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Multispecies biofilm architecture determines bacterial exposure to phages

https://doi.org/10.1371/journal.pbio.3001913
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Collective Memory and Spatial Sorting in Animal Groups
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Bacteriophage-Mediated Biocontrol of Wound Infections, and Ecological Exploitation of Biofilms by Phages
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Molecular detection of E. coli and Vibrio cholerae in ballast water of commercial ships: a primary study along the Persian Gulf
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Vibrio cholerae Combines Individual and Collective Sensing to Trigger Biofilm Dispersal
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Drivers of Spatial Structure in Social Microbial Communities
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Bacterial predation transforms the landscape and community assembly of biofilms
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Local c-di-GMP Signaling in the Control of Synthesis of the E. coli Biofilm Exopolysaccharide pEtN-Cellulose
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Big Impact of the Tiny: Bacteriophage–Bacteria Interactions in Biofilms
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Purely Polysaccharide-Based Biofilm Matrix Provides Size-Selective Diffusion Barriers for Nanoparticles and Bacteriophages
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Adaptation of Escherichia coli Biofilm Growth, Morphology, and Mechanical Properties to Substrate Water Content
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Extracellular matrix structure governs invasion resistance in bacterial biofilms
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Phage mobility is a core determinant of phage–bacteria coexistence in biofilms
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Diet-induced extinctions in the gut microbiota compound over generations
inferredcites →https://doi.org/10.1038/ncomms14341openalex-snapshot
Cell fate decisions emerge as phages cooperate or compete inside their host
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The Vibrio cholerae type VI secretion system employs diverse effector modules for intraspecific competition
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The biogeography of polymicrobial infection
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Spatial structure, cooperation and competition in biofilms
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Biofilms: an emergent form of bacterial life
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Bacterial competition: surviving and thriving in the microbial jungle
inferredcites →https://doi.org/10.1038/nrmicro2415openalex-snapshot
The biofilm matrix
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Living in the matrix: assembly and control of Vibrio cholerae biofilms
inferredcites →https://doi.org/10.1038/s41467-017-00401-1openalex-snapshot
Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion
inferredcites →https://doi.org/10.1038/s41467-020-20241-wopenalex-snapshot
Perineuronal nets stabilize the grid cell network
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Mechanical forces drive a reorientation cascade leading to biofilm self-patterning
inferredcites →https://doi.org/10.1038/s41564-017-0050-1openalex-snapshot
Dynamic biofilm architecture confers individual and collective mechanisms of viral protection
inferredcites →https://doi.org/10.1038/s41564-019-0579-2openalex-snapshot
Breakdown of Vibrio cholerae biofilm architecture induced by antibiotics disrupts community barrier function
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Quantitative image analysis of microbial communities with BiofilmQ
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Emergence of three-dimensional order and structure in growing biofilms
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Spatial structure affects phage efficacy in infecting dual-strain biofilms of Pseudomonas aeruginosa
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Coexistence of phage and bacteria on the boundary of self-organized refuges
inferredcites →https://doi.org/10.1073/pnas.1522149113openalex-snapshot
Biogeography of a human oral microbiome at the micron scale
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Architectural transitions in Vibrio cholerae biofilms at single-cell resolution
inferredcites →https://doi.org/10.1073/pnas.1611494113openalex-snapshot
Vibrio cholerae biofilm growth program and architecture revealed by single-cell live imaging
inferredcites →https://doi.org/10.1073/pnas.1708954115openalex-snapshot
A growing microcolony can survive and support persistent propagation of virulent phages
inferredcites →https://doi.org/10.1073/pnas.1819016116openalex-snapshot
Vibrio cholerae filamentation promotes chitin surface attachment at the expense of competition in biofilms
inferredcites →https://doi.org/10.1073/pnas.2107107118openalex-snapshot
Morphogenesis and cell ordering in confined bacterial biofilms
inferredcites →https://doi.org/10.1073/pnas.2212650120openalex-snapshot
Breakdown of clonal cooperative architecture in multispecies biofilms and the spatial ecology of predation
inferredcites →https://doi.org/10.1073/pnas.94.2.479openalex-snapshot
The thioredoxin binding domain of bacteriophage T7 DNA polymerase confers processivity on Escherichia coli DNA polymerase I
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Mechanisms of antibiotic resistance in bacterial biofilms
inferredcites →https://doi.org/10.1080/0892701021000034418openalex-snapshot
The efficacy of bacteriophage as a method of biofilm eradication
inferredcites →https://doi.org/10.1080/08927010903282814openalex-snapshot
Marine biofilms on submerged surfaces are a reservoir forEscherichia coliandVibrio cholerae
inferredcites →https://doi.org/10.1080/08927014.2010.494251openalex-snapshot
Phage control of dual species biofilms ofPseudomonas fluorescensandStaphylococcus lentus
inferredcites →https://doi.org/10.1080/08927014.2019.1613525openalex-snapshot
Mini-review: efficacy of lytic bacteriophages on multispecies biofilms
inferredcites →https://doi.org/10.1086/285929openalex-snapshot
Host-Parasite Coexistence: The Role of Spatial Refuges in Stabilizing Bacteria-Phage Interactions
inferredcites →https://doi.org/10.1088/1748-9326/7/3/035301openalex-snapshot
Marine snow formation in the aftermath of the Deepwater Horizon oil spill in the Gulf of Mexico
inferredcites →https://doi.org/10.1093/femsre/fuaa062openalex-snapshot
Advances and opportunities in image analysis of bacterial cells and communities
inferredcites →https://doi.org/10.1093/oso/9780195168778.003.0020openalex-snapshot
The T7 Group
inferredcites →https://doi.org/10.1093/oso/9780198508175.001.0001openalex-snapshot
Living in Groups
inferredcites →https://doi.org/10.1093/ve/veac086openalex-snapshot
Phenotypic flux: The role of physiology in explaining the conundrum of bacterial persistence amid phage attack
inferredcites →https://doi.org/10.1111/1462-2920.15844openalex-snapshot
Interactions between Bdellovibrio and like organisms and bacteria in biofilms: beyond predator–prey dynamics
inferredcites →https://doi.org/10.1111/apm.12099openalex-snapshot
The role of bacterial biofilms in chronic infections
inferredcites →https://doi.org/10.1111/j.1574-6976.2008.00150.xopenalex-snapshot
The sociobiology of biofilms
inferredcites →https://doi.org/10.1111/j.1574-6976.2012.00325.xopenalex-snapshot
Multi-species biofilms: living with friendly neighbors
inferredcites →https://doi.org/10.1111/prd.12364openalex-snapshot
Spatial scale in analysis of the dental plaque microbiome
inferredcites →https://doi.org/10.1126/science.1222981openalex-snapshot
Molecular Architecture and Assembly Principles of Vibrio cholerae Biofilms
inferredcites →https://doi.org/10.1126/science.abb8501openalex-snapshot
Cell position fates and collective fountain flow in bacterial biofilms revealed by light-sheet microscopy
inferredcites →https://doi.org/10.1126/science.abi4882openalex-snapshot
Spatial transcriptomics of planktonic and sessile bacterial populations at single-cell resolution
inferredcites →https://doi.org/10.1128/aem.01797-10openalex-snapshot
Bacteriophage Ecology in Escherichia coli and Pseudomonas aeruginosa Mixed-Biofilm Communities
inferredcites →https://doi.org/10.1128/aem.02304-07openalex-snapshot
Fluorescence Correlation Spectroscopy To Study Diffusion and Reaction of Bacteriophages inside Biofilms
inferredcites →https://doi.org/10.1128/aem.02464-14openalex-snapshot
Biofilm Formation Protects Escherichia coli against Killing by Caenorhabditis elegans and Myxococcus xanthus
inferredcites →https://doi.org/10.1128/aem.02821-16openalex-snapshot
The Behavior of Staphylococcus aureus Dual-Species Biofilms Treated with Bacteriophage phiIPLA-RODI Depends on the Accompanying Microorganism
inferredcites →https://doi.org/10.1128/aem.71.5.2325-2330.2005openalex-snapshot
Nested PCR-Denaturing Gradient Gel Electrophoresis Approach To Determine the Diversity of Sulfate-Reducing Bacteria in Complex Microbial Communities
inferredcites →https://doi.org/10.1128/aem.71.7.4044-4051.2005openalex-snapshot
Susceptibility of Biofilms to Bdellovibrio bacteriovorus Attack
inferredcites →https://doi.org/10.1128/aem.71.9.5254-5259.2005openalex-snapshot
Impact of Phages on Two-Species Bacterial Communities
inferredcites →https://doi.org/10.1128/jb.00587-21openalex-snapshot
Biofilm Maintenance as an Active Process: Evidence that Biofilms Work Hard to Stay Put
inferredcites →https://doi.org/10.1128/jb.00946-13openalex-snapshot
Cellulose as an Architectural Element in Spatially Structured Escherichia coli Biofilms
inferredcites →https://doi.org/10.1128/jb.188.3.1049-1059.2006openalex-snapshot
Identification and Characterization of RbmA, a Novel Protein Required for the Development of Rugose Colony Morphology and Biofilm Structure in Vibrio cholerae
inferredcites →https://doi.org/10.1128/mbio.00103-13openalex-snapshot
Microanatomy at Cellular Resolution and Spatial Order of Physiological Differentiation in a Bacterial Biofilm
inferredcites →https://doi.org/10.1128/mbio.00240-17openalex-snapshot
Phage Inhibit Pathogen Dissemination by Targeting Bacterial Migrants in a Chronic Infection Model
inferredcites →https://doi.org/10.1128/microbiolspec.mb-0014-2014openalex-snapshot
The Biology of the Escherichia coli Extracellular Matrix
inferredcites →https://doi.org/10.1128/msystems.00877-19openalex-snapshot
Biofilm Structure Promotes Coexistence of Phage-Resistant and Phage-Susceptible Bacteria
inferredcites →https://doi.org/10.1146/annurev-micro-031921-055801openalex-snapshot
Bacterial Multicellularity: The Biology of Escherichia coli Building Large-Scale Biofilm Communities
inferredcites →https://doi.org/10.1146/annurev-micro-111021-053553openalex-snapshot
Mechanisms Underlying Vibrio cholerae Biofilm Formation and Dispersion
inferredcites →https://doi.org/10.1146/annurev-virology-091919-074222openalex-snapshot
Understanding the Complex Phage-Host Interactions in Biofilm Communities
inferredcites →https://doi.org/10.1146/annurev-virology-091919-075914openalex-snapshot
Understanding the Impacts of Bacteriophage Viruses: From Laboratory Evolution to Natural Ecosystems
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Detection of Escherichia coli, Salmonella species, and Vibrio cholerae in tap water and bottled drinking water in Isfahan, Iran
inferredcites →https://doi.org/10.1186/s13068-017-0798-9openalex-snapshot
Applications of microalgal biofilms for wastewater treatment and bioenergy production
inferredcites →https://doi.org/10.1371/journal.pbio.3001406openalex-snapshot
Individual bacteria in structured environments rely on phenotypic resistance to phage
inferredcites →https://doi.org/10.1371/journal.pntd.0004031openalex-snapshot
Bile Salts Modulate the Mucin-Activated Type VI Secretion System of Pandemic Vibrio cholerae
inferredcites →https://doi.org/10.1371/journal.pone.0086751openalex-snapshot
Structural Characterization of the Extracellular Polysaccharide from Vibrio cholerae O1 El-Tor
inferredcites →https://doi.org/10.1371/journal.ppat.1002815openalex-snapshot
A New Zebrafish Model of Oro-Intestinal Pathogen Colonization Reveals a Key Role for Adhesion in Protection by Probiotic Bacteria
inferredcites →https://doi.org/10.3389/fmicb.2021.647977openalex-snapshot
Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae
inferredcites →https://doi.org/10.3390/v13061175openalex-snapshot
Improving Phage-Biofilm In Vitro Experimentation
inferredcites →https://doi.org/10.3934/microbiol.2017.2.186openalex-snapshot
Phage “delay” towards enhancing bacterial escape from biofilms: a more comprehensive way of viewing resistance to bacteriophages
inferredcites →https://doi.org/10.7554/elife.26163openalex-snapshot
Structural dynamics of RbmA governs plasticity of Vibrio cholerae biofilms
inferredcites →https://doi.org/10.7554/elife.65355openalex-snapshot
Matrix-trapped viruses can prevent invasion of bacterial biofilms by colonizing cells
inferredcites →https://doi.org/10.7717/peerj.2261openalex-snapshot
Phage on tap–a quick and efficient protocol for the preparation of bacteriophage laboratory stocks

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Experimental Approaches for Studying the Biofilm Matrix
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The Role of Matrix Components in Multispecies Coexistence in Biofilms
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Microbial Interactions Shape Spatial Organisation and Transcriptional Responses in a Model Mixed-Species Biofilm
inferred← citeshttps://doi.org/10.1007/s00705-025-06322-5openalex-snapshot
Distinct effects of mucin on phage-host interactions in model systems of beneficial and pathogenic bacteria
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Engineering bacteriophages for targeted superbug eradication
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Interspecies interactions in dairy biofilms drive community structure and response against cleaning and disinfection
inferred← citeshttps://doi.org/10.1016/j.bpj.2023.12.003openalex-snapshot
The dynamics of phage predation on a microcolony
inferred← citeshttps://doi.org/10.1016/j.coisb.2023.100468openalex-snapshot
Sustainable diversity of phage-bacteria systems
inferred← citeshttps://doi.org/10.1016/j.cub.2024.07.078openalex-snapshot
Dispersal of a dominant competitor can drive multispecies coexistence in biofilms
inferred← citeshttps://doi.org/10.1016/j.cub.2025.11.022openalex-snapshot
Bacterial conjugation can restructure biofilms and increase their resilience while constraining host cell dispersal
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Synergistic and antibiofilm activity of DNase I and glucose oxidase loaded chitosan nanoparticles against dual-species biofilms of Listeria monocytogenes and Salmonella
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Natural polysaccharide hydrogel with bioadhesion characters to synergistically enhance berberine's antibacterial effect by regulating the PTS system of Staphylococcus aureus
inferred← citeshttps://doi.org/10.1016/j.ijmm.2025.151668openalex-snapshot
Isolation and characterization of two novel oral bacteriophages with anti-biofilm activity against Cutibacterium acnes
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2024.116651openalex-snapshot
The assembly and ecological roles of biofilms attached to plastic debris of Ashmore reef
inferred← citeshttps://doi.org/10.1016/j.mib.2024.102481openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.micinf.2025.105531openalex-snapshot
Effects of sequential administration of phage cocktail, ciprofloxacin, and caspofungin on Staphylococcus aureus and Candida albicans dual-species biofilms
inferred← citeshttps://doi.org/10.1038/s41467-024-46399-1openalex-snapshot
Cell-lysis sensing drives biofilm formation in Vibrio cholerae
inferred← citeshttps://doi.org/10.1038/s41467-024-49840-7openalex-snapshot
Phage predation accelerates the spread of plasmid-encoded antibiotic resistance
inferred← citeshttps://doi.org/10.1038/s41522-025-00841-4openalex-snapshot
Two unrelated Pseudomonas aeruginosa phages require the exopolysaccharide Psl for infection
inferred← citeshttps://doi.org/10.1038/s41522-026-01048-xopenalex-snapshot
Wrinkle-like structures emerge from matrix complementarity and mechanical discontinuity in heterogenous biofilms
inferred← citeshttps://doi.org/10.1038/s41564-024-01842-3openalex-snapshot
Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infection
inferred← citeshttps://doi.org/10.1038/s42005-025-02078-1openalex-snapshot
Biomechanical modeling of spatiotemporal bacteria-phage competition
inferred← citeshttps://doi.org/10.1038/s42254-025-00849-xopenalex-snapshot
On the growth and form of bacterial colonies
inferred← citeshttps://doi.org/10.1073/pnas.2212650120openalex-snapshot
Breakdown of clonal cooperative architecture in multispecies biofilms and the spatial ecology of predation
inferred← citeshttps://doi.org/10.1073/pnas.2221624120openalex-snapshot
Community outcomes depend on cooperative biofilm structure
inferred← citeshttps://doi.org/10.1073/pnas.2417058122openalex-snapshot
Spatial propagation of temperate phages within and among biofilms
inferred← citeshttps://doi.org/10.1073/pnas.2423574122openalex-snapshot
Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms
inferred← citeshttps://doi.org/10.1073/pnas.2531341123openalex-snapshot
Temperate phages limit their own propagation under spatial constraint in biofilms on chitin
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Antimicrobial and antibiofilm properties of procyanidins: potential for clinical and biotechnological applications
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inferred← citeshttps://doi.org/10.1093/ismejo/wrag072openalex-snapshot
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inferred← citeshttps://doi.org/10.1093/jambio/lxaf136openalex-snapshot
Environmental phages: ecosystem dynamics, biotechnological applications and their limits, and future directions
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The Biology of Us
inferred← citeshttps://doi.org/10.1093/oso/9780197664797.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/oso/9780197664797.002.0004openalex-snapshot
Dedication
inferred← citeshttps://doi.org/10.1093/oso/9780197664797.002.0006openalex-snapshot
Tides of the Body
inferred← citeshttps://doi.org/10.1093/oso/9780197664797.002.0007openalex-snapshot
Preface
inferred← citeshttps://doi.org/10.1093/oso/9780197664797.002.0008openalex-snapshot
Glossary
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Looking for Sowbugs
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Life around Us
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Life beneath Our Feet
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Supermarket Systematics
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Fellow Travelers
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Inside and Outside
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Inside and Outside of Us
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Food and Eating
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Standing Up
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The Heart of the Matter
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Frogs and Fingers
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Laughing and Crying
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Sleep and Consciousness
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Telling Time
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What’s Next?
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Pattern formation by bacteria-phage interactions
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Pseudomonas aeruginosa surface motility and invasion into competing communities enhances interspecies antagonism
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Illuminating microbial mat assembly: Cyanobacteria and Chloroflexota cooperate to structure light-responsive biofilms
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Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infections
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Vibrio cholerae interaction with predatory bacteria on chitin suggests an alternative mode of biofilm formation in marine snow conditions
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Interfacial Morphodynamics of Proliferating Microbial Communities
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New Finnlakevirus Isolate FLiP ‐2 Provides Insight Into the Ecology of ssDNA Phages in Flavobacterium Hosts
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Polymicrobial Biofilms: Interkingdom Interactions, Resistance and Therapeutic Strategies
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Assessment of photodynamic therapy efficacy against Escherichia coli–Enterococcus faecalis biofilms using optical coherence tomography
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Antimicrobial PDT effectively destroys E. coli and E. faecalis orthopaedic biofilms compared to low efficacy of a tobramycin and vancomycin mixture: an in vitro study using optical coherence tomography
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Essential phage component induces resistance of bacterial community
inferred← citeshttps://doi.org/10.1128/mbio.00956-24openalex-snapshot
Pseudomonas aeruginosa surface motility and invasion into competing communities enhance interspecies antagonism
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From Fluctuations and Disorder to Scaling and Control: The Emergence of Resistance in Microbial Communities
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Biofilm spatial structure and superinfection immunity modulate inter-phage competition
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Interspecies interactions and biofilm development in a three-species biofilm model
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Progress in the study of mefloquine as an antibiotic adjuvant for combination bacterial inhibition treatment
inferred← citeshttps://doi.org/10.3389/fmicb.2023.1320345openalex-snapshot
Advances in bacteriophage-mediated strategies for combating polymicrobial biofilms
inferred← citeshttps://doi.org/10.3390/antibiotics12020245openalex-snapshot
Ecology and Evolutionary Biology of Hindering Phage Therapy: The Phage Tolerance vs. Phage Resistance of Bacterial Biofilms
inferred← citeshttps://doi.org/10.3390/antibiotics12040723openalex-snapshot
Bacteriophage Adsorption: Likelihood of Virion Encounter with Bacteria and Other Factors Affecting Rates
inferred← citeshttps://doi.org/10.3390/antibiotics14070629openalex-snapshot
The Ability of Bacteriophages to Reduce Biofilms Produced by Pseudomonas aeruginosa Isolated from Corneal Infections
inferred← citeshttps://doi.org/10.3390/foods13111703openalex-snapshot
Development of Predictive Modeling for Removal of Multispecies Biofilms of Salmonella Enteritidis, Escherichia coli, and Campylobacter jejuni from Poultry Slaughterhouse Surfaces
inferred← citeshttps://doi.org/10.3390/ijms24108941openalex-snapshot
Siphophage 0105phi7-2 of Bacillus thuringiensis: Novel Propagation, DNA, and Genome-Implied Assembly
inferred← citeshttps://doi.org/10.3390/ijms25042426openalex-snapshot
Inhibition of Biofilm Formation in Cutibacterium acnes, Staphylococcus aureus, and Candida albicans by the Phytopigment Shikonin
inferred← citeshttps://doi.org/10.3390/microorganisms14102290openalex-snapshot
From Antagonism to Coevolutionary Regulation: Multidimensional Phage–Biofilm Interaction Networks and Translational Targeted Anti-Infection Strategies
inferred← citeshttps://doi.org/10.3390/v16081275openalex-snapshot
Characterization and Anti-Biofilm Activity of Lytic Enterococcus Phage vB_Efs8_KEN04 against Clinical Isolates of Multidrug-Resistant Enterococcus faecalis in Kenya
inferred← citeshttps://doi.org/10.36233/0372-9311-761openalex-snapshot
Method for forming a static biofilm on various surfaces to evaluate the effectiveness of disinfectants
inferred← citeshttps://doi.org/10.48130/biocontam-0025-0008openalex-snapshot
Antimicrobial resistance in complex microbiomes: ecological evolution and public health risks
inferred← citeshttps://doi.org/10.5772/intechopen.1010132openalex-snapshot
Effects of Bacterial Biofilm on Immunity in Chronic Tonsillitis
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