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Oenococcus Pseudoeni Sp. Nov., a Lactic Acid Bacterium Isolated from French Cider

https://doi.org/10.2139/ssrn.4679995
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Sequence Analysis of Leuconostoc œnos DNA: Organization of pLo13, a Cryptic Plasmid
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Nucleotide Sequence Analysis of pRS2 and pRS3, Two Small Cryptic Plasmids from Oenococcus oeni
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A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
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Distribution of Oenococcus oeni populations in natural habitats
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Oenococcus alcoholitolerans sp. nov., a lactic acid bacteria isolated from cachaça and ethanol fermentation processes
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A time-efficient, linear-space local similarity algorithm
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Multiplex PCR for rapid identification of major lactic acid bacteria genera in cider and other fermented foods
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Rapid identification of dairy lactic acid bacteria by M13-generated, RAPD-PCR fingerprint databases
inferredcites →https://doi.org/10.1016/j.syapm.2018.12.006openalex-extracted
Oenococcus sicerae sp. nov., isolated from French cider
inferredcites →https://doi.org/10.1046/j.1365-2672.2003.01985.xopenalex-extracted
Typification of Oenococcus oeni strains by multiplex RAPD-PCR and study of population dynamics during malolactic fermentation
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Design and evaluation of malolactic enzyme gene targeted primers for rapid identification and detection of Oenococcus oeni in wine
inferredcites →https://doi.org/10.1073/pnas.0906412106openalex-extracted
Shifting the genomic gold standard for the prokaryotic species definition
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-extracted
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1089/cmb.2013.0084openalex-extracted
Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-extracted
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/gbe/evv084openalex-extracted
Phylogenomic Analysis of Oenococcus oeni Reveals Specific Domestication of Strains to Cider and Wines
inferredcites →https://doi.org/10.1093/molbev/mst012openalex-extracted
Building Phylogenetic Trees from Molecular Data with MEGA
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-extracted
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/gkm160openalex-extracted
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/nar/gkm836openalex-extracted
Characterization of bacterial operons consisting of two tubulins and a kinesin-like gene by the novel Two-Step Gene Walking method
inferredcites →https://doi.org/10.1093/nar/gkt376openalex-extracted
Analysis Tool Web Services from the EMBL-EBI
inferredcites →https://doi.org/10.1093/oso/9780195135848.001.0001openalex-extracted
Molecular Evolution and Phylogenetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-extracted
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
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Report of the Ad Hoc Committee on Reconciliation of Approaches to Bacterial Systematics
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Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology
inferredcites →https://doi.org/10.1099/00207713-45-2-395openalex-extracted
Proposal To Reclassify Leuconostoc oenos as Oenococcus oeni [corrig.] gen. nov., comb. nov.
inferredcites →https://doi.org/10.1099/ijs.0.000305openalex-extracted
Leuconostoc rapi sp. nov., isolated from sous-vide-cooked rutabaga
inferredcites →https://doi.org/10.1099/ijs.0.059980-0openalex-extracted
Lactobacillus sicerae sp. nov., a lactic acid bacterium isolated from Spanish natural cider
inferredcites →https://doi.org/10.1099/ijs.0.64288-0openalex-extracted
Oenococcus kitaharae sp. nov., a non-acidophilic and non-malolactic-fermenting oenococcus isolated from a composting distilled shochu residue
inferredcites →https://doi.org/10.1099/ijsem.0.000760openalex-extracted
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
inferredcites →https://doi.org/10.1099/ijsem.0.001930openalex-extracted
A proposal of Leuconostoc mesenteroides subsp. jonggajibkimchii subsp. nov. and reclassification of Leuconostoc mesenteroides subsp. suionicum (Gu et al., 2012) as Leuconostoc suionicum sp. nov. based on complete genome sequences
inferredcites →https://doi.org/10.1111/j.1472-765x.2003.01462.xopenalex-extracted
Rapid detection of Oenococcus oeni in wine by real-time quantitative PCR
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CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP
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Applicability of rep-PCR fingerprinting for identification of Lactobacillus species
inferredcites →https://doi.org/10.1111/j.1755-0238.2005.tb00286.xopenalex-extracted
Oenococcus oeni and malolactic fermentation – moving into the molecular arena
inferredcites →https://doi.org/10.1128/aem.02194-08openalex-extracted
Oenococcus oeni Genome Plasticity Is Associated with Fitness
inferredcites →https://doi.org/10.1128/aem.02322-16openalex-extracted
Biogeography of Oenococcus oeni Reveals Distinctive but Nonspecific Populations in Wine-Producing Regions
inferredcites →https://doi.org/10.1128/aem.70.12.7210-7219.2004openalex-extracted
Allelic Diversity and Population Structure inOenococcus oenias Determined from Sequence Analysis of Housekeeping Genes
inferredcites →https://doi.org/10.1128/mr.60.2.407-438.1996openalex-extracted
Polyphasic taxonomy, a consensus approach to bacterial systematics
inferredcites →https://doi.org/10.1186/1471-2105-14-60openalex-extracted
Genome sequence-based species delimitation with confidence intervals and improved distance functions
inferredcites →https://doi.org/10.1186/s12864-016-2604-7openalex-extracted
Consensus pan-genome assembly of the specialised wine bacterium Oenococcus oeni
inferredcites →https://doi.org/10.1371/journal.pone.0029626openalex-extracted
Functional Divergence in the Genus Oenococcus as Predicted by Genome Sequencing of the Newly-Described Species, Oenococcus kitaharae
inferredcites →https://doi.org/10.1371/journal.pone.0049082openalex-extracted
Identification of pOENI-1 and Related Plasmids in Oenococcus oeni Strains Performing the Malolactic Fermentation in Wine
inferredcites →https://doi.org/10.2307/2408678openalex-extracted
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