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Decoding of Superimposed Traces Produced by Direct Sequencing of Heterozygous Indels

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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InSNP: A tool for automated detection and visualization of SNPs and InDels
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Bioinformatics challenges of new sequencing technology
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The impact of next-generation sequencing technology on genetics
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Incorporating information from length-mutational events into phylogenetic analysis
inferredcites →https://doi.org/10.1023/a:1014841612043openalex-snapshot
Insertion-deletion polymorphisms in 3′ regions of maize genes occur frequently and can be used as highly informative genetic markers
inferredcites →https://doi.org/10.1038/ng1925openalex-snapshot
Automating resequencing-based detection of insertion-deletion polymorphisms
inferredcites →https://doi.org/10.1073/pnas.0404231101openalex-snapshot
Nucleotide diversity and linkage disequilibrium in loblolly pine
inferredcites →https://doi.org/10.1073/pnas.0700890104openalex-snapshot
Extreme genomic variation in a natural population
inferredcites →https://doi.org/10.1080/10425170500356065openalex-snapshot
Heterozygous indels as useful tools in the reconstruction of DNA sequences and in the assessment of ploidy level and genomic constitution of hybrid organisms
inferredcites →https://doi.org/10.1093/bioinformatics/18.8.1137openalex-snapshot
ShiftDetector: detection of shift mutations
inferredcites →https://doi.org/10.1093/bioinformatics/btm152openalex-snapshot
AutoCSA, an algorithm for high throughput DNA sequence variant detection in cancer genomes
inferredcites →https://doi.org/10.1093/genetics/165.4.1843openalex-snapshot
Selective Constraints on Intron Evolution in Drosophila
inferredcites →https://doi.org/10.1093/hmg/ddi006openalex-snapshot
Comprehensive identification and characterization of diallelic insertion–deletion polymorphisms in 330 human candidate genes
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025563openalex-snapshot
Intraspecific nuclear DNA variation in Drosophila
inferredcites →https://doi.org/10.1101/gr.2034704openalex-snapshot
Characterization of Evolutionary Rates and Constraints in Three Mammalian Genomes
inferredcites →https://doi.org/10.1101/gr.2754005openalex-snapshot
novoSNP, a novel computational tool for sequence variation discovery
inferredcites →https://doi.org/10.1101/gr.4565806openalex-snapshot
An initial map of insertion and deletion (INDEL) variation in the human genome
inferredcites →https://doi.org/10.1101/gr.5661407openalex-snapshot
A tale of two templates: Automatically resolving double traces has many applications, including efficient PCR-based elucidation of alternative splices
inferredcites →https://doi.org/10.1101/gr.6151507openalex-snapshot
PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data
inferredcites →https://doi.org/10.1101/gr.8.3.175openalex-snapshot
Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
inferredcites →https://doi.org/10.1111/j.1471-8286.2006.01355.xopenalex-snapshot
Phase determination from direct sequencing of length‐variable DNA regions
inferredcites →https://doi.org/10.1111/j.1471-8286.2007.01857.xopenalex-snapshot
champuru 1.0: a computer software for unraveling mixtures of two DNA sequences of unequal lengths
inferredcites →https://doi.org/10.1177/117693430700300011openalex-snapshot
Choosing and Using Introns in Molecular Phylogenetics
inferredcites →https://doi.org/10.1385/1-59259-192-2:115openalex-snapshot
The Staden Package, 1998
inferredcites →https://doi.org/10.1534/genetics.106.060301openalex-snapshot
Nucleotide Variation and Haplotype Diversity in a 10-kb Noncoding Region in Three Continental Human Populations
inferredcites →https://doi.org/10.2144/000112552openalex-snapshot
TraceHaplotyper: Using Direct Sequencing to Determine the Phase of an Indel Followed by Biallelic SNPs

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Screening of LEP gene polymorphisms as a risk factor for obesity and type 2 diabetes in Iraqis.
inferred← citeshttps://doi.org/10.24072/pcjournal.180openalex-snapshot
Substantial genetic mixing among sexual and androgenetic lineages within the clam genus Corbicula
inferred← citeshttps://doi.org/10.3177/jnsv.65.s196openalex-snapshot
Gene Expression and Sequence Analysis of BADH1 Gene in CLSU Aromatic Rice (Oryza sativa L.) Accessions Subjected to Drought and Saline Condition
inferred← citeshttps://doi.org/10.3186/jjphytopath.80.s81openalex-snapshot
Molecular markers for genotyping anastomosis groups and understanding the population biology of Rhizoctonia species.
inferred← citeshttps://doi.org/10.3390/diagnostics16152302openalex-snapshot
The Asymmetric Threat of Maternal Cell Contamination in Prenatal Single-Gene Testing
inferred← citeshttps://doi.org/10.3390/insects12010021openalex-snapshot
Darwin Returns to the Galapagos: Genetic and Morphological Analyses Confirm the Presence of Tramea darwini at the Archipelago (Odonata, Libellulidae)
inferred← citeshttps://doi.org/10.3390/toxins8060188openalex-snapshot
Is Hybridization a Source of Adaptive Venom Variation in Rattlesnakes? A Test, Using a Crotalus scutulatus × viridis Hybrid Zone in Southwestern New Mexico
inferred← citeshttps://doi.org/10.34917/2255366openalex-snapshot
Molecular evolution and historical biogeography of new world birds
inferred← citeshttps://doi.org/10.3724/sp.j.1005.2009.00875openalex-snapshot
Intra-individual allele heterozygotes in phylogenetic analysis
inferred← citeshttps://doi.org/10.3750/aiep/02348openalex-snapshot
Mito-nuclear sequencing is paramount to correctly identify sympatric hybridizing fishes
inferred← citeshttps://doi.org/10.3897/jhr.29.12656openalex-snapshot
North-Western Palaearctic species of Pristiphora (Hymenoptera, Tenthredinidae)
inferred← citeshttps://doi.org/10.3897/jhr.59.12565openalex-snapshot
North-Western Palaearctic species of Pristiphora (Hymenoptera, Tenthredinidae)
inferred← citeshttps://doi.org/10.3897/jhr.59.12656openalex-snapshot
North-Western Palaearctic species of Pristiphora (Hymenoptera, Tenthredinidae)
inferred← citeshttps://doi.org/10.4236/oje.2014.417091openalex-snapshot
Impact of Natural Selection on Lignin and Cellulose Candidate Genes in a Natural Population of Eucalyptus urophylla
inferred← citeshttps://doi.org/10.48084/etasr.4107openalex-snapshot
The Usability Testing of SSAAT, a Bioinformatic Web Application for DNA Analysis at a Nucleotide Level
inferred← citeshttps://doi.org/10.58694/20.500.12479/1350openalex-snapshot
Sanger sequence automatic analysis tool development
inferred← citeshttps://doi.org/10.7717/peerj.15393openalex-snapshot
Integrative species delimitation helps to find the hidden diversity of the leaf-litter frog Ischnocnema manezinho (Garcia, 1996) (Anura, Brachycephalidae), endemic to the southern Atlantic Forest
inferred← citeshttps://doi.org/10.7717/peerj.5886openalex-snapshot
First steps towards assessing the evolutionary history and phylogeography of a widely distributed Neotropical grassland bird (Motacillidae:Anthus correndera)
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