
Progressive genome‐wide introgression in agricultural Campylobacter coli
inferredcites →https://doi.org/10.1111/mec.12742openalex-snapshot
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals
inferredcites →https://doi.org/10.1111/mec.14176openalex-snapshot
Local genes for local bacteria: Evidence of allopatry in the genomes of transatlantic Campylobacter populations
inferredcites →https://doi.org/10.1126/science.1155532openalex-snapshot
Convergence of Campylobacter Species: Implications for Bacterial Evolution
inferredcites →https://doi.org/10.1128/aem.00124-10openalex-snapshot
Host Association of Campylobacter Genotypes Transcends Geographic Variation
inferredcites →https://doi.org/10.1128/aem.00499-09openalex-snapshot
Spatiotemporal Homogeneity of Campylobacter Subtypes from Cattle and Sheep across Northeastern and Southwestern Scotland
inferredcites →https://doi.org/10.1128/aem.00658-06openalex-snapshot
Molecular Epidemiologic Investigation of Campylobacter coli in Swine Production Systems, Using Multilocus Sequence Typing
inferredcites →https://doi.org/10.1128/aem.00934-16openalex-snapshot
Molecular Epidemiology of Campylobacter coli Strains Isolated from Different Sources in New Zealand between 2005 and 2014
inferredcites →https://doi.org/10.1128/aem.02326-07openalex-snapshot
Molecular Epidemiologic Investigation of Campylobacter coli in Swine Production Systems, Using Multilocus Sequence Typing
inferredcites →https://doi.org/10.1128/aem.03085-16openalex-snapshot
Genome-Wide Identification of Host-Segregating Epidemiological Markers for Source Attribution in Campylobacter jejuni
inferredcites →https://doi.org/10.1128/aem.45.2.375-380.1983openalex-snapshot
Avian wildlife reservoir of Campylobacter fetus subsp. jejuni, Yersinia spp., and Salmonella spp. in Norway
inferredcites →https://doi.org/10.1128/cmr.11.3.555openalex-snapshot
Campylobacter Species and Guillain-Barre Syndrome
inferredcites →https://doi.org/10.1128/genomea.01004-16openalex-snapshot
Complete Genome Sequences of the Plasmid-Bearing Campylobacter coli Strains HC2-48, CF2-75, and CO2-160 Isolated from Retail Beef Liver
inferredcites →https://doi.org/10.1128/genomea.01056-13openalex-snapshot
Complete Genome Sequence of the Campylobacter coli Clinical Isolate 15-537360
inferredcites →https://doi.org/10.1128/genomea.01360-17openalex-snapshot
Complete Genome Sequences of Plasmid-Bearing Multidrug-Resistant Campylobacter jejuni and Campylobacter coli Strains with Type VI Secretion Systems, Isolated from Retail Turkey and Pork
inferredcites →https://doi.org/10.1128/jb.00818-13openalex-snapshot
Functional Characterization of SbmA, a Bacterial Inner Membrane Transporter Required for Importing the Antimicrobial Peptide Bac7(1-35)
inferredcites →https://doi.org/10.1128/jb.186.16.5332-5341.2004openalex-snapshot
Role of an Inducible Single-Domain Hemoglobin in Mediating Resistance to Nitric Oxide and Nitrosative Stress in Campylobacter jejuni and Campylobacter coli
inferredcites →https://doi.org/10.1128/jcm.39.1.14-23.2001openalex-snapshot
Multilocus Sequence Typing System for Campylobacter jejuni
inferredcites →https://doi.org/10.1128/jcm.43.5.2080-2091.2005openalex-snapshot
Use of the Oxford Multilocus Sequence Typing Protocol and Sequencing of the Flagellin Short Variable Region To Characterize Isolates from a Large Outbreak of Waterborne Campylobacter sp. Strains in Walkerton, Ontario, Canada
inferredcites →https://doi.org/10.1186/1471-2105-11-595openalex-snapshot
BIGSdb: Scalable analysis of bacterial genome variation at the population level
inferredcites →https://doi.org/10.1186/1471-2164-12-584openalex-snapshot
Closely related Campylobacter jejuni strains from different sources reveal a generalist rather than a specialist lifestyle
inferredcites →https://doi.org/10.12688/f1000research.15931.1openalex-snapshot
FastQ Screen: A tool for multi-genome mapping and quality control
inferredcites →https://doi.org/10.12688/wellcomeopenres.14826.1openalex-snapshot
Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications
inferredcites →https://doi.org/10.1371/journal.pgen.1000203openalex-snapshot
Tracing the Source of Campylobacteriosis
inferredcites →https://doi.org/10.1371/journal.pone.0015708openalex-snapshot
Evolution of an Agriculture-Associated Disease Causing Campylobacter coli Clade: Evidence from National Surveillance Data in Scotland
inferredcites →https://doi.org/10.1371/journal.pone.0054390openalex-snapshot
Signal Balancing by the CetABC and CetZ Chemoreceptors Controls Energy Taxis in Campylobacter jejuni
inferredcites →https://doi.org/10.1371/journal.pone.0055029openalex-snapshot
Practicalities of Using Non-Local or Non-Recent Multilocus Sequence Typing Data for Source Attribution in Space and Time of Human Campylobacteriosis
inferredcites →https://doi.org/10.1371/journal.pone.0064504openalex-snapshot
Elucidating the Aetiology of Human Campylobacter coli Infections
inferredcites →https://doi.org/10.1371/journal.pone.0081796openalex-snapshot
Source Attribution of Human Campylobacter Isolates by MLST and Fla-Typing and Association of Genotypes with Quinolone Resistance
inferredcites →https://doi.org/10.1371/journal.pone.0214228openalex-snapshot
Diversity of transducer-like proteins (Tlps) in Campylobacter
inferredcites →https://doi.org/10.2807/1560-7917.es.2019.24.43.1800696openalex-snapshot
A systematic review of source attribution of human campylobacteriosis using multilocus sequence typing
inferredcites →https://doi.org/10.2903/j.efsa.2018.5500openalex-snapshot
The European Union summary report on trends and sources of zoonoses, zoonotic agents and food‐borne outbreaks in 2017
inferredcites →https://doi.org/10.3201/eid1701.p21101openalex-snapshot
Foodborne Illness Acquired in the United States—Unspecified Agents
inferredcites →https://doi.org/10.3201/eid2309.170081openalex-snapshot
Estimated Annual Numbers of Foodborne Pathogen–Associated Illnesses, Hospitalizations, and Deaths, France, 2008–2013
inferredcites →https://doi.org/10.3389/fmicb.2017.00513openalex-snapshot
Characterisation of Aerotolerant Forms of a Robust Chicken Colonizing Campylobacter coli
inferredcites →https://doi.org/10.3389/fmicb.2017.00955openalex-snapshot
Campylobacter coli in Organic and Conventional Pig Production in France and Sweden: Prevalence and Antimicrobial Resistance
inferredcites →https://doi.org/10.3389/fmicb.2019.01509openalex-snapshot
A Historical Review on Antibiotic Resistance of Foodborne Campylobacter
inferredcites →https://doi.org/10.6084/m9.figshare.963153.v1openalex-snapshot
Aligning sequence reads, clone sequences and assembly con*gs with BWA-MEM

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Machine Learning the Source Campylobacter Infection in the United States of America
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Rapid Genotyping of Campylobacter coli Strains from Poultry Meat by PFGE, Sau-PCR, and fla-DGGE
inferred← citeshttps://doi.org/10.1007/s10875-025-01949-0openalex-snapshot
Stool Screening for Campylobacter Species in Hypogammaglobulinemic Patients Receiving Immunoglobulin Therapy
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Whole-genome sequencing for food safety
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Broad-host-range bacteriophages CBP1 and CBP2 with dual-species activity against Campylobacter jejuni and Campylobacter coli
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Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data
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Genomic, pangenomic, metagenomic and trancriptomics perspectives to enhance microbial modeling and quantitative risk assessment in food environments
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Seasonal dynamics, antimicrobial resistance, and genetic lineages of thermotolerant Campylobacter isolates from South American camelids
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Campylobacter spp. : quoi de neuf ?
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10.1016/s2211-9698(23)42156-5
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A Review on Microbiological Source Attribution Methods of Human Salmonellosis: From Subtyping to Whole-Genome Sequencing
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Contrasting genes conferring short- and long-term biofilm adaptation in Listeria
inferred← citeshttps://doi.org/10.1099/mgen.0.001589openalex-snapshot
Identification of genetic determinants that drive population differentiation and host adaptation in Campylobacter jejuni in California
inferred← citeshttps://doi.org/10.1101/2022.07.27.501805openalex-snapshot
MinSNPs: an R package for derivation of resolution-optimised SNP sets from microbial genomic data
inferred← citeshttps://doi.org/10.1111/1541-4337.13020openalex-snapshot
Genetic, physiological, and cellular heterogeneities of bacterial pathogens in food matrices: Consequences for food safety
inferred← citeshttps://doi.org/10.1128/aac.00193-26openalex-snapshot
Contributions of whole-genome sequencing to the epidemiological monitoring of Campylobacter spp. in France
inferred← citeshttps://doi.org/10.1128/aac.01124-21openalex-snapshot
Emergence of Erythromycin Resistance Methyltransferases in Campylobacter coli Strains in France
inferred← citeshttps://doi.org/10.1128/aac.01668-24openalex-snapshot
Increasing rates of erm (B) and erm (N) in human Campylobacter coli and Campylobacter jejuni erythromycin-resistant isolates between 2018 and 2023 in France
inferred← citeshttps://doi.org/10.1128/mbio.02835-22openalex-snapshot
Genomic Insights into the Increased Occurrence of Campylobacteriosis Caused by Antimicrobial-Resistant Campylobacter coli
inferred← citeshttps://doi.org/10.1128/spectrum.01523-24openalex-snapshot
First isolation of Campylobacter vicugnae sp. nov. in humans suffering from gastroenteritis
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Machine learning to predict the source of campylobacteriosis using whole genome data
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Recent emergence of a multidrug-resistant Campylobacter coli lineage linked to poultry intensification in the Peruvian Amazon
inferred← citeshttps://doi.org/10.2903/j.efsa.2021.6490openalex-snapshot
The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2018/2019
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The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2019–2020
inferred← citeshttps://doi.org/10.2903/j.efsa.2023.7867openalex-snapshot
The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2020/2021
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The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2021–2022
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The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2022–2023
inferred← citeshttps://doi.org/10.2903/j.efsa.2026.9887openalex-snapshot
The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2023–2024
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1285236openalex-snapshot
Combined genomic-proteomic approach in the identification of Campylobacter coli amoxicillin-clavulanic acid resistance mechanism in clinical isolates
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Antimicrobial use on Campylobacter revealed by next-generation sequencing in patients with common variable immunodeficiency
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Phylogenetic Analysis Reveals Source Attribution Patterns for Campylobacter spp. in Tennessee and Pennsylvania
inferred← citeshttps://doi.org/10.46756/001c.147190openalex-snapshot
Genomics of Antimicrobial Resistant Campylobacter Transmission Through UK Agri-Food Systems
inferred← citeshttps://doi.org/10.70675/4ea4217dz088bz4aecza18dz16a2c0165c99openalex-snapshot
Développement d'outils génétiques pour les mycoplasmes urogénitaux, Mycoplasma genitalium et Mycoplasma hominis
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Etude de l’organisation spatiale et de l'hétérogénéité phénotypique d’Escherichia coli O157 : H7 et Listeria monocytogenes dans des matrices gélifiées modèles
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Génomique appliquée à l'étude des infections par les bactéries des genres Campylobacter et Helicobacter.
inferred← citeshttps://doi.org/10.70675/c2632e44zf646z46b7za24bz6d73c78f1944openalex-snapshot
Développement d'une méthode d'analyse protéomique par spectrométrie de masse pour le diagnostic médical des infections bactériennes du sang
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Peer Review #1 of "minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.15339v0.1/reviews/2openalex-snapshot
Peer Review #2 of "minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.15339openalex-snapshot
minSNPs: an R package for the derivation of resolution-optimised SNP sets from microbial genomic data
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.