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A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/ece3.586openalex-snapshot
Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
inferredcites →https://doi.org/10.1007/s00253-010-2585-4openalex-snapshot
Current state and perspectives of fungal DNA barcoding and rapid identification procedures
inferredcites →https://doi.org/10.1007/s13225-014-0291-8openalex-snapshot
Improving ITS sequence data for identification of plant pathogenic fungi
inferredcites →https://doi.org/10.1016/s0953-7562(09)80407-3openalex-snapshot
Length variation in the internal transcribed spacer of ribosomal DNA in chanterelles
inferredcites →https://doi.org/10.1017/s0953756201004725openalex-snapshot
The magnitude of fungal diversity: the 1.5 million species estimate revisited
inferredcites →https://doi.org/10.1017/s0953756203008542openalex-snapshot
Host-parasite relationships among bolete infecting Hypomyces species
inferredcites →https://doi.org/10.1038/ismej.2015.116openalex-snapshot
Tree diversity and species identity effects on soil fungi, protists and animals are context dependent
inferredcites →https://doi.org/10.1038/nmeth.2604openalex-snapshot
UPARSE: highly accurate OTU sequences from microbial amplicon reads
inferredcites →https://doi.org/10.1038/nrmicro2963openalex-snapshot
Fungal systematics: is a new age of enlightenment at hand?
inferredcites →https://doi.org/10.1073/pnas.1117018109openalex-snapshot
Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr381openalex-snapshot
UCHIME improves sensitivity and speed of chimera detection
inferredcites →https://doi.org/10.1093/database/bau061openalex-snapshot
Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi
inferredcites →https://doi.org/10.1093/gbe/evu082openalex-snapshot
Genome Comparison of Candida orthopsilosis Clinical Strains Reveals the Existence of Hybrids between Two Distinct Subspecies
inferredcites →https://doi.org/10.1093/nar/gkr1006openalex-snapshot
The International Nucleotide Sequence Database Collaboration
inferredcites →https://doi.org/10.1093/nar/gks002openalex-snapshot
Sample richness and genetic diversity as drivers of chimera formation in nSSU metagenetic analyses
inferredcites →https://doi.org/10.1093/nar/gks1084openalex-snapshot
The International Nucleotide Sequence Database Collaboration
inferredcites →https://doi.org/10.1094/phyto-100-8-0732openalex-snapshot
The Promise and Pitfalls of Sequence-Based Identification of Plant-Pathogenic Fungi and Oomycetes
inferredcites →https://doi.org/10.1099/13500872-142-5-1107openalex-snapshot
The frequency of chimeric molecules as a consequence of PCR co-amplification of 16S rRNA genes from different bacterial species
inferredcites →https://doi.org/10.1111/2041-210x.12073openalex-snapshot
Improved software detection and extraction of ITS1 and ITS 2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data
inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03129.xopenalex-snapshot
Hybridization among cryptic species of the cellar fungus Coniophora puteana (Basidiomycota)
inferredcites →https://doi.org/10.1111/j.1469-8137.2009.03160.xopenalex-snapshot
The UNITE database for molecular identification of fungi – recent updates and future perspectives
inferredcites →https://doi.org/10.1111/j.1469-8137.2010.03373.xopenalex-snapshot
454 Pyrosequencing and Sanger sequencing of tropical mycorrhizal fungi provide similar results but reveal substantial methodological biases
inferredcites →https://doi.org/10.1111/j.1567-1364.2006.00126.xopenalex-snapshot
Natural hybrids fromSaccharomyces cerevisiae,Saccharomyces bayanusandSaccharomyces kudriavzeviiin wine fermentations
inferredcites →https://doi.org/10.1111/j.1574-6941.2012.01437.xopenalex-snapshot
New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities
inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02850.xopenalex-snapshot
An open source chimera checker for the fungal ITS region
inferredcites →https://doi.org/10.1111/mec.12481openalex-snapshot
Towards a unified paradigm for sequence‐based identification of fungi
inferredcites →https://doi.org/10.1111/mec.12660openalex-snapshot
Does host plant richness explain diversity of ectomycorrhizal fungi? Re‐evaluation of Gao et al. (2013) data sets reveals sampling effects
inferredcites →https://doi.org/10.1111/nph.12243openalex-snapshot
Fungal community analysis by high‐throughput sequencing of amplified markers – a user's guide
inferredcites →https://doi.org/10.1111/nph.12923openalex-snapshot
Parsing ecological signal from noise in next generation amplicon sequencing
inferredcites →https://doi.org/10.1126/science.1256688openalex-snapshot
Global diversity and geography of soil fungi
inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot
Removing Noise From Pyrosequenced Amplicons
inferredcites →https://doi.org/10.1186/1471-2148-8-87openalex-snapshot
Intergeneric transfer of ribosomal genes between two fungi
inferredcites →https://doi.org/10.1371/journal.pone.0024940openalex-snapshot
Tidying Up International Nucleotide Sequence Databases: Ecological, Geographical and Sequence Quality Annotation of ITS Sequences of Mycorrhizal Fungi
inferredcites →https://doi.org/10.1371/journal.pone.0040863openalex-snapshot
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
inferredcites →https://doi.org/10.3897/mycokeys.4.3606openalex-snapshot
Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences
inferredcites →https://doi.org/10.3897/mycokeys.8.8176openalex-snapshot
Tremella rhizocarpicola sp. nov. and other interesting lichenicolous Tremellales and Filobasidiales in the Nordic countries
inferredcites →https://doi.org/10.5943/cream/3/1/1openalex-snapshot
Incorporating molecular data in fungal systematics: a guide for aspiring researchers
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.3897/mycokeys.130.176937zenodo-depositor-declared
Desert mycobiome of Saudi Arabia is driven by vegetation patterns
inferred← citeshttps://doi.org/10.1002/ece3.10389openalex-snapshot
DNA isolation and genome sequence of the 134‐year‐old holotype specimen of Boletus subvelutipes Peck
inferred← citeshttps://doi.org/10.1002/ece3.71352openalex-snapshot
Protein Coding Low‐Copy rpb2 and ef1‐α Regions Are Viable Fungal Metabarcoding DNA Markers Which Can Supplement ITS for Better Accuracy
inferred← citeshttps://doi.org/10.1002/jsfa.70802openalex-snapshot
Nutrient addition and light supplementation modulate the growth of Glechoma longituba and soil microbial communities
inferred← citeshttps://doi.org/10.1002/lary.26702openalex-snapshot
Role of fungi in chronic rhinosinusitis through ITS sequencing
inferred← citeshttps://doi.org/10.1002/pmic.201600034openalex-snapshot
Strategies to improve usability and preserve accuracy in biological sequence databases
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Mycorrhizal communities of Vanilla planifolia in an introduction area (La Réunion) under varying cultivation practices
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Da Vinci's yeast: Blastobotrys davincii f.a., sp. nov
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Fungal Community Composition and Potential Depth-Related Driving Factors Impacting Distribution Pattern and Trophic Modes from Epi- to Abyssopelagic Zones of the Western Pacific Ocean
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Changes in Bacterial and Fungal Microbiomes Associated with Tomatoes of Healthy and Infected by Fusarium oxysporum f. sp. lycopersici
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Bacterial and Fungal Microbiota in Anopheles darlingi Exhibit Differences in Diversity Across Three Main Colombian Malaria-endemic Regions
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Isolation and Characterization of a Promising Lignocellulolytic Enzyme Producer Pseudolagarobasidium acaciicola SL3-03 from Mangrove Soil in Thailand
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Long-term and legacy effects of manure application on soil microbial community composition
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Temporal microbial succession drives phase-dependent kinetics of di(2-ethylhexyl) phthalate biodegradation in soil
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Taxonomic shifts in arbuscular mycorrhizal fungal communities with shade and soil nitrogen across conventionally managed and organic coffee agroecosystems
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Relevance of plant and fungal DNA metabarcoding in aerobiology
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Rhizosphere microbiome modulated effects of biochar on ryegrass 15N uptake and rhizodeposited 13C allocation in soil
inferred← citeshttps://doi.org/10.1007/s11104-024-06784-7openalex-snapshot
Drought acclimation of beech seedlings depends largely on their rooting patterns and less on the fungal communities in soils
inferred← citeshttps://doi.org/10.1007/s11104-024-06909-yopenalex-snapshot
Effects of earthworms on the performance of Lolium multiflorum, soil properties and microbial communities in its root-zone soil under cadmium stress
inferred← citeshttps://doi.org/10.1007/s11273-021-09848-yopenalex-snapshot
Spatial and temporal comparisons of salt marsh soil fungal communities following the deepwater horizon spill
inferred← citeshttps://doi.org/10.1007/s11356-022-23599-0openalex-snapshot
The co-occurrence network patterns and keystone species of microbial communities in cattle manure-corn straw composting
inferred← citeshttps://doi.org/10.1007/s11557-016-1241-5openalex-snapshot
Low diversity and abundance of root endophytes prevail throughout the life cycle of an annual halophyte
inferred← citeshttps://doi.org/10.1007/s11557-018-1415-4openalex-snapshot
ITS2 metabarcoding analysis complements lichen mycobiome diversity data
inferred← citeshttps://doi.org/10.1007/s12155-021-10363-4openalex-snapshot
Degradation of Sugarcane Bagasse by Cockroach Consortium Bacteria
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Prospects of endophytic fungi as a natural resource for the sustainability of crop production in the modern era of changing climate
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The Faces of Fungi database: fungal names linked with morphology, phylogeny and human impacts
inferred← citeshttps://doi.org/10.1007/s13225-018-0399-3openalex-snapshot
Direct comparison of culture-dependent and culture-independent molecular approaches reveal the diversity of fungal endophytic communities in stems of grapevine (Vitis vinifera)
inferred← citeshttps://doi.org/10.1007/s13225-021-00477-7openalex-snapshot
Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics
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Entomopathogen-based biological control of looper pests (old looper, Biston (= Buzura) suppressaria and emerging looper, Hyposidra Talaca): an in vitro sustainable approach for tea pest management
inferred← citeshttps://doi.org/10.1016/bs.mim.2023.11.002openalex-snapshot
Using next generation sequencing to study host-pathogen interactions
inferred← citeshttps://doi.org/10.1016/j.agee.2016.03.030openalex-snapshot
Geography and agronomical practices drive diversification of the epiphytic mycoflora associated with barley and its malt end product in western Canada
inferred← citeshttps://doi.org/10.1016/j.agee.2021.107805openalex-snapshot
Quantifying the immediate response of the soil microbial community to different grazing intensities on irrigated pastures
inferred← citeshttps://doi.org/10.1016/j.apsoil.2018.08.016openalex-snapshot
Effect of tillage and static abiotic soil properties on microbial diversity
inferred← citeshttps://doi.org/10.1016/j.apsoil.2019.07.019openalex-snapshot
Agroforestry alters the rhizosphere soil bacterial and fungal communities of moso bamboo plantations in subtropical China
inferred← citeshttps://doi.org/10.1016/j.apsoil.2019.103370openalex-snapshot
Native and invasive inoculation sources modify fungal community assembly and biomass production of a chaparral shrub
inferred← citeshttps://doi.org/10.1016/j.cell.2018.10.020openalex-snapshot
Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival
inferred← citeshttps://doi.org/10.1016/j.crfs.2024.100883openalex-snapshot
Microbial community assembly patterns at the species level in different parts of the medium temperature Daqu during fermentation
inferred← citeshttps://doi.org/10.1016/j.cropro.2020.105452openalex-snapshot
Development and application of a LAMP method for rapid detection of apple blotch caused by Marssonina coronaria
inferred← citeshttps://doi.org/10.1016/j.envpol.2022.119548openalex-snapshot
Insights into phenol monomers in response to electron transfer capacity of humic acid during corn straw composting process
inferred← citeshttps://doi.org/10.1016/j.envres.2025.122601openalex-snapshot
Soil carbon stabilization associated with iron-aluminum complexes and microbial communities in paddy
inferred← citeshttps://doi.org/10.1016/j.envres.2025.122638openalex-snapshot
A biologically−based regulatory method for the lignin phenol monomers to specific components and electron transfer capacity of humic substances
inferred← citeshttps://doi.org/10.1016/j.foodcont.2020.107467openalex-snapshot
Mycotoxin profiles of solar tent-dried and open sun-dried plantain chips
inferred← citeshttps://doi.org/10.1016/j.foodcont.2021.108572openalex-snapshot
Distribution of mycotoxin-producing fungi across major rice production areas of China
inferred← citeshttps://doi.org/10.1016/j.foodres.2022.111998openalex-snapshot
Applying meta-data of soybean grain in origin trace and quarantine inspection
inferred← citeshttps://doi.org/10.1016/j.foodres.2026.119633openalex-snapshot
Mapping spoilage microbiota in complex food systems: organisms, mechanisms, and omics-based characterization
inferred← citeshttps://doi.org/10.1016/j.foreco.2018.06.043openalex-snapshot
The impact of spatial isolation and local habitat conditions on colonization of recent forest stands by ectomycorrhizal fungi
inferred← citeshttps://doi.org/10.1016/j.foreco.2021.119429openalex-snapshot
Comparing eDNA metabarcoding with morphological analyses: Fungal species richness and community composition of differently managed stages along a forest conversion of Norway spruce towards European beech in Germany
inferred← citeshttps://doi.org/10.1016/j.funbio.2016.07.004openalex-snapshot
Hawksworthiomyces gen. nov. (Ophiostomatales), illustrates the urgency for a decision on how to name novel taxa known only from environmental nucleic acid sequences (ENAS)
inferred← citeshttps://doi.org/10.1016/j.funbio.2026.101858openalex-snapshot
Global emergence of novel genotypes and antifungal resistance in Trichosporon asahii revealed by IGS1 rDNA revision
inferred← citeshttps://doi.org/10.1016/j.funeco.2015.12.009openalex-snapshot
A cost-effective and efficient strategy for Illumina sequencing of fungal communities: A case study of beech endophytes identified elevation as main explanatory factor for diversity and community composition
inferred← citeshttps://doi.org/10.1016/j.funeco.2018.08.003openalex-snapshot
Effects of host species, environmental filtering and forest age on community assembly of ectomycorrhizal fungi in fragmented forests
inferred← citeshttps://doi.org/10.1016/j.funeco.2018.11.008openalex-snapshot
Responses of arbuscular mycorrhizal fungi to multiple coinciding global change drivers
inferred← citeshttps://doi.org/10.1016/j.funeco.2019.01.002openalex-snapshot
Fungal community assembly in soils and roots under plant invasion and nitrogen deposition
inferred← citeshttps://doi.org/10.1016/j.funeco.2019.03.005openalex-snapshot
Bioinformatics matters: The accuracy of plant and soil fungal community data is highly dependent on the metabarcoding pipeline
inferred← citeshttps://doi.org/10.1016/j.funeco.2023.101274openalex-snapshot
ITS alchemy: On the use of ITS as a DNA marker in fungal ecology
inferred← citeshttps://doi.org/10.1016/j.funeco.2026.101506openalex-snapshot
The distribution of mycorrhizal fungi on tree bark correlates with the host preference of the tropical epiphytic orchid Bulbophyllum variegatum on La Réunion island
inferred← citeshttps://doi.org/10.1016/j.funeco.2026.101521openalex-snapshot
Fungi-substrate association patterns in boreal forests
inferred← citeshttps://doi.org/10.1016/j.ibiod.2016.11.028openalex-snapshot
Analysis of dark crusts on the church of Nossa Senhora do Carmo in Rio de Janeiro, Brazil, using chemical, microscope and metabarcoding microbial identification techniques
inferred← citeshttps://doi.org/10.1016/j.ibiod.2019.05.008openalex-snapshot
Fungal diversity and distribution across distinct biodeterioration phenomena in limestone walls of the old cathedral of Coimbra, UNESCO World Heritage Site
inferred← citeshttps://doi.org/10.1016/j.ibiod.2020.104933openalex-snapshot
Analysis of fungal deterioration phenomena in the first Portuguese King tomb using a multi-analytical approach
inferred← citeshttps://doi.org/10.1016/j.jcmgh.2020.03.008openalex-snapshot
NOD2 Influences Trajectories of Intestinal Microbiota Recovery After Antibiotic Perturbation
inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.118574openalex-snapshot
Effect of planting salt-tolerant legumes on coastal saline soil nutrient availability and microbial communities
inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.118879openalex-snapshot
Short-term responses of the soil microbiome and its environment indicate an uncertain future of restored peatland forests
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2020.124985openalex-snapshot
Prevalence of antibiotic resistance genes and bacterial pathogens along the soil–mangrove root continuum
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2023.131621openalex-snapshot
Transgenic soybean of GsMYB10 shapes rhizosphere microbes to promote resistance to aluminum (Al) toxicity
inferred← citeshttps://doi.org/10.1016/j.mimet.2026.107447openalex-snapshot
Manual curation of aquatic fungal ITS2 metabarcoding OTU matrices increases community identification on the genus and species level
inferred← citeshttps://doi.org/10.1016/j.pedobi.2024.150934openalex-snapshot
Divergent responses between lineages of arbuscular mycorrhizal fungi to soil phosphorus and nitrogen availability
inferred← citeshttps://doi.org/10.1016/j.retram.2019.04.001openalex-snapshot
Contribution of the internal transcribed spacer regions to the detection and identification of human fungal pathogens
inferred← citeshttps://doi.org/10.1016/j.rhisph.2018.10.002openalex-snapshot
The ability of plants to produce strigolactones affects rhizosphere community composition of fungi but not bacteria
inferred← citeshttps://doi.org/10.1016/j.sajb.2019.12.030openalex-snapshot
ITS2 ribotyping, in vitro anti-inflammatory screening, and metabolic profiling of fungal endophytes from the Mexican species Crescentia alata Kunth
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2018.12.126openalex-snapshot
Using a combination of PLFA and DNA-based sequencing analyses to detect shifts in the soil microbial community composition after a simulated spring precipitation in a semi-arid grassland in China
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.06.473openalex-snapshot
Metabarcoding reveals differences in fungal communities between unflooded versus tidal flat soil in coastal saline ecosystem
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.140249openalex-snapshot
Environmental DNA assessment of airborne plant and fungal seasonal diversity
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.180357openalex-snapshot
Soil drivers of fungal, bacterial and plant diversity in contaminated Southern Californian sites: Implications for dryland bioremediation
inferred← citeshttps://doi.org/10.1016/j.soilbio.2017.03.019openalex-snapshot
Effects of titanium dioxide nanoparticles on soil microbial communities and wheat biomass
inferred← citeshttps://doi.org/10.1016/j.soilbio.2017.06.004openalex-snapshot
Root-associated fungal communities along a primary succession on a mine spoil: Distinct ecological guilds assemble differently
inferred← citeshttps://doi.org/10.1016/j.soilbio.2018.01.028openalex-snapshot
Long- and short-term effects of mercury pollution on the soil microbiome
inferred← citeshttps://doi.org/10.1016/j.soilbio.2020.107783openalex-snapshot
‘Home’ and ‘away’ litter decomposition depends on the size fractions of the soil biotic community
inferred← citeshttps://doi.org/10.1016/j.soilbio.2025.110055openalex-snapshot
Belowground perspectives: how plant functional type clipping reshapes soil fungal communities across peat depths
inferred← citeshttps://doi.org/10.1016/j.still.2019.104503openalex-snapshot
Long-term continuous cropping of soybean is comparable to crop rotation in mediating microbial abundance, diversity and community composition
inferred← citeshttps://doi.org/10.1016/j.tfp.2021.100153openalex-snapshot
Metabarcoding of root-associated ectomycorrhizal fungi of Himalayan pindrow fir through morphotyping and Next Generation Sequencing
inferred← citeshttps://doi.org/10.1038/ismej.2017.57openalex-snapshot
Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs
inferred← citeshttps://doi.org/10.1038/nclimate2806openalex-snapshot
Relationship between soil fungal diversity and temperature in the maritime Antarctic
inferred← citeshttps://doi.org/10.1038/s41396-018-0160-7openalex-snapshot
Taxonomic diversity of fungi deposited from the atmosphere
inferred← citeshttps://doi.org/10.1038/s41426-018-0049-6openalex-snapshot
Detection of Coccidioides posadasii from xerophytic environments in Venezuela reveals risk of naturally acquired coccidioidomycosis infections
inferred← citeshttps://doi.org/10.1038/s41467-019-12798-yopenalex-snapshot
Fungal-bacterial diversity and microbiome complexity predict ecosystem functioning
inferred← citeshttps://doi.org/10.1038/s41522-020-00164-6openalex-snapshot
Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale
inferred← citeshttps://doi.org/10.1038/s41597-026-07729-8openalex-snapshot
The FunAqua dataset of global fungal biodiversity in aquatic ecosystems
inferred← citeshttps://doi.org/10.1038/s41598-018-22505-4openalex-snapshot
Automated high throughput animal CO1 metabarcode classification
inferred← citeshttps://doi.org/10.1038/s41598-018-29027-zopenalex-snapshot
Combined Metabarcoding and Multi-locus approach for Genetic characterization of Colletotrichum species associated with common walnut (Juglans regia) anthracnose in France
inferred← citeshttps://doi.org/10.1038/s41598-019-39829-4openalex-snapshot
Intensive tropical land use massively shifts soil fungal communities
inferred← citeshttps://doi.org/10.1038/s41598-019-48943-2openalex-snapshot
Exploration of stem endophytic communities revealed developmental stage as one of the drivers of fungal endophytic community assemblages in two Amazonian hardwood genera
inferred← citeshttps://doi.org/10.1038/s41598-021-81996-wopenalex-snapshot
Comparison of DNA sequencing and morphological identification techniques to characterize environmental fungal communities
inferred← citeshttps://doi.org/10.1038/s42003-022-03726-wopenalex-snapshot
Longitudinal transmission of bacterial and fungal communities from seed to seed in rice
inferred← citeshttps://doi.org/10.1038/srep26528openalex-snapshot
Fungal communities in sediments of subtropical Chinese seas as estimated by DNA metabarcoding
inferred← citeshttps://doi.org/10.1080/08927014.2016.1269893openalex-snapshot
Epilithic and endolithic microorganisms and deterioration on stone church facades subject to urban pollution in a sub-tropical climate
inferred← citeshttps://doi.org/10.1080/17550874.2018.1504332openalex-snapshot
Host species identity in annual Brassicaceae has a limited effect on the assembly of root-endophytic fungal communities
inferred← citeshttps://doi.org/10.1080/19490976.2022.2149020openalex-snapshot
Dysbiotic but nonpathogenic shift in the fecal mycobiota of patients with rheumatoid arthritis
inferred← citeshttps://doi.org/10.1080/19490976.2024.2440111openalex-snapshot
The mycobiome as integral part of the gut microbiome: crucial role of symbiotic fungi in health and disease
inferred← citeshttps://doi.org/10.1080/21501203.2025.2460495openalex-snapshot
Unraveling the mycobiota of Daqu at the species level using metabarcoding of full-length ITS sequences
inferred← citeshttps://doi.org/10.1093/aob/mcy198openalex-snapshot
Remote tropical island colonization does not preclude symbiotic specialists: new evidence of mycorrhizal specificity across the geographic distribution of the Hawaiian endemic orchidAnoectochilus sandvicensis
inferred← citeshttps://doi.org/10.1093/femsec/fiaa056openalex-snapshot
The response of soil and phyllosphere microbial communities to repeated application of the fungicide iprodione: accelerated biodegradation or toxicity?
inferred← citeshttps://doi.org/10.1093/femsec/fiaa178openalex-snapshot
Soil P reduces mycorrhizal colonization while favors fungal pathogens: observational and experimental evidence in Bipinnula (Orchidaceae)
inferred← citeshttps://doi.org/10.1093/femsec/fiw018openalex-snapshot
Microbial diversity in European alpine permafrost and active layers
inferred← citeshttps://doi.org/10.1093/femsec/fix003openalex-snapshot
Occurrence of similar mycoviruses in pathogenic, saprotrophic and mycorrhizal fungi inhabiting the same forest stand
inferred← citeshttps://doi.org/10.1093/femsec/fiz056openalex-snapshot
Co-occurrence analysis reveal that biotic and abiotic factors influence soil fungistasis against Fusarium graminearum
inferred← citeshttps://doi.org/10.1093/femsre/fuad061openalex-snapshot
Mechanisms of Alternaria pathogenesis in animals and plants
inferred← citeshttps://doi.org/10.1093/femsre/fuw047openalex-snapshot
Forgotten fungi—the gut mycobiome in human health and disease
inferred← citeshttps://doi.org/10.1093/ismeco/ycag019openalex-snapshot
Detecting “invisible” Phytophthora lineages in publicly available sequencing data
inferred← citeshttps://doi.org/10.1093/nar/gkv1189openalex-snapshot
Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
inferred← citeshttps://doi.org/10.1093/sumbio/qvag031openalex-snapshot
Lignin enrichment selects specialized fungal communities from contrasting soils
inferred← citeshttps://doi.org/10.1094/pbiomes-09-17-0042-ropenalex-snapshot
Root-Associated Bacterial and Fungal Community Profiles ofArabidopsis thalianaAre Robust Across Contrasting Soil P Levels
inferred← citeshttps://doi.org/10.1094/phytofr-02-25-0017-ropenalex-snapshot
Fungal Community Profiling and Pathogen Detection in Conifer Seed Lots: Benchmarking Oxford Nanopore DNA Metabarcoding Against Conventional Methods
inferred← citeshttps://doi.org/10.1101/2021.06.24.449837openalex-snapshot
Macrosystem community assembly patterns are predicted by foundation tree species genetic connectivity and environment across the American Southwest
inferred← citeshttps://doi.org/10.1101/2021.07.21.453256openalex-snapshot
Forest tree species composition and abiotic site conditions drive soil fungal communities and functional groups
inferred← citeshttps://doi.org/10.1101/2023.09.24.559161openalex-snapshot
Responses of root-associated fungal communities of mature beech and spruce during five years of experimental drought
inferred← citeshttps://doi.org/10.1101/416818openalex-snapshot
Fungal community assembly in soils and roots under plant invasion and nitrogen deposition
inferred← citeshttps://doi.org/10.1101/761270openalex-snapshot
A missing link in mutualistic networks: symbiotic fungi in plant-animal interactions
inferred← citeshttps://doi.org/10.1111/1365-2745.13882openalex-snapshot
Root‐associated fungi not tree density influences stand nitrogen dynamics at the larch forest–tundra ecotone
inferred← citeshttps://doi.org/10.1111/1365-2745.13986openalex-snapshot
Spatial turnover of fungi and partner choice shape mycorrhizal networks in epiphytic orchids
inferred← citeshttps://doi.org/10.1111/1462-2920.13512openalex-snapshot
Fungal community composition in soils subjected to long‐term chemical fertilization is most influenced by the type of organic matter
inferred← citeshttps://doi.org/10.1111/1462-2920.14754openalex-snapshot
Targeted ITS1 sequencing unravels the mycodiversity of deep‐sea sediments from the Gulf of Mexico
inferred← citeshttps://doi.org/10.1111/1755-0998.12622openalex-snapshot
ITS all right mama: investigating the formation of chimeric sequences in the ITS 2 region by DNA metabarcoding analyses of fungal mock communities of different complexities
inferred← citeshttps://doi.org/10.1111/1755-0998.13756openalex-snapshot
COInr and mkCOInr : Building and customizing a nonredundant barcoding reference database from BOLD and NCBI using a semi‐automated pipeline
inferred← citeshttps://doi.org/10.1111/1755-0998.14056openalex-snapshot
Teknonaturalist: A Snakemake Pipeline for Assessing Fungal Diversity From Plant Genome Bycatch
inferred← citeshttps://doi.org/10.1111/1755-0998.70113openalex-snapshot
Sampling Design and Sample Processing Affect Soil Biodiversity Assessments
inferred← citeshttps://doi.org/10.1111/1758-2229.70212openalex-snapshot
Environmental Yeast Abundance and Diversity Assessment in Recreation Areas of Bangkok, Thailand
inferred← citeshttps://doi.org/10.1111/ele.14224openalex-snapshot
Fungal genome size and composition reflect ecological strategies along soil fertility gradients
inferred← citeshttps://doi.org/10.1111/gcb.17562openalex-snapshot
Peatland Fungal Community Responses to Nutrient Enrichment: A Story Beyond Nitrogen
inferred← citeshttps://doi.org/10.1111/jam.13546openalex-snapshot
Insect frass in stored cereal products as a potential source ofLactobacillus sanfranciscensisfor sourdough ecosystem
inferred← citeshttps://doi.org/10.1111/jam.14804openalex-snapshot
Fungal endophytes alleviate salt stress in wheat in terms of growth, ion homeostasis and osmoregulation
inferred← citeshttps://doi.org/10.1111/jbi.13594openalex-snapshot
Substrate and spatial variables are major determinants of fungal community in karst caves in Southwest China
inferred← citeshttps://doi.org/10.1111/lam.13257openalex-snapshot
First report of the oil palm disease fungus Marasmius palmivorus from Taiwan causing stem rot disease on native Formosa palm Arenga engleri as new host
inferred← citeshttps://doi.org/10.1111/mec.14440openalex-snapshot
Highlighting patterns of fungal diversity and composition shaped by ocean currents using the East China Sea as a model
inferred← citeshttps://doi.org/10.1111/mec.16125openalex-snapshot
Peatland microbial community responses to plant functional group and drought are depth‐dependent
inferred← citeshttps://doi.org/10.1111/mec.16918openalex-snapshot
Orchid–mycorrhizal fungi interactions reveal a duality in their network structure in two European regions differing in climate
inferred← citeshttps://doi.org/10.1111/nph.13988openalex-snapshot
Habitat conditions and phenological tree traits overrule the influence of tree genotype in the needle mycobiome– P icea glauca system at an arctic treeline ecotone
inferred← citeshttps://doi.org/10.1111/nph.14873openalex-snapshot
Facultative root‐colonizing fungi dominate endophytic assemblages in roots of nonmycorrhizal Microthlaspi species
inferred← citeshttps://doi.org/10.1111/nph.17459openalex-snapshot
A fine‐scale spatial analysis of fungal communities on tropical tree bark unveils the epiphytic rhizosphere in orchids
inferred← citeshttps://doi.org/10.1111/nph.19260openalex-snapshot
Ectomycorrhizal fungi integrate nitrogen mobilisation and mineral weathering in boreal forest soil
inferred← citeshttps://doi.org/10.1111/pce.14570openalex-snapshot
Root exudates and rhizosphere microbiomes jointly determine temporal shifts in plant‐soil feedbacks
inferred← citeshttps://doi.org/10.1111/pce.70019openalex-snapshot
Unveiling Potato Cultivars With Microbiome Interactive Traits for Sustainable Agricultural Production
inferred← citeshttps://doi.org/10.1111/vde.12826openalex-snapshot
The otic microbiota and mycobiota in a referral population of dogs in eastern USA with otitis externa
inferred← citeshttps://doi.org/10.1128/aem.00052-20openalex-snapshot
Contrasting Patterns of Functional Diversity in Coffee Root Fungal Communities Associated with Organic and Conventionally Managed Fields
inferred← citeshttps://doi.org/10.1128/aem.02355-23openalex-snapshot
Continuous planting of euhalophyte Suaeda salsa enhances microbial diversity and multifunctionality of saline soil
inferred← citeshttps://doi.org/10.1128/mbio.01058-16openalex-snapshot
Redefining the Chronic-Wound Microbiome: Fungal Communities Are Prevalent, Dynamic, and Associated with Delayed Healing
inferred← citeshttps://doi.org/10.1128/msystems.00741-19openalex-snapshot
Long-Term Phytoremediation of Coastal Saline Soil Reveals Plant Species-Specific Patterns of Microbial Community Recruitment
inferred← citeshttps://doi.org/10.1134/s106422932204010xopenalex-snapshot
Fungal Community Diversity in Solonchaks of Gansu Province in China
inferred← citeshttps://doi.org/10.1139/cjm-2016-0740openalex-snapshot
Fungal endophytes of wild and hybrid Vitis leaves and their potential for vineyard biocontrol
inferred← citeshttps://doi.org/10.1139/cjm-2026-0019openalex-snapshot
Biochar alters microbial community structure in experimental treatment wetlands exposed to pesticides
inferred← citeshttps://doi.org/10.1139/gen-2015-0189openalex-snapshot
Barcoding lichen-forming fungi using 454 pyrosequencing is challenged by artifactual and biological sequence variation
inferred← citeshttps://doi.org/10.1155/ijm/7563096openalex-snapshot
Benchmarking 16S rRNA Gene‐Based Approaches to Bacterial Taxonomy Assignment Based on Amplicon Sequencing With Illumina and Oxford Nanopore
inferred← citeshttps://doi.org/10.1186/s12866-020-01829-0openalex-snapshot
Human milk fungi: environmental determinants and inter-kingdom associations with milk bacteria in the CHILD Cohort Study
inferred← citeshttps://doi.org/10.1186/s12967-024-04917-1openalex-snapshot
Unraveling metagenomics through long-read sequencing: a comprehensive review
inferred← citeshttps://doi.org/10.1186/s13068-018-1073-4openalex-snapshot
Lignolytic-consortium omics analyses reveal novel genomes and pathways involved in lignin modification and valorization
inferred← citeshttps://doi.org/10.1186/s13213-025-01809-7openalex-snapshot
Legume-based rotation alters soil eukaryotic community and improves soil multifunctionality
inferred← citeshttps://doi.org/10.1186/s40168-015-0116-3openalex-snapshot
Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
inferred← citeshttps://doi.org/10.1186/s40168-016-0192-zopenalex-snapshot
Skin fungal community and its correlation with bacterial community of urban Chinese individuals
inferred← citeshttps://doi.org/10.1186/s40168-018-0512-6openalex-snapshot
Trichoderma polysporum selectively inhibits white-nose syndrome fungal pathogen Pseudogymnoascus destructans amidst soil microbes
inferred← citeshttps://doi.org/10.1186/s40168-018-0586-1openalex-snapshot
Association of bovine major histocompatibility complex (BoLA) gene polymorphism with colostrum and milk microbiota of dairy cows during the first week of lactation
inferred← citeshttps://doi.org/10.1186/s40168-020-00805-0openalex-snapshot
Domestication of Oryza species eco-evolutionarily shapes bacterial and fungal communities in rice seed
inferred← citeshttps://doi.org/10.1186/s40168-023-01468-3openalex-snapshot
Core-predominant gut fungus Kazachstania slooffiae promotes intestinal epithelial glycolysis via lysine desuccinylation in pigs
inferred← citeshttps://doi.org/10.1186/s40168-023-01693-wopenalex-snapshot
Shotgun metagenomics reveals interkingdom association between intestinal bacteria and fungi involving competition for nutrients
inferred← citeshttps://doi.org/10.1186/s40168-023-01708-6openalex-snapshot
Application of culturomics in fungal isolation from mangrove sediments
inferred← citeshttps://doi.org/10.1186/s42269-025-01385-5openalex-snapshot
Synergistic valorization: generating bioelectricity and high-protein animal feed from fermented crop residues
inferred← citeshttps://doi.org/10.1186/s43008-020-00033-zopenalex-snapshot
Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding?
inferred← citeshttps://doi.org/10.1371/journal.pone.0142759openalex-snapshot
Ribosomal DNA and Plastid Markers Used to Sample Fungal and Plant Communities from Wetland Soils Reveals Complementary Biotas
inferred← citeshttps://doi.org/10.1371/journal.pone.0152878openalex-snapshot
Diversity and Composition of the Leaf Mycobiome of Beech (Fagus sylvatica) Are Affected by Local Habitat Conditions and Leaf Biochemistry
inferred← citeshttps://doi.org/10.1371/journal.pone.0154385openalex-snapshot
Sequencer-Based Capillary Gel Electrophoresis (SCGE) Targeting the rDNA Internal Transcribed Spacer (ITS) Regions for Accurate Identification of Clinically Important Yeast Species
inferred← citeshttps://doi.org/10.1371/journal.pone.0157847openalex-snapshot
The Microbiome and Metabolites in Fermented Pu-erh Tea as Revealed by High-Throughput Sequencing and Quantitative Multiplex Metabolite Analysis
inferred← citeshttps://doi.org/10.1371/journal.pone.0194489openalex-snapshot
DNA metabarcoding uncovers fungal diversity of mixed airborne samples in Italy
inferred← citeshttps://doi.org/10.1371/journal.pone.0196440openalex-snapshot
The ecology of the Drosophila-yeast mutualism in wineries
inferred← citeshttps://doi.org/10.1371/journal.pone.0325605openalex-snapshot
Clonal integration and Bacillus subtilis modulate Glechoma longituba performance and soil microbial communities
inferred← citeshttps://doi.org/10.1515/biol-2025-1103openalex-snapshot
Fungal and bacterial pathogenic co-infections mainly lead to the assembly of microbial community in tobacco stems
inferred← citeshttps://doi.org/10.17760/d20383671openalex-snapshot
Characterization of the germline mtDNA bottleneck using third generation sequencing and computational modeling
inferred← citeshttps://doi.org/10.21203/rs.3.rs-10501616/v1openalex-snapshot
Nutrient Regime Restructures Root Fungal Communities in Hydroponic and Aquaponic Systems
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2157078/v1openalex-snapshot
Saline soil reclamation by halophytes increased soil multifunctionality through modulation of soil microbial communities
inferred← citeshttps://doi.org/10.21203/rs.3.rs-237640/v1openalex-snapshot
Topological and Metagenomic Evidence For Intensified Bacterial-Fungal Interactions in Mangrove Root Interior
inferred← citeshttps://doi.org/10.2217/fmb-2017-0241openalex-snapshot
Identification of Candida Glabrata Complex Species: use of Vitek MS ® RUO & Bruker Clinprotools ®
inferred← citeshttps://doi.org/10.3233/jifs-179138openalex-snapshot
RETRACTED: Application and research of automatic password update technology based on the development of wireless network
inferred← citeshttps://doi.org/10.32942/x2b615openalex-snapshot
Divergent responses between lineages of arbuscular mycorrhizal fungi to soil phosphorus and nitrogen availability
inferred← citeshttps://doi.org/10.33265/polar.v40.7727openalex-snapshot
Liverworts frequently form mycothalli on Spitsbergen in the High Arctic
inferred← citeshttps://doi.org/10.3389/fcimb.2021.781246openalex-snapshot
Comparative Analysis of Salivary Mycobiome Diversity in Human Immunodeficiency Virus-Infected Patients
inferred← citeshttps://doi.org/10.3389/fcimb.2026.1771517openalex-snapshot
Two decades of mucormycosis: molecular epidemiology and antifungal susceptibility trends in Türkiye
inferred← citeshttps://doi.org/10.3389/ffunb.2023.1064939openalex-snapshot
Incidents of snake fungal disease caused by the fungal pathogen Ophidiomyces ophidiicola in Texas
inferred← citeshttps://doi.org/10.3389/ffunb.2023.1086194openalex-snapshot
Exploring the mycobiome and arbuscular mycorrhizal fungi associated with the rizosphere of the genus Inga in the pristine Ecuadorian Amazon
inferred← citeshttps://doi.org/10.3389/fimmu.2019.01914openalex-snapshot
Bacterial but Not Fungal Gut Microbiota Alterations Are Associated With Common Variable Immunodeficiency (CVID) Phenotype
inferred← citeshttps://doi.org/10.3389/fmars.2021.738877openalex-snapshot
The Potential Role of Marine Fungi in Plastic Degradation – A Review
inferred← citeshttps://doi.org/10.3389/fmicb.2016.02098openalex-snapshot
A High-Level Fungal Diversity in the Intertidal Sediment of Chinese Seas Presents the Spatial Variation of Community Composition
inferred← citeshttps://doi.org/10.3389/fmicb.2018.00699openalex-snapshot
Tillage Changes Vertical Distribution of Soil Bacterial and Fungal Communities
inferred← citeshttps://doi.org/10.3389/fmicb.2018.01815openalex-snapshot
Fungal Communities Along a Small-Scale Elevational Gradient in an Alpine Tundra Are Determined by Soil Carbon Nitrogen Ratios
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01011openalex-snapshot
Regional and Microenvironmental Scale Characterization of the Zostera muelleri Seagrass Microbiome
inferred← citeshttps://doi.org/10.3389/fmicb.2019.01562openalex-snapshot
Response of Fungal Communities and Co-occurrence Network Patterns to Compost Amendment in Black Soil of Northeast China
inferred← citeshttps://doi.org/10.3389/fmicb.2020.615659openalex-snapshot
Regional Diversity of Maritime Antarctic Soil Fungi and Predicted Responses of Guilds and Growth Forms to Climate Change
inferred← citeshttps://doi.org/10.3389/fmicb.2021.642964openalex-snapshot
Corrigendum: Regional and Microenvironmental Scale Characterization of the Zostera muelleri Seagrass Microbiome
inferred← citeshttps://doi.org/10.3389/fmicb.2021.646302openalex-snapshot
Mycobiomes of Young Beech Trees Are Distinguished by Organ Rather Than by Habitat, and Community Analyses Suggest Competitive Interactions Among Twig Fungi
inferred← citeshttps://doi.org/10.3389/fmicb.2021.698385openalex-snapshot
Genetic Elucidation of Quorum Sensing and Cobamide Biosynthesis in Divergent Bacterial-Fungal Associations Across the Soil-Mangrove Root Interface
inferred← citeshttps://doi.org/10.3389/fmicb.2021.708475openalex-snapshot
Spatiotemporal Assembly of Bacterial and Fungal Communities of Seed-Seedling-Adult in Rice
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