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Phylogenetic Analysis Reveals Source Attribution Patterns for Campylobacter spp. in Tennessee and Pennsylvania

https://doi.org/10.3390/microorganisms9112300

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Whole-genome sequencing of Campylobacter jejuni isolated from Danish routine human stool samples reveals surprising degree of clustering

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inferredcites →https://doi.org/10.1016/j.ijid.2020.11.167openalex-snapshot

Source attributed case-control study of campylobacteriosis in New Zealand

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A combined case-control and molecular source attribution study of human Campylobacter infections in Germany, 2011–2014

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Ruminant and chicken: important sources of campylobacteriosis in France despite a variation of source attribution in 2009 and 2015

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Source attribution of Campylobacter jejuni shows variable importance of chicken and ruminants reservoirs in non-invasive and invasive French clinical isolates

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Human Campylobacteriosis in Luxembourg, 2010–2013: A Case-Control Study Combined with Multilocus Sequence Typing for Source Attribution and Risk Factor Analysis

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Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

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Molecular Evolution and Phylogenetics

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The neighbor-joining method: a new method for reconstructing phylogenetic trees.

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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

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Progressive genome‐wide introgression in agricultural Campylobacter coli

inferredcites →https://doi.org/10.1111/mec.12742openalex-snapshot

Cryptic ecology among host generalist Campylobacter jejuni in domestic animals

inferredcites →https://doi.org/10.1111/zph.12366openalex-snapshot

Population structure and attribution of human clinical Campylobacter jejuni isolates from central Europe to livestock and environmental sources

inferredcites →https://doi.org/10.1111/zph.12802openalex-snapshot

Establishment of sentinel surveillance of human clinical campylobacteriosis in Ireland

inferredcites →https://doi.org/10.1128/aem.00087-15openalex-snapshot

Selection and Characterization of Phage-Resistant Mutant Strains of Listeria monocytogenes Reveal Host Genes Linked to Phage Adsorption

inferredcites →https://doi.org/10.1128/aem.00124-10openalex-snapshot

Host Association of Campylobacter Genotypes Transcends Geographic Variation

inferredcites →https://doi.org/10.1128/aem.00934-16openalex-snapshot

Molecular Epidemiology of Campylobacter coli Strains Isolated from Different Sources in New Zealand between 2005 and 2014

inferredcites →https://doi.org/10.1128/aem.01787-20openalex-snapshot

Genome-Wide Identification of Host-Segregating Single-Nucleotide Polymorphisms for Source Attribution of Clinical Campylobacter coli Isolates

inferredcites →https://doi.org/10.1128/aem.03085-16openalex-snapshot

Genome-Wide Identification of Host-Segregating Epidemiological Markers for Source Attribution in Campylobacter jejuni

inferredcites →https://doi.org/10.1128/cmr.00072-18openalex-snapshot

Pathogenomics of EmergingCampylobacterSpecies

inferredcites →https://doi.org/10.1128/jcm.00017-17openalex-snapshot

Whole-Genome Sequencing in Epidemiology of Campylobacter jejuni Infections

inferredcites →https://doi.org/10.1128/jcm.01959-14openalex-snapshot

Multilocus Sequence Typing (MLST) and Whole-Genome MLST of Campylobacter jejuni Isolates from Human Infections in Three Districts during a Seasonal Peak in Finland

inferredcites →https://doi.org/10.1128/jcm.02981-13openalex-snapshot

Benchmarking of Methods for Genomic Taxonomy

inferredcites →https://doi.org/10.1128/jcm.39.1.14-23.2001openalex-snapshot

Multilocus Sequence Typing System for Campylobacter jejuni

inferredcites →https://doi.org/10.1128/jcm.43.5.2315-2329.2005openalex-snapshot

Extended Multilocus Sequence Typing System for Campylobacter coli , C. lari , C. upsaliensis , and C. helveticus

inferredcites →https://doi.org/10.1177/0379572120953047openalex-snapshot

Food Safety Implications of Transitions Toward Sustainable Healthy Diets

inferredcites →https://doi.org/10.1186/1471-2164-15-129openalex-snapshot

Comparative genomics of unintrogressed Campylobacter coli clades 2 and 3

inferredcites →https://doi.org/10.1186/1471-2458-14-1203openalex-snapshot

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inferredcites →https://doi.org/10.1186/s12889-016-3142-6openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pone.0015708openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pone.0064504openalex-snapshot

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inferredcites →https://doi.org/10.1371/journal.pone.0081796openalex-snapshot

Source Attribution of Human Campylobacter Isolates by MLST and Fla-Typing and Association of Genotypes with Quinolone Resistance

inferredcites →https://doi.org/10.1371/journal.pone.0183790openalex-snapshot

Source attribution of human campylobacteriosis at the point of exposure by combining comparative exposure assessment and subtype comparison based on comparative genomic fingerprinting

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Tracing Back Clinical Campylobacter jejuni in the Northwest of Italy and Assessing Their Potential Source

inferredcites →https://doi.org/10.3389/fmicb.2020.571064openalex-snapshot

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inferredcites →https://doi.org/10.3389/fmicb.2021.703890openalex-snapshot

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inferredcites →https://doi.org/10.4315/0362-028x.jfp-16-195openalex-snapshot

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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Machine Learning the Source Campylobacter Infection in the United States of America

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Downregulation of FcRn promotes ferroptosis in herpes simplex virus-1-induced lung injury

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Prevalence of ciprofloxacin resistance and associated genetic determinants differed among Campylobacter isolated from human and poultry meat sources in Pennsylvania

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