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Phylum-Level Conservation of Regulatory Information in Nematodes despite Extensive Non-coding Sequence Divergence
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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GABA‐immunoreactive neurons in the nematode Ascaris
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Regulation of the mec‐3 gene by the C.elegans homeoproteins UNC‐86 and MEC‐3.
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Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?
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Regulative Development in a Nematode Embryo: A Hierarchy of Cell Fate Transformations
inferredcites →https://doi.org/10.1016/0092-8674(88)90174-2openalex-snapshot
mec-3, a homeobox-containing gene that specifies differentiation of the touch receptor neurons in C. elegans
inferredcites →https://doi.org/10.1016/0309-1651(90)90792-wopenalex-snapshot
The development of marine hematoda enoplus brevis
inferredcites →https://doi.org/10.1016/j.cell.2008.06.030openalex-snapshot
Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution
inferredcites →https://doi.org/10.1016/j.cub.2005.08.046openalex-snapshot
Urochordate βγ-Crystallin and the Evolutionary Origin of the Vertebrate Eye Lens
inferredcites →https://doi.org/10.1016/j.cub.2007.09.035openalex-snapshot
A rationale for the enhanceosome and other evolutionarily constrained enhancers
inferredcites →https://doi.org/10.1016/j.cub.2007.10.061openalex-snapshot
Trends, Stasis, and Drift in the Evolution of Nematode Vulva Development
inferredcites →https://doi.org/10.1016/j.cub.2011.05.056openalex-snapshot
Rapid Evolutionary Rewiring of a Structurally Constrained Eye Enhancer
inferredcites →https://doi.org/10.1016/j.cub.2013.01.026openalex-snapshot
Molecular Timetrees Reveal a Cambrian Colonization of Land and a New Scenario for Ecdysozoan Evolution
inferredcites →https://doi.org/10.1016/j.devcel.2006.02.002openalex-snapshot
Genetic Flexibility in the Convergent Evolution of Hermaphroditism in Caenorhabditis Nematodes
inferredcites →https://doi.org/10.1016/j.molbiopara.2003.10.012openalex-snapshot
Ectopic expression of a Haemonchus contortus GATA transcription factor in Caenorhabditis elegans reveals conserved function in spite of extensive sequence divergence
inferredcites →https://doi.org/10.1016/j.ydbio.2004.08.021openalex-snapshot
Different combinations of gap repressors for common stripes in Anopheles and Drosophila embryos
inferredcites →https://doi.org/10.1016/j.ydbio.2005.03.004openalex-snapshot
An ancient transcriptional regulatory linkage
inferredcites →https://doi.org/10.1016/j.ydbio.2008.10.044openalex-snapshot
Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes
inferredcites →https://doi.org/10.1016/j.ydbio.2008.12.020openalex-snapshot
Design flexibility in cis-regulatory control of gene expression: Synthetic and comparative evidence
inferredcites →https://doi.org/10.1016/j.ydbio.2011.12.011openalex-snapshot
Ancestral and conserved cis-regulatory architectures in developmental control genes
inferredcites →https://doi.org/10.1016/s0012-1606(98)80006-7openalex-snapshot
The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine
inferredcites →https://doi.org/10.1016/s0035-9203(02)90224-5openalex-snapshot
The Brugia malayi genome project: expressed sequence tags and gene discovery
inferredcites →https://doi.org/10.1017/s003118200400647xopenalex-snapshot
The use ofCaenorhabditis elegansin parasitic nematode research
inferredcites →https://doi.org/10.1038/361490a0openalex-snapshot
The zootype and the phylotypic stage
inferredcites →https://doi.org/10.1038/364334a0openalex-snapshot
Genes required for GABA function in Caenorhabditis elegans
inferredcites →https://doi.org/10.1038/376249a0openalex-snapshot
A conserved system for dorsal-ventral patterning in insects and vertebrates involving sog and chordin
inferredcites →https://doi.org/10.1038/39908openalex-snapshot
Identification and characterization of the vesicular GABA transporter
inferredcites →https://doi.org/10.1038/nbt.1482openalex-snapshot
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
inferredcites →https://doi.org/10.1038/ng.2713openalex-snapshot
Massively parallel decoding of mammalian regulatory sequences supports a flexible organizational model
inferredcites →https://doi.org/10.1038/ng.769openalex-snapshot
The draft genome of the parasitic nematode Trichinella spiralis
inferredcites →https://doi.org/10.1038/ng1301openalex-snapshot
Evolutionary innovation of the excretory system in Caenorhabditis elegans
inferredcites →https://doi.org/10.1046/j.1525-142x.2001.003002109.xopenalex-snapshot
Developmental system drift and flexibility in evolutionary trajectories
inferredcites →https://doi.org/10.1073/pnas.0400611101openalex-snapshot
Coordinate enhancers share common organizational features in the Drosophila genome
inferredcites →https://doi.org/10.1073/pnas.0709994104openalex-snapshot
Evolutionary plasticity of developmental gene regulatory network architecture
inferredcites →https://doi.org/10.1073/pnas.0805946105openalex-snapshot
Sequence and genetic map of Meloidogyne hapla : A compact nematode genome for plant parasitism
inferredcites →https://doi.org/10.1073/pnas.1109037108openalex-snapshot
Transphyletic conservation of developmental regulatory state in animal evolution
inferredcites →https://doi.org/10.1073/pnas.2235868100openalex-snapshot
Developmental gene regulatory network architecture across 500 million years of echinoderm evolution
inferredcites →https://doi.org/10.1073/pnas.92.5.1684openalex-snapshot
Detecting conserved regulatory elements with the model genome of the Japanese puffer fish, Fugu rubripes.
inferredcites →https://doi.org/10.1073/pnas.94.10.5162openalex-snapshot
The origin and evolution of animal appendages
inferredcites →https://doi.org/10.1074/jbc.270.24.14666openalex-snapshot
elt-2, a Second GATA Factor from the Nematode Caenorhabditis elegans
inferredcites →https://doi.org/10.1093/jhered/esi027openalex-snapshot
New Perspectives on Eye Development and the Evolution of Eyes and Photoreceptors
inferredcites →https://doi.org/10.1093/molbev/msg140openalex-snapshot
The Evolution of Transcriptional Regulation in Eukaryotes
inferredcites →https://doi.org/10.1093/nar/22.9.1762openalex-snapshot
pha-1, a selectable marker for gene transfer inC.elegans
inferredcites →https://doi.org/10.1093/nar/gkp619openalex-snapshot
Organization of developmental enhancers in the Drosophila embryo
inferredcites →https://doi.org/10.1098/rstb.2001.0977openalex-snapshot
On the evolution of early development in the Nematoda
inferredcites →https://doi.org/10.1101/gad.1481706openalex-snapshot
Defining the transcriptional redundancy of early bodywall muscle development in C. elegans : evidence for a unified theory of animal muscle development
inferredcites →https://doi.org/10.1101/gad.2.1.1openalex-snapshot
Spatially deranged though temporally correct expression of Strongylocentrotus purpuratus actin gene fusion in transgenic embryos of a different sea urchin family.
inferredcites →https://doi.org/10.1101/gad.3.12a.1823openalex-snapshot
The mec-3 gene of Caenorhabditis elegans requires its own product for maintained expression and is expressed in three neuronal cell types.
inferredcites →https://doi.org/10.1101/gr.119016.110openalex-snapshot
Genome-wide identification of conserved regulatory function in diverged sequences
inferredcites →https://doi.org/10.1101/gr.6929408openalex-snapshot
Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
inferredcites →https://doi.org/10.1101/gr.7205808openalex-snapshot
Qualifying the relationship between sequence conservation and molecular function
inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb00544.xopenalex-snapshot
PERSPECTIVE: EVOLUTIONARY DEVELOPMENTAL BIOLOGY AND THE PROBLEM OF VARIATION
inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00450.xopenalex-snapshot
THE LOCI OF EVOLUTION: HOW PREDICTABLE IS GENETIC EVOLUTION?
inferredcites →https://doi.org/10.1126/science.1124070openalex-snapshot
Conservation of RET Regulatory Function from Human to Zebrafish Without Sequence Similarity
inferredcites →https://doi.org/10.1126/science.1145406openalex-snapshot
Draft Genome of the Filarial Nematode Parasite Brugia malayi
inferredcites →https://doi.org/10.1126/science.1145893openalex-snapshot
Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression
inferredcites →https://doi.org/10.1126/science.282.5396.2012openalex-snapshot
Genome Sequence of the Nematode C. elegans : A Platform for Investigating Biology
inferredcites →https://doi.org/10.1126/science.8103239openalex-snapshot
Cooperative Interactions Between the Caenorhabditis elegans Homeoproteins UNC-86 and MEC-3
inferredcites →https://doi.org/10.1186/1471-2164-7-10openalex-snapshot
A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation
inferredcites →https://doi.org/10.1186/1741-7007-8-127openalex-snapshot
An arthropod cis-regulatory element functioning in sensory organ precursor development dates back to the Cambrian
inferredcites →https://doi.org/10.1186/2041-9139-2-18openalex-snapshot
Evolution of embryonic development in nematodes
inferredcites →https://doi.org/10.1242/dev.00711openalex-snapshot
Functional tests of enhancer conservation between distantly related species
inferredcites →https://doi.org/10.1242/dev.00877openalex-snapshot
Characterization of the pufferfishOtx2cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification
inferredcites →https://doi.org/10.1242/dev.01390openalex-snapshot
A phylogenetically conserved cis-regulatory module in theMsx2promoter is sufficient for BMP-dependent transcription in murine andDrosophilaembryos
inferredcites →https://doi.org/10.1242/dev.01707openalex-snapshot
Making very similar embryos with divergent genomes: conservation of regulatory mechanisms of Otx between the ascidians Halocynthia roretzi and Ciona intestinalis
inferredcites →https://doi.org/10.1242/dev.01738openalex-snapshot
Functional analysis of the chicken δ1-crystallin enhancer activity in Drosophila reveals remarkable evolutionary conservation between chicken and fly
inferredcites →https://doi.org/10.1242/dev.084459openalex-snapshot
Conserved non-coding elements and cis regulation: actions speak louder than words
inferredcites →https://doi.org/10.1242/dev.124.10.1851openalex-snapshot
The hardwiring of development: organization and function of genomic regulatory systems
inferredcites →https://doi.org/10.1242/dev.125.1.143openalex-snapshot
Cell lineage in marine nematode Enoplus brevis
inferredcites →https://doi.org/10.1242/dev.126.17.3725openalex-snapshot
Evolutionary alterations of the minimal promoter for notochord-specific Brachyury expression in ascidian embryos
inferredcites →https://doi.org/10.1242/dev.126.2.383openalex-snapshot
Regulation of Pax6 expression is conserved between mice and flies
inferredcites →https://doi.org/10.1242/dev.126.21.4737openalex-snapshot
Patterning the ascidian nervous system: structure, expression and transgenic analysis of theCiHox3gene
inferredcites →https://doi.org/10.1371/journal.pbio.0000045openalex-snapshot
The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
inferredcites →https://doi.org/10.1371/journal.pbio.0060263openalex-snapshot
Evolution Acts on Enhancer Organization to Fine-Tune Gradient Threshold Readouts
inferredcites →https://doi.org/10.1371/journal.pbio.1001050openalex-snapshot
Nematodes: The Worm and Its Relatives
inferredcites →https://doi.org/10.1371/journal.pgen.1002053openalex-snapshot
Does Positive Selection Drive Transcription Factor Binding Site Turnover? A Test with Drosophila Cis-Regulatory Modules
inferredcites →https://doi.org/10.1371/journal.pgen.1002095openalex-snapshot
Distinct Functional Constraints Partition Sequence Conservation in a cis-Regulatory Element
inferredcites →https://doi.org/10.1371/journal.pgen.1002432openalex-snapshot
Tempo and Mode in Evolution of Transcriptional Regulation
inferredcites →https://doi.org/10.1371/journal.pgen.1002852openalex-snapshot
Human Developmental Enhancers Conserved between Deuterostomes and Protostomes
inferredcites →https://doi.org/10.1371/journal.pgen.1002961openalex-snapshot
Coevolution within and between Regulatory Loci Can Preserve Promoter Function Despite Evolutionary Rate Acceleration
inferredcites →https://doi.org/10.1371/journal.pgen.1004077openalex-snapshot
Comparative RNAi Screens in C. elegans and C. briggsae Reveal the Impact of Developmental System Drift on Gene Function
inferredcites →https://doi.org/10.1371/journal.pgen.1004435openalex-snapshot
Pervasive Divergence of Transcriptional Gene Regulation in Caenorhabditis Nematodes
inferredcites →https://doi.org/10.1371/journal.pone.0022677openalex-snapshot
Functional Conservation of Cis-Regulatory Elements of Heat-Shock Genes over Long Evolutionary Distances
inferredcites →https://doi.org/10.1523/jneurosci.07-01-00223.1987openalex-snapshot
GABA-immunoreactivity in inhibitory motor neurons of the nematode Ascaris
inferredcites →https://doi.org/10.1523/jneurosci.19-02-00539.1999openalex-snapshot
TheCaenorhabditis elegansGeneunc-25Encodes Glutamic Acid Decarboxylase and Is Required for Synaptic Transmission But Not Synaptic Development
inferredcites →https://doi.org/10.1523/jneurosci.19-15-06225.1999openalex-snapshot
Coordinated Transcriptional Regulation of theunc-25Glutamic Acid Decarboxylase and theunc-47GABA Vesicular Transporter by theCaenorhabditis elegansUNC-30 Homeodomain Protein
inferredcites →https://doi.org/10.1534/genetics.110.121590openalex-snapshot
Changes in Selective Effects Over Time Facilitate Turnover of Enhancer Sequences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4755772openalex-extracted
Cross-Validation of Conserved Osteoblast-Specific Enhancers Illuminates Bone Diseases and Early Skeletal Evolution
inferred← citeshttps://doi.org/10.1007/s00427-016-0558-zopenalex-snapshot
Molecular evolution of the multiple calmodulin-like cal genes in C. elegans and in nematodes
inferred← citeshttps://doi.org/10.1016/bs.adgen.2016.08.004openalex-snapshot
The Functionality and Evolution of Eukaryotic Transcriptional Enhancers
inferred← citeshttps://doi.org/10.1016/j.cdev.2024.203924openalex-snapshot
Xenopus tropicalis osteoblast-specific open chromatin regions reveal promoters and enhancers involved in human skeletal phenotypes and shed light on early vertebrate evolution
inferred← citeshttps://doi.org/10.1016/j.gene.2018.12.069openalex-snapshot
Intermediate filament (IF) proteins IFA-1 and IFB-1 represent a basic heteropolymeric IF cytoskeleton of nematodes: A molecular phylogeny of nematode IFs
inferred← citeshttps://doi.org/10.1101/2020.03.06.980219openalex-snapshot
Establishment of a marine nematode model for animal functional genomics, environmental adaptation and developmental evolution
inferred← citeshttps://doi.org/10.1101/2021.10.26.465928openalex-snapshot
Transcriptomic profiling of sex-specific olfactory neurons reveals subset-specific receptor expression in Caenorhabditis elegans
inferred← citeshttps://doi.org/10.1101/2023.08.30.555543openalex-snapshot
Architecture and evolutionary conservation of Xenopus tropicalis osteoblast-specific regulatory regions shed light on bone diseases and early skeletal evolution
inferred← citeshttps://doi.org/10.1371/journal.ppat.1007198openalex-snapshot
Immobility in the sedentary plant-parasitic nematode H. glycines is associated with remodeling of neuromuscular tissue
inferred← citeshttps://doi.org/10.1534/genetics.118.300243openalex-snapshot
From “the Worm” to “the Worms” and Back Again: The Evolutionary Developmental Biology of Nematodes
inferred← citeshttps://doi.org/10.3389/fpls.2015.01135openalex-snapshot
Interspecies Gene Transfer as a Method for Understanding the Genetic Basis for Evolutionary Change: Progress, Pitfalls, and Prospects
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