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Exciting times to study the identity and evolution of cell types

https://doi.org/10.1242/dev.178996
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Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.201700024openalex-snapshot
Evolutionary origin of synapses and neurons – Bridging the gap
inferredcites →https://doi.org/10.1016/j.cell.2014.09.003openalex-snapshot
Evolution of DNA Specificity in a Transcription Factor Family Produced a New Gene Regulatory Module
inferredcites →https://doi.org/10.1016/j.cell.2018.05.019openalex-snapshot
Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq
inferredcites →https://doi.org/10.1016/j.cell.2018.05.057openalex-snapshot
A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain
inferredcites →https://doi.org/10.1016/j.conb.2019.01.022openalex-snapshot
Evolution of neuronal types and families
inferredcites →https://doi.org/10.1016/j.conb.2019.04.009openalex-snapshot
Evolution of neuronal identity in the cerebral cortex
inferredcites →https://doi.org/10.1016/j.cub.2014.05.046openalex-snapshot
Novel Cell Types, Neurosecretory Cells, and Body Plan of the Early-Diverging Metazoan Trichoplax adhaerens
inferredcites →https://doi.org/10.1016/j.cub.2018.08.067openalex-snapshot
High Cell Diversity and Complex Peptidergic Signaling Underlie Placozoan Behavior
inferredcites →https://doi.org/10.1038/nature09645openalex-snapshot
Emerging properties of animal gene regulatory networks
inferredcites →https://doi.org/10.1038/nature17398openalex-snapshot
The genetic program for cartilage development has deep homology within Bilateria
inferredcites →https://doi.org/10.1038/nature20111openalex-snapshot
Evolution of Osteocrin as an activity-regulated factor in the primate brain
inferredcites →https://doi.org/10.1038/nature22796openalex-snapshot
Multilineage communication regulates human liver bud development from pluripotency
inferredcites →https://doi.org/10.1038/ncomms3325openalex-snapshot
The Capsaspora genome reveals a complex unicellular prehistory of animals
inferredcites →https://doi.org/10.1038/nmeth.4463openalex-snapshot
SCENIC: single-cell regulatory network inference and clustering
inferredcites →https://doi.org/10.1038/nrg.2016.127openalex-snapshot
The origin and evolution of cell types
inferredcites →https://doi.org/10.1038/s41559-017-0285-5openalex-snapshot
Gut-like ectodermal tissue in a sea anemone challenges germ layer homology
inferredcites →https://doi.org/10.1038/s41559-018-0575-6openalex-snapshot
Early metazoan cell type diversity and the evolution of multicellular gene regulation
inferredcites →https://doi.org/10.1038/s41559-019-0813-6openalex-snapshot
A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons
inferredcites →https://doi.org/10.1038/s41586-018-0590-4openalex-snapshot
Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris
inferredcites →https://doi.org/10.1038/s41586-018-0734-6openalex-snapshot
Amphioxus functional genomics and the origins of vertebrate gene regulation
inferredcites →https://doi.org/10.1038/s41586-019-1691-4openalex-snapshot
Evolution of the new head by gradual acquisition of neural crest regulatory circuits
inferredcites →https://doi.org/10.1038/s41592-019-0367-1openalex-snapshot
cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data
inferredcites →https://doi.org/10.1073/pnas.0508313103openalex-snapshot
Lamprey type II collagen and Sox9 reveal an ancient origin of the vertebrate collagenous skeleton
inferredcites →https://doi.org/10.1073/pnas.0605630103openalex-snapshot
Hagfish and lancelet fibrillar collagens reveal that type II collagen-based cartilage evolved in stem vertebrates
inferredcites →https://doi.org/10.1091/mbc.e18-08-0514openalex-snapshot
Transfection of choanoflagellates illuminates their cell biology and the ancestry of animal septins
inferredcites →https://doi.org/10.1093/gbe/evy016openalex-snapshot
Pervasive Correlated Evolution in Gene Expression Shapes Cell and Tissue Type Transcriptomes
inferredcites →https://doi.org/10.1101/gad.302935.117openalex-snapshot
Uniform gene expression in embryos is achieved by temporal averaging of transcription noise
inferredcites →https://doi.org/10.1126/science.aaq0681openalex-snapshot
Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration
inferredcites →https://doi.org/10.1126/science.aaq1723openalex-snapshot
Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics
inferredcites →https://doi.org/10.1126/science.aar4237openalex-snapshot
Evolution of pallium, hippocampus, and cortical cell types revealed by single-cell transcriptomics in reptiles
inferredcites →https://doi.org/10.1126/science.aay2346openalex-snapshot
Light-regulated collective contractility in a multicellular choanoflagellate
inferredcites →https://doi.org/10.1186/s13059-019-1812-2openalex-snapshot
MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions
inferredcites →https://doi.org/10.1371/journal.pbio.2005594openalex-snapshot
The mammalian decidual cell evolved from a cellular stress response
inferredcites →https://doi.org/10.1371/journal.pbio.3000226openalex-snapshot
The architecture of cell differentiation in choanoflagellates and sponge choanocytes
inferredcites →https://doi.org/10.7554/elife.24197openalex-snapshot
Insights into electrosensory organ development, physiology and evolution from a lateral line-enriched transcriptome
inferredcites →https://doi.org/10.7554/elife.26036openalex-snapshot
Dynamics of genomic innovation in the unicellular ancestry of animals
inferredcites →https://doi.org/10.7554/elife.34226openalex-snapshot
Gene family innovation, conservation and loss on the animal stem lineage

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted
Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
inferred← citeshttps://doi.org/10.1002/jmor.21502openalex-snapshot
Three‐dimensional fine structure of fibroblasts and other mesodermally derived tissues in the dermis of adults of the Bahamas lancelet (Chordata, Cephalohordata), as seen by serial block‐face scanning electron microscopy
inferred← citeshttps://doi.org/10.1016/j.cdev.2024.203924openalex-snapshot
Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early vertebrate evolution
inferred← citeshttps://doi.org/10.1016/j.celrep.2021.108803openalex-snapshot
Tracing cell-type evolution by cross-species comparison of cell atlases
inferred← citeshttps://doi.org/10.1016/j.gde.2020.06.014openalex-snapshot
Vertebrate brain regeneration – a community effort of fate-restricted precursor cell types
inferred← citeshttps://doi.org/10.1038/s41467-024-55019-xopenalex-snapshot
Molecular characterization of the sea lamprey retina illuminates the evolutionary origin of retinal cell types
inferred← citeshttps://doi.org/10.1093/molbev/msaa133openalex-snapshot
Venom Systems as Models for Studying the Origin and Regulation of Evolutionary Novelties
inferred← citeshttps://doi.org/10.1101/2023.08.30.555543openalex-snapshot
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
inferred← citeshttps://doi.org/10.1101/2023.12.10.571000openalex-snapshot
Molecular Characterization of the Sea Lamprey Retina Illuminates the Evolutionary Origin of Retinal Cell Types
inferred← citeshttps://doi.org/10.1111/brv.13063openalex-snapshot
Functional specialisation and coordination of myonuclei
inferred← citeshttps://doi.org/10.1146/annurev-genet-071719-020453openalex-snapshot
Plant Cell Identity in the Era of Single-Cell Transcriptomics
inferred← citeshttps://doi.org/10.1186/s12864-024-11030-6openalex-snapshot
Cross-species single-cell analysis reveals divergence and conservation of peripheral blood mononuclear cells
inferred← citeshttps://doi.org/10.32469/10355/94012openalex-snapshot
Regulation of fetal brain development in short versus long lived mice
inferred← citeshttps://doi.org/10.3389/fcell.2022.876825openalex-snapshot
Limb Mesoderm and Head Ectomesenchyme Both Express a Core Transcriptional Program During Chondrocyte Differentiation
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