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Oenococcus oeni Genome Plasticity Is Associated with Fitness

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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An Improved Sequence Assembly Program

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T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton

inferredcites →https://doi.org/10.1007/s00253-005-0095-6openalex-snapshot

The arginine deiminase locus of Oenococcus oeni includes a putative arginyl-tRNA synthetase ArgS2 at its 3′-end

inferredcites →https://doi.org/10.1007/s00253-006-0487-2openalex-snapshot

Intraspecific diversity of Oenococcus oeni strains determined by sequence analysis of target genes

inferredcites →https://doi.org/10.1007/s002840010069openalex-snapshot

Genomic DNA Fingerprinting of Oenococcus oeni Strains by Pulsed-Field Gel Electrophoresis and Randomly Amplified Polymorphic DNA-PCR

inferredcites →https://doi.org/10.1007/s002849900324openalex-snapshot

Lysogeny of Oenococcus oeni (syn. Leuconostoc oenos ) and Study of Their Induced Bacteriophages

inferredcites →https://doi.org/10.1007/s007050050308openalex-snapshot

Genome diversity in temperate bacteriophages of Oenococcus oeni

inferredcites →https://doi.org/10.1007/s10534-006-9063-6openalex-snapshot

Coordinating responses to iron and oxygen stress with DNA and mRNA promoters: The ferritin story

inferredcites →https://doi.org/10.1016/0378-1119(94)90245-3openalex-snapshot

Cloning, sequence and in vitro transcription/translation analysis of a 3.2-kb EcoRI-HindIII fragment of Leuconostoc oenos bacteriophage L10

inferredcites →https://doi.org/10.1016/j.femsre.2005.04.011openalex-snapshot

Genomic analysis of PSU-1 and its relevance to winemaking

inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2005.04.023openalex-snapshot

A new approach for selection of Oenococcus oeni strains in order to produce malolactic starters

inferredcites →https://doi.org/10.1016/j.ijfoodmicro.2005.09.011openalex-snapshot

Both arginine and fructose stimulate pH-independent resistance in the wine bacteria Oenococcus oeni

inferredcites →https://doi.org/10.1016/j.mimet.2004.10.010openalex-snapshot

Determination of an internal control to apply reverse transcription quantitative PCR to study stress response in the lactic acid bacterium Oenococcus oeni

inferredcites →https://doi.org/10.1016/j.plasmid.2005.04.001openalex-snapshot

Sequence analysis of the plasmid genome of the probiotic strain Lactobacillus paracasei NFBC338 which includes the plasmids pCD01 and pCD02

inferredcites →https://doi.org/10.1016/j.syapm.2005.10.001openalex-snapshot

Evaluation of intra-specific diversities in Oenococcus oeni through analysis of genomic and expressed DNA

inferredcites →https://doi.org/10.1016/j.virol.2004.04.029openalex-snapshot

Diversity in the lysis-integration region of oenophage genomes and evidence for multiple tRNA loci, as targets for prophage integration in Oenococcus oeni

inferredcites →https://doi.org/10.1016/s0147-619x(03)00029-5openalex-snapshot

Sequence analysis and characterization of plasmids from Streptococcus thermophilus

inferredcites →https://doi.org/10.1016/s0168-1605(02)00323-9openalex-snapshot

Phenotypic and genotypic characterization of Oenococcus oeni strains isolated from Italian wines

inferredcites →https://doi.org/10.1016/s0168-1605(03)00162-4openalex-snapshot

A bacterial gene homologous to ABC transporters protect Oenococcus œni from ethanol and other stress factors in wine

inferredcites →https://doi.org/10.1016/s0168-6445(03)00066-4openalex-snapshot

Phylogeny of the bacterial superfamily of Crp-Fnr transcription regulators: exploiting the metabolic spectrum by controlling alternative gene programs

inferredcites →https://doi.org/10.1016/s0378-1097(01)00299-3openalex-snapshot

Intraspecific diversity of Oenococcus oeni isolated during red wine-making in Japan

inferredcites →https://doi.org/10.1016/s0378-1097(96)00540-xopenalex-snapshot

Identification and sequence analysis of the region encoding the site-specific integration system from Leuconostoc œnos (Œnococcus œni) temperate bacteriophage φ10MC

inferredcites →https://doi.org/10.1016/s0923-2508(01)01244-xopenalex-snapshot

The arcABC gene cluster encoding the arginine deiminase pathway of Oenococcus oeni, and arginine induction of a CRP-like gene

inferredcites →https://doi.org/10.1016/s0923-2508(97)81903-1openalex-snapshot

Sequence of DNA 16S/23S spacer region of Leuconostoc œnos (Œnococcus œni): application to strain differentiation

inferredcites →https://doi.org/10.1046/j.1365-2672.2003.01907.xopenalex-snapshot

Molecular characterization of Oenococcus oeni genes encoding proteins involved in arginine transport

inferredcites →https://doi.org/10.1073/pnas.0607117103openalex-snapshot

Comparative genomics of the lactic acid bacteria

inferredcites →https://doi.org/10.1073/pnas.87.5.1889openalex-snapshot

Genomic subtraction for cloning DNA corresponding to deletion mutations.

inferredcites →https://doi.org/10.1080/10408410600709800openalex-snapshot

Environmental Stress Response in Wine Lactic Acid Bacteria: BeyondBacillus subtilis

inferredcites →https://doi.org/10.1093/nar/gkj014openalex-snapshot

ISfinder: the reference centre for bacterial insertion sequences

inferredcites →https://doi.org/10.1099/00207713-40-1-83openalex-snapshot

Taxonomy of Leuconostoc Species, Particularly Leuconostoc oenos, as Revealed by Numerical Analysis of Total Soluble Cell Protein Patterns, DNA Base Compositions, and DNA-DNA Hybridizations

inferredcites →https://doi.org/10.1099/00221287-137-9-2135openalex-snapshot

Lysogeny in Leuconostoc oenos

inferredcites →https://doi.org/10.1099/00221287-146-12-3195openalex-snapshot

The Oenococcus oeni genome: physical and genetic mapping of strain GM and comparison with the genome of a ‘divergent’ strain, PSU-1

inferredcites →https://doi.org/10.1099/13500872-145-5-1245openalex-snapshot

Expression of the Oenococcus oeni trxA gene is induced by hydrogen peroxide and heat shock

inferredcites →https://doi.org/10.1101/gr.8.3.175openalex-snapshot

Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment

inferredcites →https://doi.org/10.1111/j.1365-2672.1994.tb03074.xopenalex-snapshot

Inter‐strain relationships among wine leuconostocs and their divergence from other Leuconostoc species, as revealed by low frequency restriction fragment analysis of genomic DNA

inferredcites →https://doi.org/10.1111/j.1365-2672.2008.03967.xopenalex-snapshot

Characterization of an acquireddps-containing gene island in the lactic acid bacteriumOenococcus oeni

inferredcites →https://doi.org/10.1111/j.1432-1033.2004.04037.xopenalex-snapshot

Escherichia coli thioredoxin inhibition by cadmium

inferredcites →https://doi.org/10.1111/j.1574-6968.1997.tb10254.xopenalex-snapshot

Identification and sequence analysis of the region encoding the site-specific integration system from Leuconostoc œnos (Œnococcus œni) temperate bacteriophage φ10MC

inferredcites →https://doi.org/10.1111/j.1574-6968.1999.tb13437.xopenalex-snapshot

Molecular analysis of the region encoding the lytic system fromOenococcus oenitemperate bacteriophage φ10MC

inferredcites →https://doi.org/10.1111/j.1574-6968.2006.00141.xopenalex-snapshot

Conservation of key elements of natural competence inLactococcus lactisssp.

inferredcites →https://doi.org/10.1128/aem.00673-08openalex-snapshot

Characterization ofgtf, a Glucosyltransferase Gene in the Genomes ofPediococcus parvulusandOenococcus oeni, Two Bacterial Species Commonly Found in Wine

inferredcites →https://doi.org/10.1128/aem.01109-06openalex-snapshot

Induction of Heavy-Metal-Transporting CPX-Type ATPases during Acid Adaptation in Lactobacillus bulgaricus

inferredcites →https://doi.org/10.1128/aem.01213-06openalex-snapshot

Evidence for Horizontal Gene Transfer as Origin of Putrescine Production in Oenococcus oeni RM83

inferredcites →https://doi.org/10.1128/aem.69.10.6032-6040.2003openalex-snapshot

IS Lpl1 Is a Functional IS 30 -Related Insertion Element in Lactobacillus plantarum That Is Also Found in Other Lactic Acid Bacteria

inferredcites →https://doi.org/10.1128/aem.70.12.7210-7219.2004openalex-snapshot

Allelic Diversity and Population Structure inOenococcus oenias Determined from Sequence Analysis of Housekeeping Genes

inferredcites →https://doi.org/10.1128/jb.01457-07openalex-snapshot

Role of Hypermutability in the Evolution of the GenusOenococcus

inferredcites →https://doi.org/10.1128/jb.186.19.6575-6585.2004openalex-snapshot

Genome-Wide Molecular Clock and Horizontal Gene Transfer in Bacterial Evolution

inferredcites →https://doi.org/10.1128/jb.187.10.3455-3464.2005openalex-snapshot

Role of mutS and mutL Genes in Hypermutability and Recombination in Staphylococcus aureus

inferredcites →https://doi.org/10.1128/jb.187.17.6119-6127.2005openalex-snapshot

ExploringLactobacillus plantarumGenome Diversity by Using Microarrays

inferredcites →https://doi.org/10.1128/mmbr.68.3.560-602.2004openalex-snapshot

Phages and the Evolution of Bacterial Pathogens: from Genomic Rearrangements to Lysogenic Conversion

inferredcites →https://doi.org/10.1371/journal.ppat.0030119openalex-snapshot

Genome Dynamics of Campylobacter jejuni in Response to Bacteriophage Predation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4679995openalex-extracted

Oenococcus Pseudoeni Sp. Nov., a Lactic Acid Bacterium Isolated from French Cider

inferred← citeshttps://doi.org/10.1002/9781118868386.ch15openalex-snapshot

Lactic Acid Bacteria and Malolactic Fermentation in Wine

inferred← citeshttps://doi.org/10.1002/jobm.201900339openalex-snapshot

Heterologous expression of the puuE from Oenococcus oeni SD‐2a in Lactobacillus plantarum WCFS1 improves ethanol tolerance

inferred← citeshttps://doi.org/10.1007/978-0-387-92771-8_15openalex-snapshot

Stress Responses of Oenococcus oeni

inferred← citeshttps://doi.org/10.1007/978-0-387-92771-8_9openalex-snapshot

Responses of Lactic Acid Bacteria to Heavy Metal Stress

inferred← citeshttps://doi.org/10.1007/978-3-319-60021-5_5openalex-snapshot

Viruses of Wine-Associated Yeasts and Bacteria

inferred← citeshttps://doi.org/10.1007/s00217-020-03466-3openalex-snapshot

Characterization of natural Oenococcus oeni strains for Montepulciano d’Abruzzo organic wine production

inferred← citeshttps://doi.org/10.1007/s00253-009-2425-6openalex-snapshot

Genotypic diversity in Oenococcus oeni by high-density microarray comparative genome hybridization and whole genome sequencing

inferred← citeshttps://doi.org/10.1007/s00253-011-3546-2openalex-snapshot

Genomic variations of Oenococcus oeni strains and the potential to impact on malolactic fermentation and aroma compounds in wine

inferred← citeshttps://doi.org/10.1007/s00253-014-5976-0openalex-snapshot

Implications of new research and technologies for malolactic fermentation in wine

inferred← citeshttps://doi.org/10.1007/s00253-018-8743-9openalex-snapshot

Bio-prospectus of cadmium bioadsorption by lactic acid bacteria to mitigate health and environmental impacts

inferred← citeshttps://doi.org/10.1007/s12223-014-0312-8openalex-snapshot

Efficient recovery of whole cell proteins in Oenococcus oeni—a comparison of different extraction protocols for high-throughput malolactic starter applications

inferred← citeshttps://doi.org/10.1007/s12223-015-0402-2openalex-snapshot

Assessment of the genetic polymorphism and physiological characterization of indigenous Oenococcus oeni strains isolated from Aglianico del Vulture red wine

inferred← citeshttps://doi.org/10.1007/s12223-015-0416-9openalex-snapshot

Arginine deiminase pathway genes and arginine degradation variability in Oenococcus oeni strains

inferred← citeshttps://doi.org/10.1007/s12223-016-0446-yopenalex-snapshot

Growth and consumption of l-malic acid in wine-like medium by acclimated and non-acclimated cultures of Patagonian Oenococcus oeni strains

inferred← citeshttps://doi.org/10.1007/s12275-018-7568-7openalex-snapshot

Evidence of the genetic diversity and clonal population structure of Oenococcus oeni strains isolated from different wine-making regions of China

inferred← citeshttps://doi.org/10.1007/s13213-010-0072-xopenalex-snapshot

Selection criteria and tools for malolactic starters development: an update

inferred← citeshttps://doi.org/10.1007/s13213-014-0810-6openalex-snapshot

The rapid identification of lactic acid bacteria present in Chilean winemaking processes using culture-independent analysis

inferred← citeshttps://doi.org/10.1016/b978-0-12-375021-1.10008-6openalex-snapshot

Lactic Acid Bacteria

inferred← citeshttps://doi.org/10.1016/b978-0-12-384927-4.00009-9openalex-snapshot

Amarone

inferred← citeshttps://doi.org/10.1016/j.fm.2012.02.008openalex-snapshot

Prevalent lactic acid bacteria in cider cellars and efficiency of Oenococcus oeni strains

inferred← citeshttps://doi.org/10.1016/j.fm.2013.02.007openalex-snapshot

Use of propidium monoazide for the enumeration of viable Oenococcus oeni in must and wine by quantitative PCR

inferred← citeshttps://doi.org/10.1016/j.fm.2013.08.012openalex-snapshot

Multiplex variable number of tandem repeats for Oenococcus oeni and applications

inferred← citeshttps://doi.org/10.1016/j.fm.2014.04.004openalex-snapshot

Horizontal gene transfer among microorganisms in food: Current knowledge and future perspectives

inferred← citeshttps://doi.org/10.1016/j.fm.2016.08.005openalex-snapshot

Variability in gene content and expression of the thioredoxin system in Oenococcus oeni

inferred← citeshttps://doi.org/10.1016/j.fm.2025.104754openalex-snapshot

Proteomic insight into the beneficial effect of mannoproteins on Oenococcus oeni in wine malolactic fermentation

inferred← citeshttps://doi.org/10.1016/j.foodres.2017.09.039openalex-snapshot

Identification of variable genomic regions related to stress response in Oenococcus oeni

inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2012.06.009openalex-snapshot

IS30 elements are mediators of genetic diversity in Oenococcus oeni

inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2013.06.032openalex-snapshot

Expanding the diversity of oenococcal bacteriophages: Insights into a novel group based on the integrase sequence

inferred← citeshttps://doi.org/10.1016/j.ijfoodmicro.2022.109936openalex-snapshot

Phage-host interactions as a driver of population dynamics during wine fermentation: Betting on underdogs

inferred← citeshttps://doi.org/10.1016/j.mib.2011.07.027openalex-snapshot

Trends and barriers to lateral gene transfer in prokaryotes

inferred← citeshttps://doi.org/10.1016/j.syapm.2010.09.003openalex-snapshot

Molecular and biochemical diversity of Oenococcus oeni strains isolated during spontaneous malolactic fermentation of Malvasia Nera wine

inferred← citeshttps://doi.org/10.1016/j.tibtech.2015.06.008openalex-snapshot

Improving Oenococcus oeni to overcome challenges of wine malolactic fermentation

inferred← citeshttps://doi.org/10.1080/10408398.2014.983591openalex-snapshot

Wine microbiome: A dynamic world of microbial interactions

inferred← citeshttps://doi.org/10.1093/femsre/fux034openalex-snapshot

Oenococcus oeni and the genomic era

inferred← citeshttps://doi.org/10.1111/ajgw.12436openalex-snapshot

Oenococcus oeni, a species born and moulded in wine: a critical review of the stress impacts of wine and the physiological responses

inferred← citeshttps://doi.org/10.1111/j.1365-2672.2012.05425.xopenalex-snapshot

Genetic and phenotypic strain heterogeneity within a natural population ofOenococcus oenifrom Amarone wine

inferred← citeshttps://doi.org/10.1111/jam.13080openalex-snapshot

Characterization of malolactic bacteria isolated from Aosta Valley wines and evidence of psychrotrophy in some strains

inferred← citeshttps://doi.org/10.1128/9781555818821.ch4.1.1openalex-snapshot

Phylogenomic Networks of Microbial Genome Evolution

inferred← citeshttps://doi.org/10.1128/aem.00380-13openalex-snapshot

Distribution and Functions of Phosphotransferase System Genes in the Genome of the Lactic Acid Bacterium Oenococcus oeni

inferred← citeshttps://doi.org/10.1128/aem.00997-19openalex-snapshot

Lysogeny in the Lactic Acid Bacterium Oenococcus oeni Is Responsible for Modified Colony Morphology on Red Grape Juice Agar

inferred← citeshttps://doi.org/10.1128/aem.01307-13openalex-snapshot

Development of a New Method for Detection and Identification of Oenococcus oeni Bacteriophages Based on Endolysin Gene Sequence and Randomly Amplified Polymorphic DNA

inferred← citeshttps://doi.org/10.1186/1471-2164-13-373openalex-snapshot

Comparative analysis of the Oenococcus oeni pan genome reveals genetic diversity in industrially-relevant pathways

inferred← citeshttps://doi.org/10.1186/s12864-016-2604-7openalex-snapshot

Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni

inferred← citeshttps://doi.org/10.1186/s12864-019-5692-3openalex-snapshot

Expanding the biodiversity of Oenococcus oeni through comparative genomics of apple cider and kombucha strains

inferred← citeshttps://doi.org/10.12688/f1000research.1-16.v1openalex-snapshot

Is the pan-genome also a pan-selectome?

inferred← citeshttps://doi.org/10.1371/journal.pone.0049082openalex-snapshot

Identification of pOENI-1 and Related Plasmids in Oenococcus oeni Strains Performing the Malolactic Fermentation in Wine

inferred← citeshttps://doi.org/10.20870/oeno-one.2017.51.4.1861openalex-snapshot

Two different Oenococcus oeni lineages are associated to either red or white wines in Burgundy: genomics and metabolomics insights

inferred← citeshttps://doi.org/10.21548/31-2-1403openalex-snapshot

Genetic and Physiological Characterisation of Oenococcus oeni Strains to Perform Malolactic Fermentation in Wines

inferred← citeshttps://doi.org/10.22207/jpam.12.1.03openalex-snapshot

Determination of Effects of Genetic Diversity of Oenococcus oeni and Physicochemical Characteristics on Malolactic Fermentation Across Chilean Vineyards, using Multivariate Methods

inferred← citeshttps://doi.org/10.3389/fmicb.2011.00169openalex-snapshot

From Wild Strain to Domesticated Strain: The Philosophy of Microbial Diversity in Foods

inferred← citeshttps://doi.org/10.3389/fmicb.2018.00090openalex-snapshot

Oenococcus oeni in Chilean Red Wines: Technological and Genomic Characterization

inferred← citeshttps://doi.org/10.3389/fmicb.2018.00291openalex-snapshot

Mapping the Physiological Response of Oenococcus oeni to Ethanol Stress Using an Extended Genome-Scale Metabolic Model

inferred← citeshttps://doi.org/10.3389/fmicb.2020.596541openalex-snapshot

Characterization of the First Virulent Phage Infecting Oenococcus oeni, the Queen of the Cellars

inferred← citeshttps://doi.org/10.3389/fmicb.2021.736789openalex-snapshot

Oenococcus oeni Lifestyle Modulates Wine Volatilome and Malolactic Fermentation Outcome

inferred← citeshttps://doi.org/10.3389/fmicb.2025.1657712openalex-snapshot

A reassessment of the infra-species diversity patterns in the wine-associated Oenococcus oeni

inferred← citeshttps://doi.org/10.3390/md15070213openalex-snapshot

Genome Sequences of Marine Shrimp Exopalaemon carinicauda Holthuis Provide Insights into Genome Size Evolution of Caridea

inferred← citeshttps://doi.org/10.3390/microorganisms9040856openalex-snapshot

Distribution of Prophages in the Oenococcus oeni Species

inferred← citeshttps://doi.org/10.3410/f1000research.1-16.v1openalex-snapshot

Is the pan-genome also a pan-selectome?

inferred← citeshttps://doi.org/10.70675/09c43d24z25f3z4d43z9c40zdcecbea7eb32openalex-snapshot

Bactériophages infectant la bactérie lactique Oenococcus oeni : diversité et rôles dans l'écosystème oenologique

inferred← citeshttps://doi.org/10.70675/2388969dz6b30z4402zb34cz2172eebe7be7openalex-snapshot

Diversity and genomic characteristics of Oenococcus oeni

inferred← citeshttps://doi.org/10.70675/24be892dz31ddz42e9z9a9dz2504afd676aaopenalex-snapshot

Etude de la diversité des souches d’Oenococcus oeni responsables de la fermentation malolactique des vins dans différentes régions vitivinicoles

inferred← citeshttps://doi.org/10.70675/902cde75za1a5z4c44zadc3zd89e019a4958openalex-snapshot

Étude de la tolérance à l’acidité et aux polyphénols chez Oenococcus oeni, de la caractérisation des effets à l’identification des mécanismes de réponse aux stress

inferred← citeshttps://doi.org/10.70675/a34fb787zb479z41deza686z0356d08abd2fopenalex-snapshot

La lysogénie dans l'espèce Oenococcus oeni : incidence et impacts sur la performance de levains malolactiques

inferred← citeshttps://doi.org/10.70675/d473c943z420fz449cza66ezcd8c0b5257d0openalex-snapshot

Experimental evolution of the wine-associated bacterium Oenococcus oeni in extreme environments : application to the selection of improved malolactic starters

inferred← citeshttps://doi.org/10.70675/dd0af923z80d1z4b78zbc93z591d9d352cddopenalex-snapshot

Phylogenomic Structure of Oenococcus oeni and its Adaptation to Different Products Unveiled by Comparative Genomics and Metabolomics.

inferred← citeshttps://doi.org/10.70675/ff94577azbd3dz406az95daz8dbc19f50d2aopenalex-snapshot

Bioversité des oenocoques dans les boissons fermentées et modalités d'intéractions avec leurs bactériophages

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