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ranacapa: An R package and Shiny web app to explore environmental DNA data with exploratory statistics and interactive visualizations
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1017/cbo9781316105412.035openalex-snapshot
Quantifying reef fishes: bias in observational approaches
inferredcites →https://doi.org/10.1038/ismej.2012.8openalex-snapshot
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
inferredcites →https://doi.org/10.1038/nbt.2676openalex-snapshot
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
inferredcites →https://doi.org/10.1038/nmeth.f.303openalex-snapshot
QIIME allows analysis of high-throughput community sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu494openalex-snapshot
STAMP: statistical analysis of taxonomic and functional profiles
inferredcites →https://doi.org/10.1093/bioinformatics/btu616openalex-snapshot
Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
inferredcites →https://doi.org/10.1093/bioinformatics/btx657openalex-snapshot
heatmaply: an R package for creating interactive cluster heatmaps for online publishing
inferredcites →https://doi.org/10.1098/rsos.150088openalex-snapshot
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
inferredcites →https://doi.org/10.1098/rstb.2013.0383openalex-snapshot
Ancient and modern environmental DNA
inferredcites →https://doi.org/10.1101/009944openalex-snapshot
Phinch: An interactive, exploratory data visualization framework for –Omic datasets
inferredcites →https://doi.org/10.1111/2041-210x.12994openalex-snapshot
eDNA Sampler: A fully integrated environmental DNA sampling system
inferredcites →https://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferredcites →https://doi.org/10.1111/mec.14395openalex-snapshot
Environmental DNA detection of rare and invasive fish species in two Great Lakes tributaries
inferredcites →https://doi.org/10.1128/jmbe.v16i2.1045openalex-snapshot
Comparing the Impact of Course-Based and Apprentice-Based Research Experiences in a Life Science Laboratory Curriculum
inferredcites →https://doi.org/10.1186/1742-9994-10-34openalex-snapshot
A new versatile primer set targeting a short fragment of the mitochondrial COI region for metabarcoding metazoan diversity: application for characterizing coral reef fish gut contents
inferredcites →https://doi.org/10.12688/f1000research.14013.1openalex-snapshot
Taxa: An R package implementing data standards and methods for taxonomic data
inferredcites →https://doi.org/10.12688/f1000research.2-191.v1openalex-snapshot
taxize: taxonomic search and retrieval in R
inferredcites →https://doi.org/10.12688/f1000research.2-191.v2openalex-snapshot
taxize: taxonomic search and retrieval in R.
inferredcites →https://doi.org/10.1371/journal.pcbi.1003531openalex-snapshot
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
inferredcites →https://doi.org/10.1371/journal.pcbi.1005871openalex-snapshot
Ten simple rules for biologists learning to program
inferredcites →https://doi.org/10.1371/journal.pone.0061217openalex-snapshot
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
inferredcites →https://doi.org/10.1371/journal.pone.0067818openalex-snapshot
Application of the ITS2 Region for Barcoding Medicinal Plants of Selaginellaceae in Pteridophyta
inferredcites →https://doi.org/10.1890/120007openalex-snapshot
A framework for engaging diverse communities in citizen science in the US
inferredcites →https://doi.org/10.32614/cran.package.rinatopenalex-snapshot
rinat: Access 'iNaturalist' Data Through APIs
inferredcites →https://doi.org/10.32614/cran.package.shinyopenalex-snapshot
shiny: Web Application Framework for R
inferredcites →https://doi.org/10.32614/cran.package.veganopenalex-snapshot
vegan: Community Ecology Package
inferredcites →https://doi.org/10.6084/m9.figshare.7199477openalex-snapshot
Taxon table and metadata file for Channel Islands eDNA samples (mitochondrial 12S and CO1 metabarcodes sequenced)
inferredcites →https://doi.org/10.6084/m9.figshare.7199510openalex-snapshot
Taxon table and metadata file for Santa Monica Mountains eDNA samples (16S and plant-ITS metabarcodes sequenced)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1002/edn3.445openalex-snapshot
Environmental DNA reveals invasive crayfish microbial associates and ecosystem‐wide biodiversity before and after eradication
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Microbial diversity of sub-bottom sediment cores from a tropical reef system
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Ubiquitous arbuscular mycorrhizal fungi in the roots of herbaceous understory plants with hyphal degeneration in Colchicaceae and Gentianaceae
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Species composition of root-associated mycobiome of ruderal invasive Anthemis cotula L. varies with elevation in Kashmir Himalaya
inferred← citeshttps://doi.org/10.1007/s10530-024-03406-2openalex-snapshot
Research horizons for invasive marine species detection with eDNA/eRNA
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Preservation methods of honey bee-collected pollen are not a source of bias in ITS2 metabarcoding
inferred← citeshttps://doi.org/10.1007/s10750-021-04576-zopenalex-snapshot
Metabarcoding meiofauna biodiversity assessment in four beaches of Northern Colombia: effects of sampling protocols and primer choice
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Exploration of bacterial diversity in leaves and rhizosphere soil of flood affected and unaffected apricot trees
inferred← citeshttps://doi.org/10.1007/s12562-020-01461-xopenalex-snapshot
MiFish metabarcoding: a high-throughput approach for simultaneous detection of multiple fish species from environmental DNA and other samples
inferred← citeshttps://doi.org/10.1007/s13199-025-01032-7openalex-snapshot
Exploration of bacterial composition and diversity within the apricot seed wasp Eurytoma samsonowi (Hymenoptera: Eurytomidae) by 16S rRNA Illumina sequencing
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Bioinoculants and organic soil amendments affect nematode diversity in apple orchards
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Liquid Kunapajala improves plant growth, selected soil properties, and modulates the rhizosphere bacteriome in Piper nigrum L
inferred← citeshttps://doi.org/10.1016/j.apsoil.2025.106393openalex-snapshot
Changing communities of ammonia-oxidizing Betaproteobacteria and Thaumarchaea at discrete vegetation zones along a hill slope grassland gradient
inferred← citeshttps://doi.org/10.1016/j.apsoil.2026.106878openalex-snapshot
Non-linear effects of Fontelis 20 SC (fungicide) on gut microbiota relate to changes in reproduction of Folsomia candida (Collembola)
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738699openalex-snapshot
Prebiotics Modify Host Metabolism in Rainbow Trout (Oncorhynchus Mykiss) Fed with a Total Plant-Based Diet: Potential Implications for Microbiome-Mediated Diet Optimization
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2024.740624openalex-snapshot
Probiotic treatment modulates the bacterial microbiome of larval eastern oysters, Crassostrea virginica, in hatcheries
inferred← citeshttps://doi.org/10.1016/j.clnu.2024.09.004openalex-snapshot
Randomised control trial indicates micronutrient supplementation may support a more robust maternal microbiome for women with antenatal depression during pregnancy
inferred← citeshttps://doi.org/10.1016/j.crmicr.2025.100475openalex-snapshot
Niche-specific microbial diversity, interactions, and functional potential within the spinach microbiome
inferred← citeshttps://doi.org/10.1016/j.crmicr.2025.100536openalex-snapshot
Post-harvest microbiome dynamics and their impact on the safety and quality of Lupinus mutabilis sweet (Chocho)
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.12.019openalex-snapshot
The mosquito microbiome includes habitat-specific but rare symbionts
inferred← citeshttps://doi.org/10.1016/j.ejsobi.2023.103531openalex-snapshot
Microniches harbor distinct bacterial communities at the soil-plant-earthworm interface
inferred← citeshttps://doi.org/10.1016/j.envadv.2024.100534openalex-snapshot
Exploring fish communities in the mud volcano polluted river using environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2023.105313openalex-snapshot
How does particulate matter affect plant transcriptome and microbiome?
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Assessing the presence, concentration, and impacts of trace element contamination in a Chesapeake Bay tributary adjacent to a coal ash landfill (Possum Point, VA)
inferred← citeshttps://doi.org/10.1016/j.fm.2023.104357openalex-snapshot
Addition of Saccharomyces eubayanus to SCOBY fermentations modulates the chemical and volatile compound profiles in kombucha
inferred← citeshttps://doi.org/10.1016/j.fooweb.2024.e00373openalex-snapshot
Prey availability and diet composition of the Grey plover (Pluvialis squatarola) during migration on the South-Western Black Sea coast, Bulgaria
inferred← citeshttps://doi.org/10.1016/j.fsigen.2021.102463openalex-snapshot
STRait Razor Online: An enhanced user interface to facilitate interpretation of MPS data
inferred← citeshttps://doi.org/10.1016/j.genrep.2022.101690openalex-snapshot
Cross-biome metagenomic analyses of the impact of pollutants on taxonomic and functional diversity of bacterial communities from different geographical regions
inferred← citeshttps://doi.org/10.1016/j.isci.2022.104550openalex-snapshot
Shifts in Pseudomonas species diversity influence adaptation of brown planthopper to changing climates and geographical locations
inferred← citeshttps://doi.org/10.1016/j.jembe.2024.152004openalex-snapshot
Thermal fluctuations independently modulate physiological plasticity and the dynamics of the gut microbiome in a tropical rocky shore oyster
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2023.115226openalex-snapshot
Effects of marine diesel on microbial diversity and activity in high Arctic beach sediments
inferred← citeshttps://doi.org/10.1016/j.meegid.2023.105474openalex-snapshot
Bacterial dysbiosis and epithelial status of the California sea lion (Zalophus californianus) in the Gulf of California
inferred← citeshttps://doi.org/10.1016/j.mex.2024.102699openalex-snapshot
Mix-method toolbox for monitoring greenhouse gas production and microbiome responses to soil amendments
inferred← citeshttps://doi.org/10.1016/j.micpath.2024.106662openalex-snapshot
Carrier state of enterotoxigenic Escherichia coli virulence markers in pigs: Effects on gut microbiota modulation and immune markers transcription
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Future directions for One Health research: Regional and sectoral gaps
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.139173openalex-snapshot
Dynamics and resilience of soil mycobiome under multiple organic and inorganic pulse disturbances
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2025.178872openalex-snapshot
The relevance of biochar and co-applied SynComs on maize quality and sustainability: Evidence from field experiments
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Assessing microbial community changes in organic cropping under leguminous and non-leguminous ground covers compared to plastic mulch
inferred← citeshttps://doi.org/10.1016/j.xpro.2022.101941openalex-snapshot
Pseudomonas-specific 16S rRNA insect gut-microbiome profiling using next-generation sequencing
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Composition and diversity of bacterial communities associated with honey bee foragers from two contrasting environments
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Culture-Independent Analysis of Linuron-Mineralizing Microbiota and Functions in on-Farm Biopurification Systems via DNA-Stable Isotope Probing: Comparison with Enrichment Culture
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Dispersal, Establishment, and Functional Shifts of Runoff-Derived Bacterial Taxa Shaping Microbial Diversity in Infiltration-Based Aquifer Recharge Systems
inferred← citeshttps://doi.org/10.1038/s41467-023-39876-6openalex-snapshot
Systematic review of cnidarian microbiomes reveals insights into the structure, specificity, and fidelity of marine associations
inferred← citeshttps://doi.org/10.1038/s41598-020-69828-9openalex-snapshot
Shifts in the microbiota associated with male mosquitoes (Aedes aegypti) exposed to an obligate gut fungal symbiont (Zancudomyces culisetae)
inferred← citeshttps://doi.org/10.1038/s41598-023-45182-4openalex-snapshot
Microbial community dynamics and cycling of plutonium and iron in a seasonally stratified and radiologically contaminated pond
inferred← citeshttps://doi.org/10.1038/s41598-024-53147-4openalex-snapshot
Impact of artisanal refining activities on bacterial diversity in a Niger Delta fallow land
inferred← citeshttps://doi.org/10.1038/s41598-024-56993-4openalex-snapshot
A comparison of two gene regions for assessing community composition of eukaryotic marine microalgae from coastal ecosystems
inferred← citeshttps://doi.org/10.1038/s41598-024-68209-wopenalex-snapshot
Unraveling the spatio-temporal dynamics of soil and root-associated microbiomes in Texas olive orchards
inferred← citeshttps://doi.org/10.1080/08927014.2023.2226069openalex-snapshot
A spatio-temporal analysis of marine diatom communities associated with pristine and aged plastics
inferred← citeshttps://doi.org/10.1080/08927014.2026.2675243openalex-snapshot
Biofouling on aquaculture mesh: disentangling seasonal and environmental effects with DNA metabarcoding
inferred← citeshttps://doi.org/10.1093/etojnl/vgae073openalex-snapshot
Identifying potential trace metal contamination impacts of a coal ash landfill on the largest Chesapeake Bay tributary (Chester, VA, USA)
inferred← citeshttps://doi.org/10.1093/femsec/fiaa244openalex-snapshot
Utilization of low-molecular-weight organic compounds by the filterable fraction of a lotic microbiome
inferred← citeshttps://doi.org/10.1093/femsec/fiae064openalex-snapshot
Nitrogen-fixing bacterial communities differ between perennial agroecosystem crops
inferred← citeshttps://doi.org/10.1093/femsec/fiaf058openalex-snapshot
The impact of pooling on the observed microbiome profile of preweaned piglet feces
inferred← citeshttps://doi.org/10.1093/ismeco/ycae014openalex-snapshot
Role of Syndiniales parasites in depth-specific networks and carbon flux in the oligotrophic ocean
inferred← citeshttps://doi.org/10.1093/jhered/esag001openalex-snapshot
Bycatch in a bottle: what taxa are recoverable from metabarcoding DNA in historical invertebrate collection preservative fluid?
inferred← citeshttps://doi.org/10.1094/phytofr-02-23-0012-ropenalex-snapshot
Grapevine Leaf Epiphytic Fungal and Bacterial Communities Are Influenced More by Spatial and Temporal Factors than by Powdery Mildew Fungicide Spray Programs
inferred← citeshttps://doi.org/10.1099/acmi.0.001140.v3openalex-snapshot
Ephemeral signatures of phylosymbiosis in dermal microbiomes within the requiem shark family (Carcharhinidae)
inferred← citeshttps://doi.org/10.1101/2020.03.19.999078openalex-snapshot
Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1101/2020.12.29.424660openalex-snapshot
Investigating temporal and spatial variation of eDNA in a nearshore rocky reef environment
inferred← citeshttps://doi.org/10.1101/2024.06.11.598432openalex-snapshot
Vertical transmission of fungus-growing ant microbiota is species-specific and constrained by queens
inferred← citeshttps://doi.org/10.1101/2024.07.30.605667openalex-snapshot
Assessing the effects of warming and carbonate chemistry parameters on marine microbes in the Gulf of Mexico through basin-scale DNA metabarcoding
inferred← citeshttps://doi.org/10.1101/2025.11.20.689612openalex-snapshot
Biofouling on aquaculture mesh: disentangling seasonal and environmental effects with eDNA
inferred← citeshttps://doi.org/10.1101/482380openalex-snapshot
PUMA: A tool for processing 16S rRNA taxonomy data for analysis and visualization
inferred← citeshttps://doi.org/10.1101/503383openalex-snapshot
The California environmental DNA “CALeDNA” program
inferred← citeshttps://doi.org/10.1101/680272openalex-snapshot
Beach environmental DNA fills gaps in photographic biomonitoring to track spatiotemporal community turnover across 82 phyla
inferred← citeshttps://doi.org/10.1111/1462-2920.14882openalex-snapshot
Structure and ecological function of the soil microbiome affecting plant–soil feedbacks in the presence of a soil‐borne pathogen
inferred← citeshttps://doi.org/10.1111/1462-2920.15730openalex-snapshot
Microbes to‐go: slugs as source for Caenorhabditis elegans microbiota acquisition
inferred← citeshttps://doi.org/10.1111/1462-2920.16656openalex-snapshot
Macroalgal eukaryotic microbiome composition indicates novel phylogenetic diversity and broad host spectrum of oomycete pathogens
inferred← citeshttps://doi.org/10.1111/1462-2920.70027openalex-snapshot
Mosquitoes Reared in Nearby Insectaries at the Same Institution Have Significantly Divergent Microbiomes
inferred← citeshttps://doi.org/10.1111/1462-2920.70420openalex-snapshot
Prokaryotic Novelty and Metabolic Diversity in the Tagoro Shallow Hydrothermal System (Canary Islands, Spain)
inferred← citeshttps://doi.org/10.1111/1758-2229.70065openalex-snapshot
Biogeographical Distribution of River Microbial Communities in Atlantic Catchments
inferred← citeshttps://doi.org/10.1111/2041-210x.13214openalex-snapshot
Anacapa Toolkit : An environmental DNA toolkit for processing multilocus metabarcode datasets
inferred← citeshttps://doi.org/10.1111/geb.13643openalex-snapshot
Climate mediates roles of pollinator species in plant–pollinator networks
inferred← citeshttps://doi.org/10.1111/mec.16663openalex-snapshot
Isolated Grauer's gorilla populations differ in diet and gut microbiome
inferred← citeshttps://doi.org/10.1111/mec.70136openalex-snapshot
Tropics to the Poles: A Snapshot of Coastal Eukaryotic Marine Microalgal Diversity Across Five Ecoregions
inferred← citeshttps://doi.org/10.1128/aem.00942-22openalex-snapshot
Leaf Mycobiome and Mycotoxin Profile of Warm-Season Grasses Structured by Plant Species, Geography, and Apparent Black-Stroma Fungal Structure
inferred← citeshttps://doi.org/10.1128/aem.01889-25openalex-snapshot
Microbial community dynamics over large spatial and environmental gradients in a subtropical ocean basin
inferred← citeshttps://doi.org/10.1128/aem.02334-19openalex-snapshot
Influences of a Prolific Gut Fungus (Zancudomyces culisetae) on Larval and Adult Mosquito (Aedes aegypti)-Associated Microbiota
inferred← citeshttps://doi.org/10.1128/mra.01195-19openalex-snapshot
GenePiper, a Graphical User Interface Tool for Microbiome Sequence Data Mining
inferred← citeshttps://doi.org/10.1128/msystems.01269-25openalex-snapshot
Contrasting glucosinolate profiles in rapeseed genotypes shape the rhizosphere-insect continuum and microbial detoxification potential in a root herbivore
inferred← citeshttps://doi.org/10.1128/spectrum.01404-23openalex-snapshot
Multiomics Reveals Symbionts, Pathogens, and Tissue-Specific Microbiome of Blacklegged Ticks (Ixodes scapularis) from a Lyme Disease Hot Spot in Southeastern Ontario, Canada
inferred← citeshttps://doi.org/10.1128/spectrum.02506-22openalex-snapshot
Short-Term Tomato Consumption Alters the Pig Gut Microbiome toward a More Favorable Profile
inferred← citeshttps://doi.org/10.1186/s12866-020-02041-wopenalex-snapshot
The Epidome - a species-specific approach to assess the population structure and heterogeneity of Staphylococcus epidermidis colonization and infection
inferred← citeshttps://doi.org/10.1186/s12866-021-02168-4openalex-snapshot
Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.1186/s12866-025-04149-3openalex-snapshot
The evaluation of shotgun sequencing and rpoB metabarcoding for taxonomic profiling of bacterial communities
inferred← citeshttps://doi.org/10.1186/s12866-025-04278-9openalex-snapshot
Exploring the influence of urbanization on gut mycobiota through dietary habits in Burkina Faso
inferred← citeshttps://doi.org/10.1186/s12866-025-04454-xopenalex-snapshot
Microbiome of wild oysters: assessing diversity and detecting potential pathogens using a metabarcoding approach
inferred← citeshttps://doi.org/10.1186/s13765-024-00915-5openalex-snapshot
A comprehensive database of human and livestock fecal microbiome for community-wide microbial source tracking: a case study in South Korea
inferred← citeshttps://doi.org/10.1186/s40168-023-01522-0openalex-snapshot
In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model
inferred← citeshttps://doi.org/10.1186/s40168-026-02477-8openalex-snapshot
Vertical transmission of mosquito microbiota and its effects on offspring development
inferred← citeshttps://doi.org/10.1186/s40793-022-00415-3openalex-snapshot
Insights into the microbiome assembly during different growth stages and storage of strawberry plants
inferred← citeshttps://doi.org/10.1186/s40793-023-00515-8openalex-snapshot
Reciprocal influence of soil, phyllosphere, and aphid microbiomes
inferred← citeshttps://doi.org/10.1186/s40793-025-00715-4openalex-snapshot
Plant microbiome responses to bioinoculants and volatiles
inferred← citeshttps://doi.org/10.1186/s42523-024-00300-zopenalex-snapshot
Enhancing seafood traceability: tracking the origin of seabass and seabream from the tuscan coast area by the analysis of the gill bacterial communities
inferred← citeshttps://doi.org/10.1186/s42523-024-00345-0openalex-snapshot
Unravelling the complexity of bovine milk microbiome: insights into mastitis through enterotyping using full-length 16S-metabarcoding
inferred← citeshttps://doi.org/10.1289/ehp11257openalex-snapshot
Accumulation of Black Carbon Particles in Placenta, Cord Blood, and Childhood Urine in Association with the Intestinal Microbiome Diversity and Composition in Four- to Six-Year-Old Children in the ENVIR ON AGE Birth Cohort
inferred← citeshttps://doi.org/10.13140/rg.2.1.2645.4484openalex-snapshot
Connecting Pixels to People: Management Agents and Social-ecological Determinants of Changes to Street Tree Distributions
inferred← citeshttps://doi.org/10.1371/journal.pgph.0003672openalex-snapshot
Assessment of airborne bacteria from a public health institution in Mexico City
inferred← citeshttps://doi.org/10.1371/journal.pgph.0004784openalex-snapshot
Genetic sequencing of the airborne fungal spectrum and air quality at a public hospital in Mexico City
inferred← citeshttps://doi.org/10.1371/journal.pone.0245314openalex-snapshot
Short-lived detection of an introduced vertebrate eDNA signal in a nearshore rocky reef environment
inferred← citeshttps://doi.org/10.1371/journal.pone.0250783openalex-snapshot
Investigating variability in microbial community composition in replicate environmental DNA samples down lake sediment cores
inferred← citeshttps://doi.org/10.1371/journal.pone.0306011openalex-snapshot
Bacterial communities of fungus-growing ant queens are species-specific and suggest vertical transmission
inferred← citeshttps://doi.org/10.1371/journal.pone.0313263openalex-snapshot
Gut bacterial communities in roadkill animals: A pioneering study of two species in the Amazon region in Ecuador
inferred← citeshttps://doi.org/10.1534/g3.119.400770openalex-snapshot
Experimental DNA Demethylation Associates with Changes in Growth and Gene Expression of Oak Tree Seedlings
inferred← citeshttps://doi.org/10.17660/actahortic.2026.1450.30openalex-snapshot
Dynamics of microbial communities in apricot rhizosphere related to the identified phylogeographic groups
inferred← citeshttps://doi.org/10.18122/td/1522/boisestateopenalex-snapshot
The Endosymbiotic Gut Fungus Zancudomyces Culisetae Influences Transstadial Transmission of Host-Associated Microbiota in the Yellow Fever Mosquito (Aedes Aegypti)
inferred← citeshttps://doi.org/10.21105/joss.06704openalex-snapshot
Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data.
inferred← citeshttps://doi.org/10.21203/rs.3.rs-7144747/v1openalex-snapshot
Long-term freshwater time series reveals recurrent and episodic microbial dynamics driven by distinct assembly mechanisms
inferred← citeshttps://doi.org/10.21203/rs.3.rs-8004386/v1openalex-snapshot
Leaf Microbiome Differences Between Winter (Invasive) and Summer (Non-invasive) Annual Growth forms of Anthemis cotula L.: Insights into Invasiveness
inferred← citeshttps://doi.org/10.21203/rs.3.rs-889564/v1openalex-snapshot
Halophytes Increase Rhizosphere Microbial Diversity And Network Complexity In Inland Saline Ecosystem
inferred← citeshttps://doi.org/10.24918/cs.2022.35openalex-snapshot
Analysis of Microbiomes Using Free Web-Based Tools in Online and In-Person Undergraduate Science Courses
inferred← citeshttps://doi.org/10.32614/rj-2021-004openalex-snapshot
Six Years of Shiny in Research - Collaborative Development of Web Tools in R
inferred← citeshttps://doi.org/10.3389/ffgc.2022.738568openalex-snapshot
Soil Bacterial Community Along an Altitudinal Gradient in the Sumaco, a Stratovolcano in the Amazon Region
inferred← citeshttps://doi.org/10.3389/fmars.2022.891183openalex-snapshot
Eco-Plastics in the Sea: Succession of Micro- and Macro-Fouling on a Biodegradable Polymer Augmented With Oyster Shell
inferred← citeshttps://doi.org/10.3389/fmars.2026.1759595openalex-snapshot
Diversity and connectivity of bacterial communities in polymetallic nodule-rich abyssal plains (Eastern Tropical Pacific)
inferred← citeshttps://doi.org/10.3389/fmicb.2019.02320openalex-snapshot
Saccharomyces cerevisiae Induces Immune Enhancing and Shapes Gut Microbiota in Social Wasps
inferred← citeshttps://doi.org/10.3389/fmicb.2020.536932openalex-snapshot
Hatching of Globodera pallida Induced by Root Exudates Is Not Influenced by Soil Microbiota Composition
inferred← citeshttps://doi.org/10.3389/fmicb.2020.577621openalex-snapshot
The Bean Beetle Microbiome Project: A Course-Based Undergraduate Research Experience in Microbiology
inferred← citeshttps://doi.org/10.3389/fmicb.2020.584699openalex-snapshot
PUMAA: A Platform for Accessible Microbiome Analysis in the Undergraduate Classroom
inferred← citeshttps://doi.org/10.3389/fmicb.2020.610269openalex-snapshot
Zebra Mussel Holobionts Fix and Recycle Nitrogen in Lagoon Sediments
inferred← citeshttps://doi.org/10.3389/fmicb.2021.644828openalex-snapshot
The Cheese Production Facility Microbiome Exhibits Temporal and Spatial Variability
inferred← citeshttps://doi.org/10.3389/fmicb.2021.673128openalex-snapshot
Cross-Sectional Variations in Structure and Function of Coral Reef Microbiome With Local Anthropogenic Impacts on the Kenyan Coast of the Indian Ocean
inferred← citeshttps://doi.org/10.3389/fmicb.2021.757929openalex-snapshot
Metabarcoding Reveals Lacustrine Picocyanobacteria Respond to Environmental Change Through Adaptive Community Structuring
inferred← citeshttps://doi.org/10.3389/fmicb.2022.1030771openalex-snapshot
Experimental inheritance of antibiotic acquired dysbiosis affects host phenotypes across generations
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1052031openalex-snapshot
Bark-inhabiting fungal communities of European chestnut undergo substantial alteration by canker formation following chestnut blight infection
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1067906openalex-snapshot
Habitat and tree species identity shape aboveground and belowground fungal communities in central European forests
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1114548openalex-snapshot
Influence of soil nutrients on the presence and distribution of CPR bacteria in a long-term crop rotation experiment
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1154815openalex-snapshot
The microbiome of the ice-capped Cayambe Volcanic Complex in Ecuador
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1242267openalex-snapshot
Organic vs. conventional: impact of cultivation treatments on the soil microbiota in the vineyard
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1348316openalex-snapshot
Bacterial community changes in strawberry fruits (Fragaria × ananassa variety “Monterey”) from farm field to retail market stands, an indicator of postharvest contamination
inferred← citeshttps://doi.org/10.3389/fmicb.2025.1570312openalex-snapshot
Crosslinking bacterial postbiotics for microbial and quality control of strawberries postharvest: bacteriological and 16S amplicon metagenome evidence
inferred← citeshttps://doi.org/10.3389/fmicb.2026.1810398openalex-snapshot
Microbial community composition and diversity in nodules and rhizosphere soil of bitter white lupine (Lupinus albus L.) and rhizosphere soil of triticale (×Triticosecale Wittmack)
inferred← citeshttps://doi.org/10.3389/fphys.2023.1265879openalex-snapshot
Differential responses of selectively bred mussels (Perna canaliculus) to heat stress—survival, immunology, gene expression and microbiome diversity
inferred← citeshttps://doi.org/10.3389/fpls.2024.1410314openalex-snapshot
Bacterial community structure of Physalis peruviana L. fruit exocarp and the presence of pathogens with possible implications on food safety
inferred← citeshttps://doi.org/10.3389/frmbi.2025.1672438openalex-snapshot
Resistome and microbiome profiling of bovine milk following antimicrobial dry cow therapy: insights from short- and long-read metagenomic sequencing
inferred← citeshttps://doi.org/10.3390/d15070823openalex-snapshot
The Community Structure of eDNA in the Los Angeles River Reveals an Altered Nitrogen Cycle at Impervious Sites
inferred← citeshttps://doi.org/10.3390/d16040247openalex-snapshot
Exploring the Influence of Soil Salinity on Microbiota Dynamics in Vitis vinifera cv. “Glera”: Insights into the Rhizosphere, Carposphere, and Yield Outcomes
inferred← citeshttps://doi.org/10.3390/foods10061425openalex-snapshot
Characterizing Industrial and Artisanal Fishing Vessel Catch Composition Using Environmental DNA and Satellite-Based Tracking Data
inferred← citeshttps://doi.org/10.3390/foods13081175openalex-snapshot
Fungal Mycobiome of Mature Strawberry Fruits (Fragaria x ananassa Variety ‘Monterey’) Suggests a Potential Market Site Contamination with Harmful Yeasts
inferred← citeshttps://doi.org/10.3390/foods13203248openalex-snapshot
Deciphering the Cape Gooseberry Fruits Mycobiome for Further Safety Improvement Postharvest
inferred← citeshttps://doi.org/10.3390/ijms23073616openalex-snapshot
Differential Response of Wheat Rhizosphere Bacterial Community to Plant Variety and Fertilization
inferred← citeshttps://doi.org/10.3390/ijms27167357openalex-snapshot
Microbiome–Epigenome Interplay Impacts Microbial Symbiosis and Stress Adaptations in the Brown Planthopper (Nilaparvata lugens)
inferred← citeshttps://doi.org/10.3390/jmse13091605openalex-snapshot
Assessing the Effectiveness of 3D-Printed Ceramic Structures for Coral Restoration: Growth, Survivorship, and Biodiversity Using Visual Surveys and eDNA
inferred← citeshttps://doi.org/10.3390/jmse14151435openalex-snapshot
Omic and Biochemical Profiling of European Anchovy (Engraulis encrasicolus) Fillets Under Sub-Chilled Storage
inferred← citeshttps://doi.org/10.3390/jof8020145openalex-snapshot
Ectomycorrhizal Fungi Dominated the Root and Rhizosphere Microbial Communities of Two Willow Cultivars Grown for Six-Years in a Mixed-Contaminated Environment
inferred← citeshttps://doi.org/10.3390/microorganisms10061218openalex-snapshot
The Functional Biogeography of eDNA Metacommunities in the Post-Fire Landscape of the Angeles National Forest
inferred← citeshttps://doi.org/10.3390/microorganisms10091743openalex-snapshot
Effect of Site and Phenological Status on the Potato Bacterial Rhizomicrobiota
inferred← citeshttps://doi.org/10.3390/microorganisms12122632openalex-snapshot
Diversity and Composition of the Airborne Fungal Community in Mexico City with a Metagenomic Approach
inferred← citeshttps://doi.org/10.3390/microorganisms8121922openalex-snapshot
Plant Health and Rhizosphere Microbiome: Effects of the Bionematicide Aphanocladium album in Tomato Plants Infested by Meloidogyne javanica
inferred← citeshttps://doi.org/10.3390/microorganisms9102088openalex-snapshot
Ambient Air Pollution Shapes Bacterial and Fungal Ivy Leaf Communities
inferred← citeshttps://doi.org/10.3390/plants11233210openalex-snapshot
Effect of Wastewater on the Composition of Bacterial Microbiota of Phragmites australis Used in Constructed Wetlands for Phytodepuration
inferred← citeshttps://doi.org/10.3390/plants14071033openalex-snapshot
Characterizing Wheat Rhizosphere Bacterial Microbiome Dynamics Under Salinity Stress: Insights from 16S rRNA Metagenomics for Enhancing Stress Tolerance
inferred← citeshttps://doi.org/10.3390/poultry5040056openalex-snapshot
Organic Acids Treatment Attenuates Cecal Microbiota Dysbiosis During Salmonella Minnesota Challenge in Broilers
inferred← citeshttps://doi.org/10.3390/w13233335openalex-snapshot
Antibiotic Resistance Genes and Potentially Pathogenic Bacteria in the Central Adriatic Sea: Are They Connected to Urban Wastewater Inputs?
inferred← citeshttps://doi.org/10.3733/ca.2021a0001openalex-snapshot
The CALeDNA program: Citizen scientists and researchers inventory California's biodiversity
inferred← citeshttps://doi.org/10.37590/able.v42.art31openalex-snapshot
BeanBeetleMicrobiome app: an online app for community analysis of microbiome data
inferred← citeshttps://doi.org/10.3762/bjoc.16.248openalex-snapshot
Secondary metabolites of Bacillus subtilis impact the assembly of soil-derived semisynthetic bacterial communities
inferred← citeshttps://doi.org/10.3897/bdj.9.e72514openalex-snapshot
Metagenomic analysis of Raphidiopsis raciborskii microbiome: beyond the individual
inferred← citeshttps://doi.org/10.47371/mycosci.2025.04.001openalex-snapshot
Community of arbuscular mycorrhizal fungi in a broad-leaved forest in the Fukiage Garden of the Imperial Palace, Tokyo Japan
inferred← citeshttps://doi.org/10.47853/fas.2023.e32openalex-snapshot
Diverse and predominantly sub-adult Epinephelus sp. groupers from small-scale fisheries in South Sulawesi, Indonesia
inferred← citeshttps://doi.org/10.6084/m9.figshare.13294964openalex-snapshot
Additional file 1 of The Epidome - a species-specific approach to assess the population structure and heterogeneity of Staphylococcus epidermidis colonization and infection
inferred← citeshttps://doi.org/10.6084/m9.figshare.13294970openalex-snapshot
Additional file 3 of The Epidome - a species-specific approach to assess the population structure and heterogeneity of Staphylococcus epidermidis colonization and infection
inferred← citeshttps://doi.org/10.6084/m9.figshare.14396883openalex-snapshot
Additional file 1 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.6084/m9.figshare.14396886openalex-snapshot
Additional file 2 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.6084/m9.figshare.14396889openalex-snapshot
Additional file 3 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.6084/m9.figshare.14396892openalex-snapshot
Additional file 4 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.6084/m9.figshare.14396895openalex-snapshot
Additional file 5 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.6084/m9.figshare.14396898openalex-snapshot
Additional file 6 of Meta-analysis suggests the microbiome responds to Evolve and Resequence experiments in Drosophila melanogaster
inferred← citeshttps://doi.org/10.6084/m9.figshare.23001841openalex-snapshot
Additional file 1 of In the right place, at the right time: the integration of bacteria into the Plankton Ecology Group model
inferred← citeshttps://doi.org/10.6084/m9.figshare.23730718openalex-snapshot
Additional file 1 of Reciprocal influence of soil, phyllosphere, and aphid microbiomes
inferred← citeshttps://doi.org/10.64898/2026.02.13.705801openalex-snapshot
Environmental DNA/RNA metabarcoding in estuaries of São Paulo, Brazil, reveals fish diversity and the presence of invasive species
inferred← citeshttps://doi.org/10.64898/2026.06.11.731745openalex-snapshot
First Plant sedaDNA assemblage from California reveals ecological stability throughout 10,000 years of human presence at Lake Elsinore
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.2/reviews/3openalex-snapshot
Peer Review #3 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.3/reviews/2openalex-snapshot
Peer Review #2 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.3)"
inferred← citeshttps://doi.org/10.7287/peerj.14005v0.3/reviews/3openalex-snapshot
Peer Review #3 of "Estuarine microbial networks and relationships vary between environmentally distinct communities (v0.3)"
inferred← citeshttps://doi.org/10.7287/peerj.14549v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Does plastic type matter? Insights into non-indigenous marine larvae recruitment under controlled conditions (v0.1)"
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