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The Virome of Healthy Honey Bee Colonies: Ubiquitous Occurrence of Known and New Viruses in Bee Populations
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/jipa.1998.4807openalex-snapshot
The Transmission of Deformed Wing Virus between Honeybees (Apis melliferaL.) by the Ectoparasitic MiteVarroa jacobsoniOud
inferredcites →https://doi.org/10.1016/j.cois.2015.01.015openalex-snapshot
Honey bee colony losses and associated viruses
inferredcites →https://doi.org/10.1016/j.cois.2018.02.009openalex-snapshot
Recently identified bee viruses and their impact on bee pollinators
inferredcites →https://doi.org/10.1016/j.jksus.2020.101247openalex-snapshot
Honey bee gut an unexpected niche of human pathogen
inferredcites →https://doi.org/10.1016/j.virusres.2010.01.002openalex-snapshot
A systematic approach to virus–virus interactions
inferredcites →https://doi.org/10.1016/j.virusres.2015.02.019openalex-snapshot
Genome sequence heterogeneity of Lake Sinai Virus found in honey bees and Orf1/RdRP-based polymorphisms in a single host
inferredcites →https://doi.org/10.1023/a:1006456720416openalex-snapshot
Varroa jacobsoni (Acari: Varroidae) is more than one species
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
Fast and sensitive protein alignment using DIAMOND
inferredcites →https://doi.org/10.1038/s41467-019-08303-0openalex-snapshot
Genomic diversity landscape of the honey bee gut microbiota
inferredcites →https://doi.org/10.1038/s41587-019-0100-8openalex-snapshot
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
inferredcites →https://doi.org/10.1038/s41587-020-00774-7openalex-snapshot
CheckV assesses the quality and completeness of metagenome-assembled viral genomes
inferredcites →https://doi.org/10.1038/s41598-017-07290-wopenalex-snapshot
Absence of deformed wing virus and Varroa destructor in Australia provides unique perspectives on honeybee viral landscapes and colony losses
inferredcites →https://doi.org/10.1038/s41598-018-27164-zopenalex-snapshot
Investigating the viral ecology of global bee communities with high-throughput metagenomics
inferredcites →https://doi.org/10.1038/s41598-019-47447-3openalex-snapshot
Deformed wing virus type A, a major honey bee pathogen, is vectored by the mite Varroa destructor in a non-propagative manner
inferredcites →https://doi.org/10.1038/srep16532openalex-snapshot
Modular approach to customise sample preparation procedures for viral metagenomics: a reproducible protocol for virome analysis
inferredcites →https://doi.org/10.1038/srep37710openalex-snapshot
Two novel viruses associated with the Apis mellifera pathogenic mite Varroa destructor
inferredcites →https://doi.org/10.1046/j.1365-2664.2001.00662.xopenalex-snapshot
The role of Varroa and viral pathogens in the collapse of honeybee colonies: a modelling approach
inferredcites →https://doi.org/10.1051/apido/2009027openalex-snapshot
Biodiversity, conservation and current threats to European honeybees
inferredcites →https://doi.org/10.1051/apido:2000145openalex-snapshot
Interactions among Varroa jacobsoni mites, acute paralysis virus, and Paenibacillus larvae larvae and their influence on mortality of larval honeybees in vitro
inferredcites →https://doi.org/10.1051/apido:2002027openalex-snapshot
First report of Varroa destructor resistance to pyrethroids in the UK
inferredcites →https://doi.org/10.1051/apido:2007026openalex-snapshot
Viral load estimation in asymptomatic honey bee colonies using the quantitative RT-PCR technique
inferredcites →https://doi.org/10.1073/pnas.1921859117openalex-snapshot
Honey-bee–associated prokaryotic viral communities reveal wide viral diversity and a profound metabolic coding potential
inferredcites →https://doi.org/10.1073/pnas.2000228117openalex-snapshot
Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota
inferredcites →https://doi.org/10.1080/00218839.2020.1797272openalex-snapshot
Honey bee colony winter loss rates for 35 countries participating in the COLOSS survey for winter 2018–2019, and the effects of a new queen on the risk of colony winter loss
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp348openalex-snapshot
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btx657openalex-snapshot
heatmaply: an R package for creating interactive cluster heatmaps for online publishing
inferredcites →https://doi.org/10.1093/jipm/pmz036openalex-snapshot
Biology and Management of Varroa destructor (Mesostigmata: Varroidae) in Apis mellifera (Hymenoptera: Apidae) Colonies
inferredcites →https://doi.org/10.1093/molbev/msz189openalex-snapshot
ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
inferredcites →https://doi.org/10.1093/nar/gki198openalex-snapshot
MAFFT version 5: improvement in accuracy of multiple sequence alignment
inferredcites →https://doi.org/10.1093/nar/gkz239openalex-snapshot
Interactive Tree Of Life (iTOL) v4: recent updates and new developments
inferredcites →https://doi.org/10.1093/nar/gkz915openalex-snapshot
CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1098/rspb.2006.3721openalex-snapshot
Importance of pollinators in changing landscapes for world crops
inferredcites →https://doi.org/10.1098/rspb.2017.2140openalex-snapshot
The worldwide importance of honey bees as pollinators in natural habitats
inferredcites →https://doi.org/10.1099/0022-1317-46-1-149openalex-snapshot
Small Virus-like Particles in Honey Bees associated with Chronic Paralysis Virus and with a Previously Undescribed Disease
inferredcites →https://doi.org/10.1099/jgv.0.001073openalex-snapshot
Metagenomic analysis of Varroa-free Australian honey bees (Apis mellifera) shows a diverse Picornavirales virome
inferredcites →https://doi.org/10.1099/vir.0.025940-0openalex-snapshot
Horizontal transmission of deformed wing virus: pathological consequences in adult bees (Apis mellifera) depend on the transmission route
inferredcites →https://doi.org/10.1101/2020.09.15.298042openalex-snapshot
Hymenoptera associated eukaryotic virome lacks host specificity
inferredcites →https://doi.org/10.1111/1365-2656.13493openalex-snapshot
Adaptation to vector‐based transmission in a honeybee virus
inferredcites →https://doi.org/10.1111/1462-2920.12426openalex-snapshot
Bees under stress: sublethal doses of a neonicotinoid pesticide and pathogens interact to elevate honey bee mortality across the life cycle
inferredcites →https://doi.org/10.1111/1758-2229.12052openalex-snapshot
Do the honeybee pathogens N osema ceranae and deformed wing virus act synergistically?
inferredcites →https://doi.org/10.1126/science.1220941openalex-snapshot
Global Honey Bee Viral Landscape Altered by a Parasitic Mite
inferredcites →https://doi.org/10.1126/science.aac9976openalex-snapshot
Deformed wing virus is a recent global epidemic in honeybees driven by Varroa mites
inferredcites →https://doi.org/10.1128/jvi.00158-17openalex-snapshot
A Diverse Range of Novel RNA Viruses in Geographically Distinct Honey Bee Populations
inferredcites →https://doi.org/10.1146/annurev-virology-092818-015700openalex-snapshot
Deformed Wing Virus in Honeybees and Other Insects
inferredcites →https://doi.org/10.1186/1471-2105-12-385openalex-snapshot
Interactive metagenomic visualization in a Web browser
inferredcites →https://doi.org/10.1186/1471-2105-8-209openalex-snapshot
CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
inferredcites →https://doi.org/10.1186/s40168-020-00990-yopenalex-snapshot
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
inferredcites →https://doi.org/10.1371/journal.pone.0006481openalex-snapshot
Colony Collapse Disorder: A Descriptive Study
inferredcites →https://doi.org/10.1371/journal.pone.0020656openalex-snapshot
Temporal Analysis of the Honey Bee Microbiome Reveals Four Novel Viruses and Seasonal Prevalence of Known Viruses, Nosema, and Crithidia
inferredcites →https://doi.org/10.1371/journal.pone.0037235openalex-snapshot
Insect Pollinated Crops, Insect Pollinators and US Agriculture: Trend Analysis of Aggregate Data for the Period 1992–2009
inferredcites →https://doi.org/10.1371/journal.pone.0043562openalex-snapshot
Pathogen Webs in Collapsing Honey Bee Colonies
inferredcites →https://doi.org/10.1371/journal.pone.0057459openalex-snapshot
Metagenomic Detection of Viral Pathogens in Spanish Honeybees: Co-Infection by Aphid Lethal Paralysis, Israel Acute Paralysis and Lake Sinai Viruses
inferredcites →https://doi.org/10.1371/journal.pone.0057540openalex-snapshot
Varroa-Virus Interaction in Collapsing Honey Bee Colonies
inferredcites →https://doi.org/10.1371/journal.pone.0072443openalex-snapshot
Comprehensive Bee Pathogen Screening in Belgium Reveals Crithidia mellificae as a New Contributory Factor to Winter Mortality
inferredcites →https://doi.org/10.1371/journal.pone.0217822openalex-snapshot
RNA virus spillover from managed honeybees (Apis mellifera) to wild bumblebees (Bombus spp.)
inferredcites →https://doi.org/10.1371/journal.ppat.1004230openalex-snapshot
A Virulent Strain of Deformed Wing Virus (DWV) of Honeybees (Apis mellifera) Prevails after Varroa destructor-Mediated, or In Vitro, Transmission
inferredcites →https://doi.org/10.3389/fmicb.2020.00620openalex-snapshot
Accumulation and Competition Amongst Deformed Wing Virus Genotypes in Naïve Australian Honeybees Provides Insight Into the Increasing Global Prevalence of Genotype B
inferredcites →https://doi.org/10.3390/insects11040239openalex-snapshot
Diversity and Global Distribution of Viruses of the Western Honey Bee, Apis mellifera
inferredcites →https://doi.org/10.3390/v11020094openalex-snapshot
New Viruses from the Ectoparasite Mite Varroa destructor Infesting Apis mellifera and Apis cerana
inferredcites →https://doi.org/10.3390/v7062772openalex-snapshot
Honey Bee Infecting Lake Sinai Viruses
inferredcites →https://doi.org/10.3896/ibra.1.52.4.22openalex-snapshot
Standard methods for virus research in Apis mellifera
inferredcites →https://doi.org/10.48550/arxiv.1201.0490openalex-snapshot
Scikit-learn: Machine Learning in Python
inferredcites →https://doi.org/10.7717/peerj.6305openalex-snapshot
Relative abundance and molecular evolution of Lake Sinai Virus (Sinaivirus) clades
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/mbmg.9.165436zenodo-depositor-declared
Surface swabs outperform most traditional honeybee (Apis mellifera) hive samples for recovery of eDNA and eRNA
inferred← citeshttps://doi.org/10.1002/pmic.202300312openalex-snapshot
Varroa destructor parasitism and Deformed wing virus infection in honey bees are linked to peroxisome‐induced pathways
inferred← citeshttps://doi.org/10.1007/s00217-025-04939-zopenalex-snapshot
Profile of honey, bee pollen and bee bread: comparative shotgun sequencing
inferred← citeshttps://doi.org/10.1016/b978-0-323-95424-2.00004-2openalex-snapshot
Insect-associated viruses: Effects on host immunity and fitness
inferred← citeshttps://doi.org/10.1016/j.isci.2025.113872openalex-snapshot
Ocrelizumab transiently alters microbiota and modulates immune response depending on treatment outcome
inferred← citeshttps://doi.org/10.1016/j.jip.2025.108341openalex-snapshot
RNA metagenomics revealed insights into the viromes of honey bees (Apis mellifera) and Varroa mites (Varroa destructor) in Taiwan
inferred← citeshttps://doi.org/10.1016/j.jip.2025.108436openalex-snapshot
Landscape-scale virome analysis uncovers endemic and emerging honey bee viruses in the Silk-Road hub of Uzbekistan
inferred← citeshttps://doi.org/10.1016/j.jrurstud.2026.104304openalex-snapshot
Biodiversity heritage and transformation of beekeeping: From tradition to sustainability
inferred← citeshttps://doi.org/10.1016/j.microb.2026.100762openalex-snapshot
Entomopathogenic viruses: Implications for insect product safety and international trade
inferred← citeshttps://doi.org/10.1080/00218839.2025.2455852openalex-snapshot
Standard methods and good practices in Apis honey bee omics research
inferred← citeshttps://doi.org/10.1080/00218839.2026.2718599openalex-snapshot
Molecular and phylogenetic analysis of RNA viruses isolated from honey bee population from Bulgaria
inferred← citeshttps://doi.org/10.1111/1758-2229.70097openalex-snapshot
Honey Bee Viromes From Varroa destructor ‐Resistant and Susceptible Colonies
inferred← citeshttps://doi.org/10.1128/jvi.01149-23openalex-snapshot
Virus replication in the honey bee parasite, Varroa destructor
inferred← citeshttps://doi.org/10.1128/msystems.00088-24openalex-snapshot
Discovery and characterization of novel DNA viruses in Apis mellifera : expanding the honey bee virome through metagenomic analysis
inferred← citeshttps://doi.org/10.1128/spectrum.01439-23openalex-snapshot
Virome Analysis Provides an Insight into the Viral Community of Chinese Mitten Crab Eriocheir sinensis
inferred← citeshttps://doi.org/10.1128/spectrum.01971-25openalex-snapshot
Insights into the viral landscape of the western honey bee and native bees in Bangladesh
inferred← citeshttps://doi.org/10.1146/annurev-ento-121423-013439openalex-snapshot
Heritable Viruses as Hidden Drivers of Insect Phenotypes and Evolution
inferred← citeshttps://doi.org/10.1155/tbed/5065424openalex-snapshot
Pathogen and Hemocyte Dynamics in Three Apiaries Across a Bee Season
inferred← citeshttps://doi.org/10.3389/fcimb.2023.1124596openalex-snapshot
Metagenomic analysis of viromes in honey bee colonies (Apis mellifera; Hymenoptera: Apidae) after mass disappearance in Korea
inferred← citeshttps://doi.org/10.3390/app16073521openalex-snapshot
First Molecular and Metagenomic Investigation of the Italian Honey Bee (Apis mellifera) Microbiome
inferred← citeshttps://doi.org/10.3390/biology14010088openalex-snapshot
Investigating Aerobic Hive Microflora: Role of Surface Microbiome of Apis Mellifera
inferred← citeshttps://doi.org/10.3390/v14061303openalex-snapshot
The Present and Future of Virology in the Czech Republic—A New Phoenix Made of Ashes?
inferred← citeshttps://doi.org/10.3390/v16091486openalex-snapshot
Extensive Diversity of Viruses in Millipedes Collected in the Dong Nai Biosphere Reserve (Vietnam)
inferred← citeshttps://doi.org/10.3390/v17020201openalex-snapshot
Identification of Diverse Bacteriophages Associated with Bees and Hoverflies
inferred← citeshttps://doi.org/10.3390/vetsci11080369openalex-snapshot
Molecular Detection and Phylogenetic Relationships of Honey Bee-Associated Viruses in Bee Products
inferred← citeshttps://doi.org/10.4149/neo_2023_220703n681openalex-snapshot
Urinary shedding of common DNA viruses and their possible association with bladder cancer: a qPCR-based study
inferred← citeshttps://doi.org/10.64898/2026.06.11.731771openalex-snapshot
Primary and secondary antiviral RNAi responses throughout Varroa destructor life stages reveal the vertical transmission of viruses
inferred← citeshttps://doi.org/10.70562/tubid.1820131openalex-snapshot
Varroa destructor ve Taşıdığı Virüsler
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