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Evaluating Support for the Current Classification of Eukaryotic Diversity

https://doi.org/10.1371/journal.pgen.0020220
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.10376openalex-snapshot
Photosynthetic eukaryotes unite: endosymbiosis connects the dots
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Ancient Phylogenetic Relationships
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Foraminiferal Genera and Their Classification
inferredcites →https://doi.org/10.1007/bf00927175openalex-snapshot
Methods of systematic analysis: The relative superiority of phylogenetic systematics
inferredcites →https://doi.org/10.1007/pl00006573openalex-snapshot
The Rooting of the Universal Tree of Life Is Not Reliable
inferredcites →https://doi.org/10.1007/s00018-005-4539-zopenalex-snapshot
Lateral gene transfer in eukaryotes
inferredcites →https://doi.org/10.1007/s00239-002-2424-zopenalex-snapshot
Phylogeny of Choanozoa, Apusozoa, and Other Protozoa and Early Eukaryote Megaevolution
inferredcites →https://doi.org/10.1007/s00239-003-0015-2openalex-snapshot
Revised Small Subunit rRNA Analysis Provides Further Evidence that Foraminifera Are Related to Cercozoa
inferredcites →https://doi.org/10.1007/s00239-003-2490-xopenalex-snapshot
Phylogenetic Analysis of Eukaryotes Using Heat-Shock Protein Hsp90
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Reevaluation of the Evolutionary Position of Opalinids Based on 18S rDNA,and α- and β-Tubulin Gene Phylogenies
inferredcites →https://doi.org/10.1007/s00239-004-2638-3openalex-snapshot
Comparative Analysis of the Complete Plastid Genome Sequence of the Red Alga Gracilaria tenuistipitata var. liui Provides Insights into the Evolution of Rhodoplasts and Their Relationship to Other Plastids
inferredcites →https://doi.org/10.1007/s002390010183openalex-snapshot
Are Red Algae Plants? A Critical Evaluation of Three Key Molecular Data Sets
inferredcites →https://doi.org/10.1007/s002390010258openalex-snapshot
Mathematical Elegance with Biochemical Realism: The Covarion Model of Molecular Evolution
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The actin gene of the glaucocystophyte Cyanophora paradoxa: analysis of the coding region and introns, and an actin phylogeny of eukaryotes
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A new scenario of plastid evolution: plastid primary endosymbiosis before the divergence of the “Plantae,” emended
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Eukaryote kingdoms: Seven or nine?
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Endocytobiology II. Intracellular Space as Oligogenetic Ecosystem
inferredcites →https://doi.org/10.1016/j.cub.2004.06.041openalex-snapshot
Evolution: Red Algal Genome Affirms a Common Origin of All Plastids
inferredcites →https://doi.org/10.1016/j.cub.2005.06.040openalex-snapshot
Monophyly of Primary Photosynthetic Eukaryotes: Green Plants, Red Algae, and Glaucophytes
inferredcites →https://doi.org/10.1016/j.cub.2006.08.018openalex-snapshot
Minimal plastid genome evolution in the Paulinella endosymbiont
inferredcites →https://doi.org/10.1016/j.devcel.2004.08.010openalex-snapshot
The Unicellular Ancestry of Animal Development
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Molecular phylogeny of Amoebozoa and the evolutionary significance of the unikont Phalansterium
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A first glimpse into the pattern and scale of gene transfer in the Apicomplexa
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Life-history evolution and the origin of multicellularity
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18S Ribosomal RNA Gene Sequences of Cochliopodium (Himatismenida) and the Phylogeny of Amoebozoa
inferredcites →https://doi.org/10.1016/j.protis.2005.06.002openalex-snapshot
Molecular Phylogeny and Classification of the Lobose Amoebae
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A Plastid in the Making: Evidence for a Second Primary Endosymbiosis
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Manifestations of multicellularity: Dictyostelium reports in
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The tree of eukaryotes
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Phylogenetic position of Protoopalina intestinalis based on SSU rRNA gene sequence
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Magic bullets and golden rules: Data sampling in molecular phylogenetics
inferredcites →https://doi.org/10.1016/s0003-9365(97)80012-7openalex-snapshot
The identity and composition of the Euglenozoa
inferredcites →https://doi.org/10.1016/s0003-9365(97)80050-4openalex-snapshot
Sarcomonad ribosomal RNA sequences, rhizopod phylogeny, and the origin of euglyphid amoebae
inferredcites →https://doi.org/10.1016/s0003-9365(97)80051-6openalex-snapshot
Amoeboflagellates and mitochondrial cristae in eukaryote evolution: megasystematics of the new protozoan subkingdoms eozoa and neozoa
inferredcites →https://doi.org/10.1016/s0306-3623(97)90089-6openalex-snapshot
Molecular biology of parasitic protozoa
inferredcites →https://doi.org/10.1016/s0378-1119(00)00063-9openalex-snapshot
Microsporidia: accumulating molecular evidence that a group of amitochondriate and suspectedly primitive eukaryotes are just curious fungi
inferredcites →https://doi.org/10.1016/s0932-4739(96)80053-8openalex-snapshot
Corallochytrium, an enigmatic non-flagellate protozoan related to choanoflagellates
inferredcites →https://doi.org/10.1016/s0932-4739(99)80044-3openalex-snapshot
The ultrastructure of Carpediemonas membranifera (Eukaryota) with reference to the “excavate hypothesis”
inferredcites →https://doi.org/10.1016/s0959-437x(05)80192-3openalex-snapshot
Early evolution and the origin of eukaryotes
inferredcites →https://doi.org/10.1016/s1055-7903(03)00134-9openalex-snapshot
Are Ichthyosporea animals or fungi? Bayesian phylogenetic analysis of elongation factor 1α of Ichthyophonus irregularis
inferredcites →https://doi.org/10.1016/s1383-5769(98)80093-7openalex-snapshot
The molecular phylogeny of eukaryota: solid facts and uncertainties
inferredcites →https://doi.org/10.1016/s1434-4610(99)70040-4openalex-snapshot
Symbiomonas scintillans gen. et sp. nov. and Picophagus flagellatus gen. et sp. nov. (Heterokonta): Two New Heterotrophic Flagellates of Picoplanktonic Size
inferredcites →https://doi.org/10.1017/s0006323198005167openalex-snapshot
A revised six-kingdom system of life
inferredcites →https://doi.org/10.1017/s0953756204009876openalex-snapshot
Identity of the mtDNA haplotype(s) of Phytophthora infestans in historical specimens from the Irish Potato Famine
inferredcites →https://doi.org/10.1038/066627a0openalex-snapshot
Archiv für Protistenkunde
inferredcites →https://doi.org/10.1038/22099openalex-snapshot
Single gene circles in dinoflagellate chloroplast genomes
inferredcites →https://doi.org/10.1038/35011054openalex-snapshot
The origin of red algae and the evolution of chloroplasts
inferredcites →https://doi.org/10.1038/35083562openalex-snapshot
Morphological and ecological complexity in early eukaryotic ecosystems
inferredcites →https://doi.org/10.1046/j.1529-8817.2001.01126.xopenalex-snapshot
PRIMARY AND SECONDARY ENDOSYMBIOSIS AND THE ORIGIN OF PLASTIDS
inferredcites →https://doi.org/10.1073/pnas.0308602101openalex-snapshot
The twilight of Heliozoa and rise of Rhizaria, an emerging supergroup of amoeboid eukaryotes
inferredcites →https://doi.org/10.1073/pnas.032662799openalex-snapshot
The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium , Entamoeba , and Mastigamoeba
inferredcites →https://doi.org/10.1073/pnas.182432999openalex-snapshot
Evolutionary analysis of Arabidopsis , cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
inferredcites →https://doi.org/10.1073/pnas.242379899openalex-snapshot
The single, ancient origin of chromist plastids
inferredcites →https://doi.org/10.1073/pnas.90.24.11558openalex-snapshot
Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins.
inferredcites →https://doi.org/10.1073/pnas.93.14.7085openalex-snapshot
Bootstrap confidence levels for phylogenetic trees.
inferredcites →https://doi.org/10.1073/pnas.93.21.11907openalex-snapshot
A novel clade of protistan parasites near the animal-fungal divergence.
inferredcites →https://doi.org/10.1073/pnas.93.23.13429openalex-snapshot
Bootstrap confidence levels for phylogenetic trees
inferredcites →https://doi.org/10.1078/1434461000164openalex-snapshot
Small-Subunit Ribosomal RNA Gene Sequences of Phaeodarea Challenge the Monophyly of Haeckel's Radiolaria
inferredcites →https://doi.org/10.1078/143446103322454112openalex-snapshot
Phylogeny and Classification of Phylum Cercozoa (Protozoa)
inferredcites →https://doi.org/10.1080/10635150390132911openalex-snapshot
Is Sparse Taxon Sampling a Problem for Phylogenetic Inference?
inferredcites →https://doi.org/10.1080/10635150490468530openalex-snapshot
Inferring Phylogenies.—Joseph Felsenstein. 2003. Sinauer Associates, Sunderland, Massachusetts.
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Phylogenetic Artifacts Can be Caused by Leucine, Serine, and Arginine Codon Usage Heterogeneity: Dinoflagellate Plastid Origins as a Case Study
inferredcites →https://doi.org/10.1080/10635150590924208openalex-snapshot
Polytomies and Bayesian Phylogenetic Inference
inferredcites →https://doi.org/10.1080/10635150590946745openalex-snapshot
The Systematic Component of Phylogenetic Error as a Function of Taxonomic Sampling Under Parsimony
inferredcites →https://doi.org/10.1080/106351598260987openalex-snapshot
Taxonomic Sampling, Phylogenetic Accuracy, and Investigator Bias
inferredcites →https://doi.org/10.1080/15216540310001592834openalex-snapshot
Hydrogenosomes, Mitochondria and Early Eukaryotic Evolution
inferredcites →https://doi.org/10.1086/303287openalex-snapshot
The Diversity of Eukaryotes
inferredcites →https://doi.org/10.1086/303288openalex-snapshot
Ultrastructure as a Control for Protistan Molecular Phylogeny
inferredcites →https://doi.org/10.1086/303289openalex-snapshot
The Tangled Web: Gene Genealogies and the Origin of Eukaryotes
inferredcites →https://doi.org/10.1086/303290openalex-snapshot
Reconstructing Early Events in Eukaryotic Evolution
inferredcites →https://doi.org/10.1086/303291openalex-snapshot
Tracing the Thread of Plastid Diversity Through the Tapestry of Life
inferredcites →https://doi.org/10.1086/383584openalex-snapshot
Inferring Phylogenies.
inferredcites →https://doi.org/10.1093/bioinformatics/13.5.555openalex-snapshot
PAML: a program package for phylogenetic analysis by maximum likelihood
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MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/dnares/12.2.151openalex-snapshot
The Complete Plastid Genome Sequence of the Haptophyte Emiliania huxleyi: a Comparison to Other Plastid Genomes
inferredcites →https://doi.org/10.1093/molbev/msg006openalex-snapshot
A Novel Polyubiquitin Structure in Cercozoa and Foraminifera: Evidence for a New Eukaryotic Supergroup
inferredcites →https://doi.org/10.1093/molbev/msg195openalex-snapshot
Nucleus-Encoded, Plastid-Targeted Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Indicates a Single Origin for Chromalveolate Plastids
inferredcites →https://doi.org/10.1093/molbev/msg201openalex-snapshot
Phylogeny of Lobose Amoebae Based on Actin and Small-Subunit Ribosomal RNA Genes
inferredcites →https://doi.org/10.1093/molbev/msh002openalex-snapshot
Origin and Phylogeny of Chloroplasts Revealed by a Simple Correlation Analysis of Complete Genomes
inferredcites →https://doi.org/10.1093/molbev/msh130openalex-snapshot
Covarion Shifts Cause a Long-Branch Attraction Artifact That Unites Microsporidia and Archaebacteria in EF-1α Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msi118openalex-snapshot
Tertiary Endosymbiosis Driven Genome Evolution in Dinoflagellate Algae
inferredcites →https://doi.org/10.1093/molbev/msi121openalex-snapshot
More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy
inferredcites →https://doi.org/10.1093/molbev/msi172openalex-snapshot
Chlorophyll c–Containing Plastid Relationships Based on Analyses of a Multigene Data Set with All Four Chromalveolate Lineages
inferredcites →https://doi.org/10.1093/molbev/msi245openalex-snapshot
Inference of the Phylogenetic Position of Oxymonads Based on Nine Genes: Support for Metamonada and Excavata
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The Protistan Origins of Animals and Fungi
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Comprehensive Multigene Phylogenies of Excavate Protists Reveal the Evolutionary Positions of “Primitive” Eukaryotes
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Chimeric Plastid Proteome in the Florida “Red Tide” Dinoflagellate Karenia brevis
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Molecular Biology of Parasitic Protozoa
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SSU rRNA-based Phylogenetic Position of the Genera Amoeba and Chaos (Lobosea, Gymnamoebia): The Origin of Gymnamoebae Revisited
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003875openalex-snapshot
Oxymonads Are Closely Related to the Excavate Taxon Trimastix
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003941openalex-snapshot
Foraminifera and Cercozoa Are Related in Actin Phylogeny: Two Orphans Find a Home?
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Evolutionary History of “Early-Diverging” Eukaryotes: The Excavate Taxon Carpediemonas is a Close Relative of Giardia1
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Retortamonad Flagellates are Closely Related to Diplomonads—Implications for the History of Mitochondrial Function in Eukaryote Evolution
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Testing for Differences in Rates-Across-Sites Distributions in Phylogenetic Subtrees
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026235openalex-snapshot
Evidence from Beta-Tubulin Phylogeny that Microsporidia Evolved from Within the Fungi
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026362openalex-snapshot
Phylogeny of Eukaryotes Based on Ribosomal RNA: Long-Branch Attraction and Models of Sequence Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040216openalex-snapshot
Comparisons of nuclear-encoded small-subunit ribosomal RNAs reveal the evolutionary position of the Glaucocystophyta.
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Sampling properties of DNA sequence data in phylogenetic analysis.
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Cases in which Parsimony or Compatibility Methods will be Positively Misleading
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Gene Trees in Species Trees
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Entamoeba histolytica: an update
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The opalozoanApusomonasis related to the common ancestor of animals, fungi, and choanoflagellates
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Early–branching or fast–evolving eukaryotes? An answer based on slowly evolving positions
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Only six kingdoms of life
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The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa.
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Lateral gene transfers and the evolution of eukaryotes: theories and data.
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The classification of lower organisms
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The excavate protozoan phyla Metamonada Grasse emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa
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Cytoskeletal organization, phylogenetic affinities and systematics in the contentious taxon Excavata (Eukaryota)
inferredcites →https://doi.org/10.1099/ijs.0.02597-0openalex-snapshot
Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies
inferredcites →https://doi.org/10.1099/ijs.0.63216-0openalex-snapshot
On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
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An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
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The origins of plastids
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Molecular Evolutionary Analyses of Nuclear‐Encoded Small Subunit Ribosomal RNA Identify an Independent Rhizopod Lineage Containing the Euglyphina and the Chlorarachniophyta
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The Phylogenetic Position of Alpha‐ and Beta‐Tubulins from the Chlorarachnion Host and Cercomonas (Cercozoa)
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Principles of Protein and Lipid Targeting in Secondary Symbiogenesis: Euglenoid, Dinoflagellate, and Sporozoan Plastid Origins and the Eukaryote Family Tree 1 , 2
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The Nucleariid Amoebae: More Protists at the Animal‐Fungal Boundary
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Molecular Phylogeny of Three Oxymonad Genera: Pyrsonympha, Dinenympha and Oxymonas
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Actin and Ubiquitin Protein Sequences Support a Cercozoan/Foraminiferan Ancestry for the Plasmodiophorid Plant Pathogens
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The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
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Ultrastructural Description ofBreviata anathema, N. Gen., N. Sp., the Organism Previously Studied as “Mastigamoeba invertens”
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Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
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The Deep Roots of Eukaryotes
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New Concepts of Kingdoms of Organisms
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A Kingdom-Level Phylogeny of Eukaryotes Based on Combined Protein Data
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Monophyletic Origins of the Metazoa: an Evolutionary Link with Fungi
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Gene Replacement of Fructose-1,6-Bisphosphate Aldolase Supports the Hypothesis of a Single Photosynthetic Ancestor of Chromalveolates
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Simplicity and Complexity of Microsporidian Genomes
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Single, Ancient Origin of a Plastid Metabolite Translocator Family in Plantae from an Endomembrane-Derived Ancestor
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The DNA of ciliated protozoa
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Phylogenetic Systematics
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PHYLOGENIES FROM MOLECULAR SEQUENCES: INFERENCE AND RELIABILITY
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MOLECULAR PHYLOGENY OF THE HAPLOSPORIDIA BASED ON TWO INDEPENDENT GENE SEQUENCES
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Five Kingdoms: An Illustrated Guide to the Phyla of Life on Earth
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Gene Trees and Species Trees: Molecular Systematics as One-Character Taxonomy
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An Ordinal Classification for the Families of Flowering Plants
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A Framework for the Quantitative Study of Evolutionary Trees
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Diversity and evolutionary history of plastids and their hosts
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Generelle Morphologie der Organismen : allgemeine Grundzuge der organischen Formen-Wissenschaft, mechanisch begrundet durch die von Charles Darwin reformirte Descendenz-Theorie /
inferredcites →https://doi.org/10.5962/bhl.title.4474openalex-snapshot
The classification of lower organisms

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1007/978-3-319-93284-2_5openalex-snapshot
Phytoplankton Responses to Marine Climate Change – An Introduction
inferred← citeshttps://doi.org/10.1007/978-3-642-27833-4_48-2openalex-snapshot
Algae
inferred← citeshttps://doi.org/10.1007/978-3-642-27833-4_537-3openalex-snapshot
Eukarya
inferred← citeshttps://doi.org/10.1007/978-3-642-28863-0_6openalex-snapshot
Evolution of Purinergic Signalling
inferred← citeshttps://doi.org/10.1007/978-3-662-44185-5_48openalex-snapshot
Algae
inferred← citeshttps://doi.org/10.1007/978-3-662-44185-5_537openalex-snapshot
Eukarya
inferred← citeshttps://doi.org/10.1007/978-3-662-65093-6_48openalex-snapshot
Algae
inferred← citeshttps://doi.org/10.1007/978-3-662-65093-6_537openalex-snapshot
Eukarya
inferred← citeshttps://doi.org/10.1007/978-90-481-8639-6_6openalex-snapshot
Genomics of Marine Algae
inferred← citeshttps://doi.org/10.1007/s00239-020-09966-wopenalex-snapshot
Evolutionary History of Alzheimer Disease-Causing Protein Family Presenilins with Pathological Implications
inferred← citeshttps://doi.org/10.1007/s00294-011-0357-zopenalex-snapshot
The falsifiability of the models for the origin of eukaryotes
inferred← citeshttps://doi.org/10.1007/s00412-014-0486-5openalex-snapshot
Structural organization of very small chromosomes: study on a single-celled evolutionary distant eukaryote Giardia intestinalis
inferred← citeshttps://doi.org/10.1007/s10059-012-0169-0openalex-snapshot
Development of Single-Nucleotide Polymorphism-Based Phylum-Specific PCR Amplification Technique: Application to the Community Analysis Using Ciliates as a Reference Organism
inferred← citeshttps://doi.org/10.1007/s10265-021-01364-7openalex-snapshot
Weak population spatial genetic structure and low infraspecific specificity for fungal partners in the rare mycoheterotrophic orchid Epipogium aphyllum
inferred← citeshttps://doi.org/10.1007/s10539-010-9214-6openalex-snapshot
Ernst Mayr, the tree of life, and philosophy of biology
inferred← citeshttps://doi.org/10.1007/s11099-017-0685-4openalex-snapshot
Carbonic anhydrase - a universal enzyme of the carbon-based life
inferred← citeshttps://doi.org/10.1007/s11356-019-04563-xopenalex-snapshot
Palm oil and its wastes as bioenergy sources: a comprehensive review
inferred← citeshttps://doi.org/10.1007/s12038-018-9794-xopenalex-snapshot
A putative NEM1 homologue regulates lipid droplet biogenesis via PAH1 in Tetrahymena thermophila
inferred← citeshttps://doi.org/10.1007/s12223-009-0048-zopenalex-snapshot
On the origin of chloroplasts, import mechanisms of chloroplast-targeted proteins, and loss of photosynthetic ability — review
inferred← citeshttps://doi.org/10.1007/s13127-017-0330-xopenalex-snapshot
Ultrastructural and immunocytochemical investigation of paramylon combined with new 18S rDNA-based secondary structure analysis clarifies phylogenetic affiliation of Entosiphon sulcatum (Euglenida: Euglenozoa)
inferred← citeshttps://doi.org/10.1007/s13199-011-0129-zopenalex-snapshot
Origin of eukaryotic cells: 40 years on
inferred← citeshttps://doi.org/10.1007/s13238-011-1017-2openalex-snapshot
Structural diversity of eukaryotic 18S rRNA and its impact on alignment and phylogenetic reconstruction
inferred← citeshttps://doi.org/10.1016/b978-0-12-385967-9.00006-2openalex-snapshot
Conservation and Innovation in Tetrahymena Membrane Traffic: Proteins, Lipids, and Compartments
inferred← citeshttps://doi.org/10.1016/b978-0-12-817094-6.00001-8openalex-snapshot
Ecology and diversity of biota in Sundarban regions
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2009.04.008openalex-snapshot
Enrichment potential of HUFA-rich thraustochytrid Schizochytrium mangrovei for the rotifer Brachionus plicatilis
inferred← citeshttps://doi.org/10.1016/j.autneu.2010.05.007openalex-snapshot
Evolution of neuronal signalling: Transmitters and receptors
inferred← citeshttps://doi.org/10.1016/j.biombioe.2007.10.001openalex-snapshot
Resource evaluation of typical energy plants and possible functional zone planning in China
inferred← citeshttps://doi.org/10.1016/j.bpj.2013.03.066openalex-snapshot
New Organelles by Gene Duplication in a Biophysical Model of Eukaryote Endomembrane Evolution
inferred← citeshttps://doi.org/10.1016/j.cbd.2008.11.001openalex-snapshot
Evolutionary analysis of orthologous cDNA sequences from cultured and symbiotic dinoflagellate symbionts of reef-building corals (Dinophyceae: Symbiodinium)
inferred← citeshttps://doi.org/10.1016/j.cbpc.2017.03.012openalex-snapshot
Identification and molecular characterization of cytochrome P450 (CYP450) family genes in the marine ciliate Euplotes crassus : The effect of benzo[ a ]pyrene and beta-naphthoflavone
inferred← citeshttps://doi.org/10.1016/j.chemosphere.2023.138412openalex-snapshot
The effects of long-term hexabromocyclododecanes contamination on microbial communities in the microcosms
inferred← citeshttps://doi.org/10.1016/j.cogsys.2018.11.008openalex-snapshot
Neutroscopic data synthesis of biodegradable polymer for industrial bio robots
inferred← citeshttps://doi.org/10.1016/j.colsurfb.2007.05.003openalex-snapshot
The mutual responses of higher plants to environment: Physiological and microbiological aspects
inferred← citeshttps://doi.org/10.1016/j.crvi.2008.07.003openalex-snapshot
Molecular phylogeny: reconstructing the forest
inferred← citeshttps://doi.org/10.1016/j.cub.2007.03.069openalex-snapshot
Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages
inferred← citeshttps://doi.org/10.1016/j.cub.2008.11.067openalex-snapshot
The Puzzle of Plastid Evolution
inferred← citeshttps://doi.org/10.1016/j.cub.2008.12.032openalex-snapshot
Evolution: Revisiting the Root of the Eukaryote Tree
inferred← citeshttps://doi.org/10.1016/j.ejop.2007.12.001openalex-snapshot
Ultrastructure and molecular phylogeny of Stephanopogon minuta: An enigmatic microeukaryote from marine interstitial environments
inferred← citeshttps://doi.org/10.1016/j.exppara.2018.02.010openalex-snapshot
The therapeutic strategies against Naegleria fowleri
inferred← citeshttps://doi.org/10.1016/j.jhazmat.2022.129159openalex-snapshot
Community reassemblies of eukaryotes, prokaryotes, and viruses in the hexabromocyclododecanes-contaminated microcosms
inferred← citeshttps://doi.org/10.1016/j.jtbi.2019.04.002openalex-snapshot
Testing the rogue taxa hypothesis for clustering instability
inferred← citeshttps://doi.org/10.1016/j.palwor.2010.12.004openalex-snapshot
The genetic diversity and molecular phylogeny of Radiolaria in South China Sea
inferred← citeshttps://doi.org/10.1016/j.plipres.2014.02.001openalex-snapshot
Evolution of galactoglycerolipid biosynthetic pathways – From cyanobacteria to primary plastids and from primary to secondary plastids
inferred← citeshttps://doi.org/10.1016/j.protis.2007.05.002openalex-snapshot
A Multigene Analysis of Corallomyxa tenera sp. nov. Suggests its Membership in a Clade that Includes Gromia, Haplosporidia and Foraminifera
inferred← citeshttps://doi.org/10.1016/j.protis.2007.12.001openalex-snapshot
Sampling Gene Diversity Across the Supergroup Amoebozoa: Large EST Data Sets from Acanthamoeba castellanii, Hartmannella vermiformis, Physarum polycephalum, Hyperamoeba dachnaya and Hyperamoeba sp.
inferred← citeshttps://doi.org/10.1016/j.protis.2010.03.001openalex-snapshot
Palpitomonas bilix gen. et sp. nov.: A Novel Deep-branching Heterotroph Possibly Related to Archaeplastida or Hacrobia
inferred← citeshttps://doi.org/10.1016/j.protis.2010.08.004openalex-snapshot
The Ultrastructure of Ancyromonas, a Eukaryote without Supergroup Affinities
inferred← citeshttps://doi.org/10.1016/j.protis.2014.08.003openalex-snapshot
First Evidence of Mariner-like Transposons in the Genome of the Marine Microalga Amphora acutiuscula (Bacillariophyta)
inferred← citeshttps://doi.org/10.1016/j.protis.2016.05.003openalex-snapshot
The Species Problem in Myxomycetes Revisited
inferred← citeshttps://doi.org/10.1016/j.tree.2008.02.004openalex-snapshot
The eukaryotic tree of life: endosymbiosis takes its TOL
inferred← citeshttps://doi.org/10.1016/j.virusres.2017.10.020openalex-snapshot
Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.11.035openalex-snapshot
Lateral transfer of the gene for a widely used marker, α-tubulin, indicated by a multi-protein study of the phylogenetic position of Andalucia (Excavata)
inferred← citeshttps://doi.org/10.1016/j.ympev.2009.04.012openalex-snapshot
Interrelationships of chromalveolates within a broadly sampled tree of photosynthetic protists
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.02.015openalex-snapshot
Evolution of cysteine patterns in the large extracellular loop of tetraspanins from animals, fungi, plants and single-celled eukaryotes
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.010openalex-snapshot
Identification of new molecular markers for assembling the eukaryotic tree of life
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.05.006openalex-snapshot
The effects of model choice and mitigating bias on the ribosomal tree of life
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.08.005openalex-snapshot
Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.08.011openalex-snapshot
Multigene phylogeny resolves deep branching of Amoebozoa
inferred← citeshttps://doi.org/10.1038/srep24874openalex-snapshot
The All-Data-Based Evolutionary Hypothesis of Ciliated Protists with a Revised Classification of the Phylum Ciliophora (Eukaryota, Alveolata)
inferred← citeshttps://doi.org/10.1042/bj20081986openalex-snapshot
Evolution of protein phosphatases in plants and animals
inferred← citeshttps://doi.org/10.1051/e3sconf/202017601004openalex-snapshot
Influence of chlorella on hematological parameters and metabolism of rhesus monkeys
inferred← citeshttps://doi.org/10.1055/s-0043-1764427openalex-snapshot
Investigation of the effects of Bipolar Radiofrequency Energy on the Structural Morphology of Dental Plaque
inferred← citeshttps://doi.org/10.1073/pnas.0807880106openalex-snapshot
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
inferred← citeshttps://doi.org/10.1080/07388551.2019.1624945openalex-snapshot
Progress in physicochemical parameters of microalgae cultivation for biofuel production
inferred← citeshttps://doi.org/10.1080/10383441.2010.10854685openalex-snapshot
Taxonomic Conceptions of Algae, Animals, Fungi and Plants in Granting Intellectual Property Privileges
inferred← citeshttps://doi.org/10.1080/17429140701586357openalex-snapshot
Responses of higher plants to abiotic stresses and agricultural sustainable development
inferred← citeshttps://doi.org/10.1093/gbe/evp011openalex-snapshot
Analysis of Rare Genomic Changes Does Not Support the Unikont–Bikont Phylogeny and Suggests Cyanobacterial Symbiosis as the Point of Primary Radiation of Eukaryotes
inferred← citeshttps://doi.org/10.1093/gbe/evr130openalex-snapshot
Phylogenetic Analysis of Mitochondrial Outer Membrane β-Barrel Channels
inferred← citeshttps://doi.org/10.1093/gbe/evu218openalex-snapshot
The Mitochondrial Genomes of the Glaucophytes Gloeochaete wittrockiana and Cyanoptyche gloeocystis: Multilocus Phylogenetics Suggests a Monophyletic Archaeplastida
inferred← citeshttps://doi.org/10.1093/gbe/evw196openalex-snapshot
Phylogenetic Resolution of Deep Eukaryotic and Fungal Relationships Using Highly Conserved Low-Copy Nuclear Genes
inferred← citeshttps://doi.org/10.1093/molbev/msm089openalex-snapshot
Phylogenomic Analysis Supports the Monophyly of Cryptophytes and Haptophytes and the Association of Rhizaria with Chromalveolates
inferred← citeshttps://doi.org/10.1093/molbev/msm217openalex-snapshot
Protist Homologs of the Meiotic Spo11 Gene and Topoisomerase VI reveal an Evolutionary History of Gene Duplication and Lineage-Specific Loss
inferred← citeshttps://doi.org/10.1093/molbev/msn032openalex-snapshot
The Dynamic Nature of Eukaryotic Genomes
inferred← citeshttps://doi.org/10.1093/molbev/msn039openalex-snapshot
Extremely Intron-Rich Genes in the Alveolate Ancestors Inferred with a Flexible Maximum-Likelihood Approach
inferred← citeshttps://doi.org/10.1093/molbev/msq200openalex-snapshot
Evolution of the Actin Gene Family in Testate Lobose Amoebae (Arcellinida) is Characterized by Two Distinct Clades of Paralogs and Recent Independent Expansions
inferred← citeshttps://doi.org/10.1093/molbev/msr124openalex-snapshot
Insights into the Evolution of Vitamin B12 Auxotrophy from Sequenced Algal Genomes
inferred← citeshttps://doi.org/10.1093/molbev/mss001openalex-snapshot
Collodictyon--An Ancient Lineage in the Tree of Eukaryotes
inferred← citeshttps://doi.org/10.1093/mp/ssq040openalex-snapshot
Phylogenetic Relationships of 3/3 and 2/2 Hemoglobins in Archaeplastida Genomes to Bacterial and Other Eukaryote Hemoglobins
inferred← citeshttps://doi.org/10.1093/nar/gkn108openalex-snapshot
A role for Caf1 in mRNA deadenylation and decay in trypanosomes and human cells
inferred← citeshttps://doi.org/10.1093/nar/gkt1209openalex-snapshot
The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks
inferred← citeshttps://doi.org/10.1093/plankt/fbq125openalex-snapshot
Diversity and distribution of planktonic protists in the northern South China Sea
inferred← citeshttps://doi.org/10.1093/sysbio/syq037openalex-snapshot
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
inferred← citeshttps://doi.org/10.1093/sysbio/sys026openalex-snapshot
Turning the Crown Upside Down: Gene Tree Parsimony Roots the Eukaryotic Tree of Life
inferred← citeshttps://doi.org/10.1098/rsos.160283openalex-snapshot
Cytoskeletal architecture and its evolutionary significance in amoeboid eukaryotes and their mode of locomotion
inferred← citeshttps://doi.org/10.1098/rstb.2008.0031openalex-snapshot
Energy metabolism among eukaryotic anaerobes in light of Proterozoic ocean chemistry
inferred← citeshttps://doi.org/10.1099/ijs.0.65310-0openalex-snapshot
Multigene phylogenies of clonal Spumella-like strains, a cryptic heterotrophic nanoflagellate, isolated from different geographical regions
inferred← citeshttps://doi.org/10.1101/cshperspect.a016147openalex-snapshot
The Eukaryotic Tree of Life from a Global Phylogenomic Perspective
inferred← citeshttps://doi.org/10.1104/pp.111.173500openalex-snapshot
Plastid Origin and Evolution: New Models Provide Insights into Old Problems
inferred← citeshttps://doi.org/10.1105/tpc.15.00492openalex-snapshot
Whole-Genome Resequencing Reveals Extensive Natural Variation in the Model Green Alga Chlamydomonas reinhardtii
inferred← citeshttps://doi.org/10.1111/j.1438-8677.2010.00427.xopenalex-snapshot
The life cycle of the amoeboid algaSynchroma grande(Synchromophyceae, Heterokontophyta) – highly adapted yet equally equipped for rapid diversification in benthic habitats
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2007.00432.xopenalex-snapshot
PHYLOGENOMICS AND SECONDARY PLASTIDS: A LOOK BACK AND A LOOK AHEAD1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2007.00433.xopenalex-snapshot
ENDOSYMBIOTIC AND HORIZONTAL GENE TRANSFER IN CHROMALVEOLATES1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2008.00626.xopenalex-snapshot
A CELLULOSE SYNTHASE (CESA) GENE FROM THE RED ALGA PORPHYRA YEZOENSIS (RHODOPHYTA)1
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2008.00308.xopenalex-snapshot
A Hierarchical View of Convergent Evolution in Microbial Eukaryotes1
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2009.00460.xopenalex-snapshot
Using Protistan Examples to Dispel the Myths of Intelligent Design
inferred← citeshttps://doi.org/10.1111/j.1742-4658.2008.06488.xopenalex-snapshot
Structure, regulation and evolution of Nox‐family NADPH oxidases that produce reactive oxygen species
inferred← citeshttps://doi.org/10.1111/jicd.12471openalex-snapshot
In vitro evaluation of the effects of Ultrasound Tongue Scraper on bacteria and biofilm formation
inferred← citeshttps://doi.org/10.1111/tpj.12145openalex-snapshot
Evolution of microtubule organizing centers across the tree of eukaryotes
inferred← citeshttps://doi.org/10.1111/zsc.12700openalex-snapshot
Comparative genomics provides insights into the evolutionary history of the phylum Ciliophora (Eukaryota, Alveolata) and uncovers the adaptive evolution of anaerobic ciliate classes
inferred← citeshttps://doi.org/10.1128/ec.00058-15openalex-snapshot
Secretion of Polypeptide Crystals from Tetrahymena thermophila Secretory Organelles (Mucocysts) Depends on Processing by a Cysteine Cathepsin, Cth4p
inferred← citeshttps://doi.org/10.1128/ec.05106-11openalex-snapshot
RNA-Mediated Silencing in Algae: Biological Roles and Tools for Analysis of Gene Function
inferred← citeshttps://doi.org/10.1128/mbio.01770-25openalex-snapshot
Rethinking large-scale phylogenomics with EukPhylo v.1.0, a flexible toolkit to enable phylogeny-informed data curation and analyses of diverse eukaryotic lineages
inferred← citeshttps://doi.org/10.1146/annurev-micro-090110-102808openalex-snapshot
Origin and Diversification of Eukaryotes
inferred← citeshttps://doi.org/10.1146/annurev.genet.41.110306.130134openalex-snapshot
The Origin and Establishment of the Plastid in Algae and Plants
inferred← citeshttps://doi.org/10.1146/annurev.genet.42.110807.091417openalex-snapshot
Genomic Insights into Marine Microalgae
inferred← citeshttps://doi.org/10.1146/annurev.micro.091208.073203openalex-snapshot
Gene Transfer and Diversification of Microbial Eukaryotes
inferred← citeshttps://doi.org/10.1152/physrev.00011.2012openalex-snapshot
Voltage-Gated Proton Channels: Molecular Biology, Physiology, and Pathophysiology of the HVFamily
inferred← citeshttps://doi.org/10.11588/heidok.00013829openalex-snapshot
The role of TbZC3H11 in the trypanosomal heat shock response
inferred← citeshttps://doi.org/10.11606/d.46.2012.tde-26042013-153410openalex-snapshot
Ritmos circadianos em Gracilaria birdiae (Rhodophyta): oscilação do desempenho fotossintético e caracterização enzimática da nitrato redutase
inferred← citeshttps://doi.org/10.1186/1471-2148-7-173openalex-snapshot
Horizontal gene transfer in chromalveolates
inferred← citeshttps://doi.org/10.1186/1471-2148-8-14openalex-snapshot
Broadly sampled multigene trees of eukaryotes
inferred← citeshttps://doi.org/10.1186/1471-2148-9-253openalex-snapshot
Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids
inferred← citeshttps://doi.org/10.1186/1471-2164-10-208openalex-snapshot
Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila
inferred← citeshttps://doi.org/10.1186/1745-6150-2-21openalex-snapshot
The Biological Big Bang model for the major transitions in evolution
inferred← citeshttps://doi.org/10.1186/gb-2008-9-7-r109openalex-snapshot
Concerted gene recruitment in early plant evolution
inferred← citeshttps://doi.org/10.1186/gb-2010-11-5-209openalex-snapshot
The origin and early evolution of eukaryotes in the light of phylogenomics
inferred← citeshttps://doi.org/10.1186/gb-2011-12-1-r4openalex-snapshot
Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires
inferred← citeshttps://doi.org/10.1186/s12862-019-1552-7openalex-snapshot
tRNA functional signatures classify plastids as late-branching cyanobacteria
inferred← citeshttps://doi.org/10.1186/s12864-016-3062-yopenalex-snapshot
Evolutionary hallmarks of the human proteome: chasing the age and coregulation of protein-coding genes
inferred← citeshttps://doi.org/10.1201/b10425-3openalex-snapshot
Putting Animals in their Place Within a Context of Eukaryotic Innovations
inferred← citeshttps://doi.org/10.1242/jcs.013250openalex-snapshot
Evolution of the eukaryotic membrane-trafficking system: origin, tempo and mode
inferred← citeshttps://doi.org/10.1371/journal.pbio.1001094openalex-snapshot
Gene Gain and Loss during Evolution of Obligate Parasitism in the White Rust Pathogen of Arabidopsis thaliana
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1002701openalex-snapshot
This Déjà Vu Feeling—Analysis of Multidomain Protein Evolution in Eukaryotic Genomes
inferred← citeshttps://doi.org/10.1371/journal.pone.0000790openalex-snapshot
Phylogenomics Reshuffles the Eukaryotic Supergroups
inferred← citeshttps://doi.org/10.1371/journal.pone.0002205openalex-snapshot
Chlamydiae Has Contributed at Least 55 Genes to Plantae with Predominantly Plastid Functions
inferred← citeshttps://doi.org/10.1371/journal.pone.0002621openalex-snapshot
EEF2 Analysis Challenges the Monophyly of Archaeplastida and Chromalveolata
inferred← citeshttps://doi.org/10.1371/journal.pone.0006754openalex-snapshot
Eumycetozoa = Amoebozoa?: SSUrDNA Phylogeny of Protosteloid Slime Molds and Its Significance for the Amoebozoan Supergroup
inferred← citeshttps://doi.org/10.1371/journal.pone.0022269openalex-snapshot
Multiple Independent Fusions of Glucose-6-Phosphate Dehydrogenase with Enzymes in the Pentose Phosphate Pathway
inferred← citeshttps://doi.org/10.1371/journal.pone.0023526openalex-snapshot
Radiolaria Divided into Polycystina and Spasmaria in Combined 18S and 28S rDNA Phylogeny
inferred← citeshttps://doi.org/10.1371/journal.pone.0119248openalex-snapshot
A Higher Level Classification of All Living Organisms
inferred← citeshttps://doi.org/10.1371/journal.pone.0151934openalex-snapshot
Evolution of Pentameric Ligand-Gated Ion Channels: Pro-Loop Receptors
inferred← citeshttps://doi.org/10.1371/journal.pone.0191653openalex-snapshot
16S rRNA gene metabarcoding and TEM reveals different ecological strategies within the genus Neogloboquadrina (planktonic foraminifer)
inferred← citeshttps://doi.org/10.1515/bot.2008.060openalex-snapshot
The origin and spread of eukaryotic photosynthesis: evolving views in light of genomics
inferred← citeshttps://doi.org/10.1525/bio.2009.59.6.5openalex-snapshot
Molecular Data Are Transforming Hypotheses on the Origin and Diversification of Eukaryotes
inferred← citeshttps://doi.org/10.1534/g3.116.028878openalex-snapshot
Whole Genome Sequencing Identifies a Novel Factor Required for Secretory Granule Maturation in Tetrahymena thermophila
inferred← citeshttps://doi.org/10.17077/etd.6xg42cj3openalex-snapshot
The evolutionary history of meiotic genes
inferred← citeshttps://doi.org/10.3109/09687688.2010.521201openalex-snapshot
Patterns and processes in the evolution of the eukaryotic endomembrane system
inferred← citeshttps://doi.org/10.3389/fgene.2016.00022openalex-snapshot
Population Genomics and the Statistical Values of Race: An Interdisciplinary Perspective on the Biological Classification of Human Populations and Implications for Clinical Genetic Epidemiological Research
inferred← citeshttps://doi.org/10.3390/ijms27041717openalex-snapshot
Wheat Allergy in the Era of Precision Medicine: From Novel Molecular Markers to New Therapeutic Perspectives
inferred← citeshttps://doi.org/10.4161/sgtp.2.4.16706openalex-snapshot
A Rab-based view of membrane traffic in the ciliateTetrahymena thermophila
inferred← citeshttps://doi.org/10.4467/16890027ap.12.024.0784openalex-snapshot
Morphological Description of Telaepolella tubasferens n. g., n. sp., Isolate ATCC© 50593™, a Filose Amoeba in the Gracilipodida, Amoebozoa
inferred← citeshttps://doi.org/10.5539/ijb.v6n2p77openalex-snapshot
The Power-Law-Tail in the Distribution of the Nucleotides of Genomes Was Related to the Complexity of Organism: New Classification of Organisms
inferred← citeshttps://doi.org/10.5586/asbp.2015.020openalex-snapshot
The Glaucophyta: the blue-green plants in a nutshell
inferred← citeshttps://doi.org/10.5772/28788openalex-snapshot
Traveller’s Diarrhoea and Intestinal Protozoal Diarrhoeal Disease
inferred← citeshttps://doi.org/10.70675/76910e99z19a8z4804z8037z63f214c6e5a9openalex-snapshot
Étude de l’origine des eucaryotes par la phylogénie moléculaire
inferred← citeshttps://doi.org/10.70675/e6bbdf22z0619z4992zad00za3a15f1cb96eopenalex-snapshot
Diversité et structure spatio-temporelle des communautés protistes dans deux systèmes côtiers aux conditions trophiques contrastées : cas de la Manche Orientale et la Méditerranée Occidentale
inferred← citeshttps://doi.org/10.70675/f6a87363z8acaz4487z93e0z57bc870cf584openalex-snapshot
Phylogénomique des structures multiprotéiques eucaryotes impliquées dans le cycle cellulaire et contribution à la phylogénie des eucaryotes.
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