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ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language

https://doi.org/10.12688/f1000research.104368.2
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From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline
inferredcites →https://doi.org/10.1016/0040-5809(72)90035-4openalex-snapshot
The sampling theory of selectively neutral alleles
inferredcites →https://doi.org/10.1016/j.cub.2021.01.053openalex-snapshot
Demographic inference
inferredcites →https://doi.org/10.1038/nrg2986openalex-snapshot
Genotype and SNP calling from next-generation sequencing data
inferredcites →https://doi.org/10.1038/nrg3803openalex-snapshot
Sequencing pools of individuals — mining genome-wide polymorphism data without big funding
inferredcites →https://doi.org/10.1038/s41426-018-0045-xopenalex-snapshot
Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris
inferredcites →https://doi.org/10.1038/s41576-020-0236-xopenalex-snapshot
Long-read human genome sequencing and its applications
inferredcites →https://doi.org/10.1038/s41588-018-0165-1openalex-snapshot
Genome doubling shapes the evolution and prognosis of advanced cancers
inferredcites →https://doi.org/10.1038/s43586-021-00056-9openalex-snapshot
Genome-wide association studies
inferredcites →https://doi.org/10.1080/14787210.2017.1364992openalex-snapshot
Candida auris : a worrisome, globally emerging pathogen
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr509openalex-snapshot
A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
inferredcites →https://doi.org/10.1093/bioinformatics/btu041openalex-snapshot
ngsTools: methods for population genetics analyses from next-generation sequencing data
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1101/gr.129684.111openalex-snapshot
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
inferredcites →https://doi.org/10.1111/mec.16077openalex-snapshot
A beginner's guide to low‐coverage whole genome sequencing for population genomics
inferredcites →https://doi.org/10.1137/141000671openalex-snapshot
Julia: A Fresh Approach to Numerical Computing
inferredcites →https://doi.org/10.1146/annurev-genet-111212-133526openalex-snapshot
Detecting Natural Selection in Genomic Data
inferredcites →https://doi.org/10.1146/annurev-genom-083115-022413openalex-snapshot
Advancements in Next-Generation Sequencing
inferredcites →https://doi.org/10.1186/1471-2105-12-231openalex-snapshot
Estimation of allele frequency and association mapping using next-generation sequencing data
inferredcites →https://doi.org/10.1186/1471-2105-13-239openalex-snapshot
SNP calling by sequencing pooled samples
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s13059-019-1639-xopenalex-snapshot
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing
inferredcites →https://doi.org/10.12688/f1000research.104368.2openalex-snapshot
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language
inferredcites →https://doi.org/10.1371/journal.pone.0037558openalex-snapshot
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pone.0079667openalex-snapshot
Assessing the Effect of Sequencing Depth and Sample Size in Population Genetics Inferences
inferredcites →https://doi.org/10.1371/journal.pone.0140462openalex-snapshot
Validation of Pooled Whole-Genome Re-Sequencing in Arabidopsis lyrata
inferredcites →https://doi.org/10.1534/genetics.113.154740openalex-snapshot
Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data
inferredcites →https://doi.org/10.24072/pcjournal.178openalex-snapshot
HMMploidy: inference of ploidy levels from short-read sequencing data
inferredcites →https://doi.org/10.3389/fgene.2012.00066openalex-snapshot
Assessing the Accuracy and Power of Population Genetic Inference from Low-Pass Next-Generation Sequencing Data
inferredcites →https://doi.org/10.48550/arxiv.1207.3907openalex-snapshot
Haplotype-based variant detection from short-read sequencing
inferredcites →https://doi.org/10.5281/zenodo.5886878openalex-snapshot
ngsJulia: population genetic analysis of next-generation DNA sequencing data with Julia language
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