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Architecture of the Escherichia coli nucleoid

https://doi.org/10.1371/journal.pgen.1008456

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Outgoing claims: the papers this work cites, builds on, or argues with.

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DNA condensation by multivalent cations

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Are SMC Complexes Loop Extruding Factors? Linking Theory With Fact

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E.coli MukB protein involved in chromosome partition forms a homodimer with a rod‐and‐hinge structure having DNA binding and ATP/GTP binding activities.

inferredcites →https://doi.org/10.1002/j.1460-2075.1994.tb06256.xopenalex-snapshot

The chromatin‐associated protein H‐NS alters DNA topology in vitro.

inferredcites →https://doi.org/10.1006/jmbi.1994.1563openalex-snapshot

DNA-binding Parameters of the HU Protein of Escherichia coli to Cruciform DNA

inferredcites →https://doi.org/10.1006/jmbi.1996.0068openalex-snapshot

Histone-like Protein HU and Bacterial DNA Topology: Suppression of an HU Deficiency by Gyrase Mutations

inferredcites →https://doi.org/10.1006/jmbi.1996.0086openalex-snapshot

Cross-talk Between Topoisomerase I and HU inEscherichia coli

inferredcites →https://doi.org/10.1006/jmbi.1996.0566openalex-snapshot

Systematic Mutational Analysis Revealing the Functional Domain Organization of Nucleoid Protein H-NS

inferredcites →https://doi.org/10.1006/jmbi.1997.1310openalex-snapshot

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

inferredcites →https://doi.org/10.1006/jmbi.1998.1834openalex-snapshot

DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmission

inferredcites →https://doi.org/10.1006/jmbi.1998.2256openalex-snapshot

A quantitative UV laser footprinting analysis of the interaction of IHF with specific binding sites: re-evaluation of the effective concentration of IHF in the cell

inferredcites →https://doi.org/10.1006/jmbi.1999.2631openalex-snapshot

Differential binding of the Escherichia coli HU, homodimeric forms and heterodimeric form to linear, gapped and cruciform DNA

inferredcites →https://doi.org/10.1007/bf00260482openalex-snapshot

Maintenance of plasmids in HU and 1HF mutants of Escherichia coli

inferredcites →https://doi.org/10.1007/bf00288323openalex-snapshot

Electron microscopy of membrane-associated folded chromosomes of Escherichia coli

inferredcites →https://doi.org/10.1007/s11427-015-4898-0openalex-snapshot

Growth phase dependent changes in the structure and protein composition of nucleoid in Escherichia coli

inferredcites →https://doi.org/10.1007/s12551-016-0205-yopenalex-snapshot

DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression

inferredcites →https://doi.org/10.1007/s12551-016-0238-2openalex-snapshot

DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression

inferredcites →https://doi.org/10.1016/0005-2787(78)90232-0openalex-snapshot

Specific association of two homologous DNA-binding proteins to the native 30-S ribosomal subunits of Escherichia coli

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A thermostable protein factor acting on in vitro DNA transcription

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Primary structures of two homologous ribosome‐associated DNA‐binding proteins of Escherichia coli

inferredcites →https://doi.org/10.1016/0022-2836(72)90342-7openalex-snapshot

On the structure of the folded chromosome of Escherichia coli

inferredcites →https://doi.org/10.1016/0022-2836(74)90576-2openalex-snapshot

Properties of a membrane-attached form of the folded chromosome of Escherichia coli

inferredcites →https://doi.org/10.1016/0022-2836(86)90405-5openalex-snapshot

Interaction of the Escherichia coli HU protein with DNA

inferredcites →https://doi.org/10.1016/0022-2836(87)90369-xopenalex-snapshot

Use of site-specific recombination as a probe of DNA structure and metabolism in vivo

inferredcites →https://doi.org/10.1016/0022-2836(92)90134-6openalex-snapshot

Crystal structure of the factor for inversion stimulation FIS at 2.0 Å resolution

inferredcites →https://doi.org/10.1016/0022-2836(92)90460-2openalex-snapshot

DNA topology-mediated regulation of transcription initiation from the tandem promoters of the ilvGMEDA operon of Escherichia coli

inferredcites →https://doi.org/10.1016/0092-8674(79)90152-1openalex-snapshot

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

inferredcites →https://doi.org/10.1016/0092-8674(80)90440-7openalex-snapshot

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: Analogous measurements in insect and human cells

inferredcites →https://doi.org/10.1016/0092-8674(84)90478-1openalex-snapshot

E. coli integration host factor binds to specific sites in DNA

inferredcites →https://doi.org/10.1016/0092-8674(90)90172-bopenalex-snapshot

New topoisomerase essential for chromosome segregation in E. coli

inferredcites →https://doi.org/10.1016/0378-1119(89)90175-3openalex-snapshot

Participation of hup gene product in replicative transposition of Mu phage in Escherichia coli

inferredcites →https://doi.org/10.1016/j.bpj.2015.08.016openalex-snapshot

H-NS Regulates Gene Expression and Compacts the Nucleoid: Insights from Single-Molecule Experiments

inferredcites →https://doi.org/10.1016/j.bpj.2016.11.938openalex-snapshot

Protein-Mediated Loops in Supercoiled DNA Create Large Topological Domains

inferredcites →https://doi.org/10.1016/j.ceb.2016.02.015openalex-snapshot

Bacterial chromatin: converging views at different scales

inferredcites →https://doi.org/10.1016/j.cell.2008.08.031openalex-snapshot

The MatP/matS Site-Specific System Organizes the Terminus Region of the E. coli Chromosome into a Macrodomain

inferredcites →https://doi.org/10.1016/j.cell.2008.10.050openalex-snapshot

Structural Studies of a Bacterial Condensin Complex Reveal ATP-Dependent Disruption of Intersubunit Interactions

inferredcites →https://doi.org/10.1016/j.cell.2013.04.006openalex-snapshot

Four-Dimensional Imaging of E. coli Nucleoid Organization and Dynamics in Living Cells

inferredcites →https://doi.org/10.1016/j.cell.2014.05.038openalex-snapshot

Mechanism of Transcriptional Bursting in Bacteria

inferredcites →https://doi.org/10.1016/j.cell.2017.12.027openalex-snapshot

Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins

inferredcites →https://doi.org/10.1016/j.celrep.2015.11.034openalex-snapshot

The Localization and Action of Topoisomerase IV in Escherichia coli Chromosome Segregation Is Coordinated by the SMC Complex, MukBEF

inferredcites →https://doi.org/10.1016/j.febslet.2015.08.044openalex-snapshot

Structural and functional diversity of Topologically Associating Domains

inferredcites →https://doi.org/10.1016/j.jmb.2006.09.043openalex-snapshot

Mechanism of Chromosome Compaction and Looping by the Escherichia coli Nucleoid Protein Fis

inferredcites →https://doi.org/10.1016/j.jmb.2006.10.024openalex-snapshot

Structure-based Analysis of HU–DNA Binding

inferredcites →https://doi.org/10.1016/j.jmb.2007.11.101openalex-snapshot

Functional Characterization of the Escherichia coli Fis–DNA Binding Sequence

inferredcites →https://doi.org/10.1016/j.jsb.2006.07.005openalex-snapshot

Coupling the distribution of RNA polymerase to global gene regulation and the dynamic structure of the bacterial nucleoid in Escherichia coli

inferredcites →https://doi.org/10.1016/j.mib.2014.10.001openalex-snapshot

The bacterial nucleoid: nature, dynamics and sister segregation

inferredcites →https://doi.org/10.1016/j.molcel.2005.04.012openalex-snapshot

SlmA, a Nucleoid-Associated, FtsZ Binding Protein Required for Blocking Septal Ring Assembly over Chromosomes in E. coli

inferredcites →https://doi.org/10.1016/j.molcel.2012.09.009openalex-snapshot

Molecular Basis for a Protein-Mediated DNA-Bridging Mechanism that Functions in Condensation of the E. coli Chromosome

inferredcites →https://doi.org/10.1016/s0006-3495(03)75051-6openalex-snapshot

Increased Bending Rigidity of Single DNA Molecules by H-NS, a Temperature and Osmolarity Sensor

inferredcites →https://doi.org/10.1016/s0021-9258(17)38239-xopenalex-snapshot

Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein.

inferredcites →https://doi.org/10.1016/s0021-9258(18)31453-4openalex-snapshot

Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU

inferredcites →https://doi.org/10.1016/s0021-9258(18)50059-4openalex-snapshot

Opening of the replication origin of Escherichia coli by DnaA protein with protein HU or IHF

inferredcites →https://doi.org/10.1016/s0021-9258(18)61121-4openalex-snapshot

DNA gyrase-catalyzed decatenation of multiply linked DNA dimers.

inferredcites →https://doi.org/10.1016/s0091-679x(08)00409-3openalex-snapshot

Chapter 9 Close-to-Native Ultrastructural Preservation by High Pressure Freezing

inferredcites →https://doi.org/10.1016/s0092-8674(00)81824-3openalex-snapshot

Crystal Structure of an IHF-DNA Complex: A Protein-Induced DNA U-Turn

inferredcites →https://doi.org/10.1016/s0092-8674(04)00044-3openalex-snapshot

The Nucleosome

inferredcites →https://doi.org/10.1016/s0092-8674(85)80058-1openalex-snapshot

G inversion in bacteriophage Mu DNA is stimulated by a site within the invertase gene and a host factor

inferredcites →https://doi.org/10.1016/s0092-8674(85)80059-3openalex-snapshot

Hin-mediated site-specific recombination requires two 26 by recombination sites and a 60 by recombinational enhancer

inferredcites →https://doi.org/10.1021/bi00040a020openalex-snapshot

The specific binding of Escherichia coli integration host factor involves both major and minor grooves of DNA

inferredcites →https://doi.org/10.1038/349178a0openalex-snapshot

Three-dimensional structure of the E. coli DMA-binding protein FIS

inferredcites →https://doi.org/10.1038/38444openalex-snapshot

Crystal structure of the nucleosome core particle at 2.8 Å resolution

inferredcites →https://doi.org/10.1038/emboj.2012.128openalex-snapshot

A MatP–divisome interaction coordinates chromosome segregation with cell division in E. coli

inferredcites →https://doi.org/10.1038/emboj.2013.218openalex-snapshot

Structural basis for the MukB‐topoisomerase IV interaction and its functional implications in vivo

inferredcites →https://doi.org/10.1038/embor.2009.232openalex-snapshot

Coordination of genomic structure and transcription by the main bacterial nucleoid‐associated protein HU

inferredcites →https://doi.org/10.1038/nature05283openalex-snapshot

Bacterial chromatin organization by H-NS protein unravelled using dual DNA manipulation

inferredcites →https://doi.org/10.1038/ncomms10466openalex-snapshot

MatP regulates the coordinated action of topoisomerase IV and MukBEF in chromosome segregation

inferredcites →https://doi.org/10.1038/ncomms11055openalex-snapshot

Genome scale patterns of supercoiling in a bacterial chromosome

inferredcites →https://doi.org/10.1038/ncomms12107openalex-snapshot

Bacterial partition complexes segregate within the volume of the nucleoid

inferredcites →https://doi.org/10.1038/nmeth.3623openalex-snapshot

Focused ion beams in biology

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SMC complexes: from DNA to chromosomes

inferredcites →https://doi.org/10.1038/nsmb1233openalex-snapshot

H-NS cooperative binding to high-affinity sites in a regulatory element results in transcriptional silencing

inferredcites →https://doi.org/10.1038/nsmb848openalex-snapshot

The dynamic response of upstream DNA to transcription-generated torsional stress

inferredcites →https://doi.org/10.1038/s42003-018-0248-7openalex-snapshot

DNA-binding directs the localization of a membrane-integrated receptor of the ToxR family

inferredcites →https://doi.org/10.1038/sj.emboj.7600434openalex-snapshot

Macrodomain organization of the Escherichia coli chromosome

inferredcites →https://doi.org/10.1038/sj.emboj.7600680openalex-snapshot

The MukF subunit of Escherichia coli condensin: architecture and functional relationship to kleisins

inferredcites →https://doi.org/10.1038/srep00509openalex-snapshot

Nucleoprotein filament formation is the structural basis for bacterial protein H-NS gene silencing

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The transcriptional regulator GalR self-assembles to form highly regular tubular structures

inferredcites →https://doi.org/10.1038/srep31512openalex-snapshot

Genes on a Wire: The Nucleoid-Associated Protein HU Insulates Transcription Units in Escherichia coli

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Histone‐like protein HU as a specific transcriptional regulator: co‐factor role in repression of gal transcription by GAL repressor

inferredcites →https://doi.org/10.1046/j.1365-2958.1999.01656.xopenalex-snapshot

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

inferredcites →https://doi.org/10.1046/j.1365-2958.2001.02305.xopenalex-snapshot

The Escherichia coli histone‐like protein HU regulates rpoS translation

inferredcites →https://doi.org/10.1046/j.1365-2958.2001.02706.xopenalex-snapshot

A molecular mechanism for the repression of transcription by the H‐NS protein

inferredcites →https://doi.org/10.1046/j.1365-2958.2003.03855.xopenalex-snapshot

Nucleoid restructuring in stationary‐state bacteria

inferredcites →https://doi.org/10.1073/pnas.030528397openalex-snapshot

Suppression of chromosome segregation defects of Escherichia coli muk mutants by mutations in topoisomerase I

inferredcites →https://doi.org/10.1073/pnas.0307550101openalex-snapshot

Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome

inferredcites →https://doi.org/10.1073/pnas.0308230101openalex-snapshot

Dual architectural roles of HU: Formation of flexible hinges and rigid filaments

inferredcites →https://doi.org/10.1073/pnas.040576797openalex-snapshot

Closing the ring: Links between SMC proteins and chromosome partitioning, condensation, and supercoiling

inferredcites →https://doi.org/10.1073/pnas.0508032102openalex-snapshot

Nucleoid remodeling by an altered HU protein: Reorganization of the transcription program

inferredcites →https://doi.org/10.1073/pnas.0611686104openalex-snapshot

Spiral structure of Escherichia coli HUαβ provides foundation for DNA supercoiling

inferredcites →https://doi.org/10.1073/pnas.1008678107openalex-snapshot

Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction

inferredcites →https://doi.org/10.1073/pnas.1109479109openalex-snapshot

Membrane protein expression triggers chromosomal locus repositioning in bacteria

inferredcites →https://doi.org/10.1073/pnas.1109854108openalex-snapshot

Dividing a supercoiled DNA molecule into two independent topological domains

inferredcites →https://doi.org/10.1073/pnas.1208595109openalex-snapshot

Galactose repressor mediated intersegmental chromosomal connections in Escherichia coli

inferredcites →https://doi.org/10.1073/pnas.1711285114openalex-snapshot

DNA–RNA interactions are critical for chromosome condensation in Escherichia coli

inferredcites →https://doi.org/10.1073/pnas.1716721114openalex-snapshot

Charged residues in the H-NS linker drive DNA binding and gene silencing in single cells

inferredcites →https://doi.org/10.1073/pnas.68.1.6openalex-snapshot

The Folded Genome of Escherichia coli Isolated in a Protein-DNA-RNA Complex

inferredcites →https://doi.org/10.1073/pnas.69.12.3643openalex-snapshot

Two Heat-Resistant, Low Molecular Weight Proteins from Escherichia coli That Stimulate DNA-Directed RNA Synthesis

inferredcites →https://doi.org/10.1073/pnas.72.9.3428openalex-snapshot

Characterization of a novel, low-molecular-weight DNA-binding protein from Escherichia coli.

inferredcites →https://doi.org/10.1073/pnas.73.11.3872openalex-snapshot

DNA gyrase: an enzyme that introduces superhelical turns into DNA.

inferredcites →https://doi.org/10.1073/pnas.73.2.563openalex-snapshot

Visualization of prokaryotic DNA in a regularly condensed chromatin-like fiber.

inferredcites →https://doi.org/10.1073/pnas.78.1.224openalex-snapshot

Chromosomes in living Escherichia coli cells are segregated into domains of supercoiling.

inferredcites →https://doi.org/10.1073/pnas.84.20.7024openalex-snapshot

Supercoiling of the DNA template during transcription.

inferredcites →https://doi.org/10.1073/pnas.93.3.1173openalex-snapshot

Transcriptional activation by protein-induced DNA bending: evidence for a DNA structural transmission model.

inferredcites →https://doi.org/10.1074/jbc.270.15.8744openalex-snapshot

DNA Looping by Saccharomyces cerevisiae High Mobility Group Proteins NHP6A/B

inferredcites →https://doi.org/10.1074/jbc.270.17.10291openalex-snapshot

HU Protein of Escherichia coli Binds Specifically to DNA That Contains Single-strand Breaks or Gaps

inferredcites →https://doi.org/10.1074/jbc.274.46.33105openalex-snapshot

Twelve Species of the Nucleoid-associated Protein from Escherichia coli

inferredcites →https://doi.org/10.1074/jbc.275.11.8103openalex-snapshot

Roles of Topoisomerases in Maintaining Steady-state DNA Supercoiling in Escherichia coli

inferredcites →https://doi.org/10.1074/jbc.m110.164962openalex-snapshot

Salmonella enterica Response Regulator SsrB Relieves H-NS Silencing by Displacing H-NS Bound in Polymerization Mode and Directly Activates Transcription

inferredcites →https://doi.org/10.1074/jbc.m117.803312openalex-snapshot

The bacterial condensin MukB compacts DNA by sequestering supercoils and stabilizing topologically isolated loops

inferredcites →https://doi.org/10.1074/jbc.m201978200openalex-snapshot

The Bacterial Histone-like Protein HU Specifically Recognizes Similar Structures in All Nucleic Acids

inferredcites →https://doi.org/10.1074/jbc.m504754200openalex-snapshot

DNA Reshaping by MukB RIGHT-HANDED KNOTTING, LEFT-HANDED SUPERCOILING

inferredcites →https://doi.org/10.1074/jbc.m605576200openalex-snapshot

Right-handed DNA Supercoiling by an Octameric Form of Histone-like Protein HU

inferredcites →https://doi.org/10.1074/jbc.m606723200openalex-snapshot

Antagonistic Interactions of Kleisins and DNA with Bacterial Condensin MukB

inferredcites →https://doi.org/10.1083/jcb.142.6.1595openalex-snapshot

The Symmetrical Structure of Structural Maintenance of Chromosomes (SMC) and MukB Proteins: Long, Antiparallel Coiled Coils, Folded at a Flexible Hinge

inferredcites →https://doi.org/10.1091/mbc.e04-12-1096openalex-snapshot

Visualization of Vacuolar Acidification-induced Transcription of Genes of Pathogens inside Macrophages

inferredcites →https://doi.org/10.1093/emboj/18.21.5873openalex-snapshot

Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli

inferredcites →https://doi.org/10.1093/emboj/19.23.6527openalex-snapshot

The histone‐like protein HU binds specifically to DNA recombination and repair intermediates

inferredcites →https://doi.org/10.1093/emboj/cdg351openalex-snapshot

Flexible DNA bending in HU–DNA cocrystal structures

inferredcites →https://doi.org/10.1093/nar/20.7.1553openalex-snapshot

Preferential binding ofE.colihistone-like protein HUα to negatively supercoiled DNA

inferredcites →https://doi.org/10.1093/nar/25.4.873openalex-snapshot

Atomic force microscopic demonstration of DNA looping by GalR and HU

inferredcites →https://doi.org/10.1093/nar/28.18.3504openalex-snapshot

H-NS mediated compaction of DNA visualised by atomic force microscopy

inferredcites →https://doi.org/10.1093/nar/29.24.5107openalex-snapshot

An architectural role of the Escherichia coli chromatin protein FIS in organising DNA

inferredcites →https://doi.org/10.1093/nar/4.8.2725openalex-snapshot

Histone-like proteins in the purified Escherichia coli deoxyribonucleoprotein

inferredcites →https://doi.org/10.1093/nar/5.10.3811openalex-snapshot

Escherichia coli DNA topoisomerase I catalyzed linking of single-stranded rings of complementary base sequences

inferredcites →https://doi.org/10.1093/nar/gkm712openalex-snapshot

High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes

inferredcites →https://doi.org/10.1093/nar/gkq934openalex-snapshot

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

inferredcites →https://doi.org/10.1093/nar/gkr1236openalex-snapshot

Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12

inferredcites →https://doi.org/10.1093/nar/gkt593openalex-snapshot

Time-dependent bending rigidity and helical twist of DNA by rearrangement of bound HU protein

inferredcites →https://doi.org/10.1093/nar/gky153openalex-snapshot

Protein-mediated loops in supercoiled DNA create large topological domains

inferredcites →https://doi.org/10.1093/nar/gky826openalex-snapshot

A single molecule analysis of H-NS uncouples DNA binding affinity from DNA specificity

inferredcites →https://doi.org/10.1093/oso/9780198567097.001.0001openalex-snapshot

DNA Topology

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An Escherichia coli Protein That Preferentially Binds to Sharply Curved DNA1

inferredcites →https://doi.org/10.1101/gad.12.7.1036openalex-snapshot

Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning

inferredcites →https://doi.org/10.1101/gad.1207504openalex-snapshot

Topological domain structure of the Escherichia coli chromosome

inferredcites →https://doi.org/10.1101/gad.14.2.212openalex-snapshot

Dynamic organization of chromosomal DNA in Escherichia coli

inferredcites →https://doi.org/10.1101/gad.1883510openalex-snapshot

A divalent switch drives H-NS/DNA-binding conformations between stiffening and bridging modes

inferredcites →https://doi.org/10.1101/gad.1900610openalex-snapshot

The shape of the DNA minor groove directs binding by the DNA-bending protein Fis

inferredcites →https://doi.org/10.1101/gad.265876.115openalex-snapshot

Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis

inferredcites →https://doi.org/10.1101/gad.290312.116openalex-snapshot

Colocalization of distant chromosomal loci in space in E. coli: a bacterial nucleolus

inferredcites →https://doi.org/10.1101/gad.6.12b.2646openalex-snapshot

A novel DNA-binding protein with regulatory and protective roles in starved Escherichia coli.

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Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts

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RNA Molecules Bound to the Folded Bacterial Genome Stabilize DNA Folds and Segregate Domains of Supercoiling

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Escherichia coli Type-1 Topoisomerases: Identification, Mechanism, and Role in Recombination

inferredcites →https://doi.org/10.1103/physrevlett.95.208101openalex-snapshot

Low-Force DNA Condensation and Discontinuous High-Force Decondensation Reveal a Loop-Stabilizing Function of the Protein Fis

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Transcription‐coupled nucleoid architecture in bacteria

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Proteins from the prokaryotic nucleoid: primary and quaternary structure of the 15‐kD Escherichia coli DNA binding protein H‐NS

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Protein HU binds specifically to kinked DNA

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The galactose regulon of Escherichia coli

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Topological insulators inhibit diffusion of transcription‐induced positive supercoils in the chromosome of Escherichia coli

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Spatial arrangement and macrodomain organization of bacterial chromosomes

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The Escherichia coli baby cell column: a novel cell synchronization method provides new insight into the bacterial cell cycle

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Organization of supercoil domains and their reorganization by transcription

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DNA topology of highly transcribed operons in Salmonella enterica serovar Typhimurium

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Physico‐chemical Properties of a DNA Binding Protein: Escherichia coli Factor H1

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Variation of the folding and dynamics of the E scherichia coli chromosome with growth conditions

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HU multimerization shift controls nucleoid compaction

inferredcites →https://doi.org/10.1126/science.1067799openalex-snapshot

Capturing Chromosome Conformation

inferredcites →https://doi.org/10.1126/science.1181369openalex-snapshot

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

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In Vivo Architecture and Action of Bacterial Structural Maintenance of Chromosome Proteins

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High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome

inferredcites →https://doi.org/10.1126/science.183.4122.330openalex-snapshot

Spheroid Chromatin Units (ν Bodies)

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ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells

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The DNA-Binding Protein from Starved Cells (Dps) Utilizes Dual Functions To Defend Cells against Multiple Stresses

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The Escherichia coli SMC Complex, MukBEF, Shapes Nucleoid Organization Independently of DNA Replication

inferredcites →https://doi.org/10.1128/jb.00961-12openalex-snapshot

Noncoding RNAs Binding to the Nucleoid Protein HU in Escherichia coli

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Genetic analysis of mutations that compensate for loss of Escherichia coli DNA topoisomerase I

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Physical mapping of repetitive extragenic palindromic sequences in Escherichia coli and phylogenetic distribution among Escherichia coli strains and other enteric bacteria

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Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

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Growth phase variation of integration host factor level in Escherichia coli

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Surveying a supercoil domain by using the gamma delta resolution system in Salmonella typhimurium

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Growth Phase-Dependent Variation in Protein Composition of the Escherichia coli Nucleoid

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Mutants Suppressing Novobiocin Hypersensitivity of amukBNull Mutation

inferredcites →https://doi.org/10.1128/mbio.00182-11openalex-snapshot

Conversion of Commensal Escherichia coli K-12 to an Invasive Form via Expression of a Mutant Histone-Like Protein

inferredcites →https://doi.org/10.1128/mbio.00998-15openalex-snapshot

A New Noncoding RNA Arranges Bacterial Chromosome Organization

inferredcites →https://doi.org/10.1128/mbio.01001-13openalex-snapshot

The SMC Complex MukBEF Recruits Topoisomerase IV to the Origin of Replication Region in Live Escherichia coli

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Chromosome-Membrane Interactions in Bacteria

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DNA Topoisomerases: Structure, Function, and Mechanism

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Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

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DNA Structure and Function

inferredcites →https://doi.org/10.1371/journal.pgen.1006758openalex-snapshot

Long range chromosome organization in Escherichia coli: The position of the replication origin defines the non-structured regions and the Right and Left macrodomains

inferredcites →https://doi.org/10.1371/journal.pone.0049885openalex-snapshot

Physical Organization of DNA by Multiple Non-Specific DNA-Binding Modes of Integration Host Factor (IHF)

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DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis

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A Guide to Magnetic Tweezers and Their Applications

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DNA structure and function

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Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity

inferredcites →https://doi.org/10.7554/elife.31522openalex-snapshot

MukB ATPases are regulated independently by the N- and C-terminal domains of MukF kleisin

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1093/nar/gkac865openalex-snapshot

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inferred← citeshttps://doi.org/10.1093/nar/gkag729openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2021.06.17.448862openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2023.09.21.558872openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2023.10.18.562934openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2024.01.17.576117openalex-snapshot

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inferred← citeshttps://doi.org/10.1101/2024.06.16.599206openalex-snapshot

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inferred← citeshttps://doi.org/10.1103/physreve.109.024409openalex-snapshot

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inferred← citeshttps://doi.org/10.1103/physrevlett.130.058203openalex-snapshot

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inferred← citeshttps://doi.org/10.1103/prxlife.3.013014openalex-snapshot

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inferred← citeshttps://doi.org/10.1111/1348-0421.13027openalex-snapshot

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inferred← citeshttps://doi.org/10.1111/1462-2920.15562openalex-snapshot

Nucleoid‐associated Rok differentially affects chromosomal transformation on Bacillus subtilis recombination‐deficient cells

inferred← citeshttps://doi.org/10.1111/mmi.14572openalex-snapshot

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inferred← citeshttps://doi.org/10.1111/mmi.15033openalex-snapshot

Non‐specific and specific DNA binding modes of bacterial histone, HU , separately regulate distinct physiological processes through different mechanisms

inferred← citeshttps://doi.org/10.1111/mmi.15328openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/aem.00108-24openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/ecosalplus.esp-0001-2022openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/ecosalplus.esp-0002-2024openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/jb.00211-23openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/jb.00328-25openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.01151-21openalex-snapshot

Chromosomal Location Determines the Rate of Intrachromosomal Homologous Recombination in Salmonella

inferred← citeshttps://doi.org/10.1128/mbio.02021-25openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mbio.02698-22openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mmbr.00078-22openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/mmbr.00153-25openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/msphere.00290-21openalex-snapshot

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inferred← citeshttps://doi.org/10.1128/spectrum.03938-25openalex-snapshot

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inferred← citeshttps://doi.org/10.1134/s0006350922040133openalex-snapshot

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inferred← citeshttps://doi.org/10.1134/s1990793124700441openalex-snapshot

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inferred← citeshttps://doi.org/10.1371/journal.pcbi.1009788openalex-snapshot

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inferred← citeshttps://doi.org/10.1371/journal.pgen.1009085openalex-snapshot

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inferred← citeshttps://doi.org/10.1371/journal.pgen.1009148openalex-snapshot

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inferred← citeshttps://doi.org/10.1371/journal.pone.0231562openalex-snapshot

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inferred← citeshttps://doi.org/10.14529/jsfi220203openalex-snapshot

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inferred← citeshttps://doi.org/10.1557/s43579-023-00445-zopenalex-snapshot

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inferred← citeshttps://doi.org/10.21203/rs.3.rs-1089148/v1openalex-snapshot

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inferred← citeshttps://doi.org/10.2197/ipsjtbio.17.55openalex-snapshot

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inferred← citeshttps://doi.org/10.3103/s0096392525601005openalex-snapshot

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inferred← citeshttps://doi.org/10.31857/s0041377123030070openalex-snapshot

Visualization of Escherichia coli Single Cells in the State of SOS Response Using Expansion Microscopy

inferred← citeshttps://doi.org/10.31857/s0207401x23060067openalex-snapshot

Конденсация ДНК в бактериях

inferred← citeshttps://doi.org/10.31857/s0207401x24070102openalex-snapshot

The structure of DNA in anabiotic and mummified Escherichia coli cells

inferred← citeshttps://doi.org/10.33263/briac134.360openalex-snapshot

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inferred← citeshttps://doi.org/10.33594/000000613openalex-snapshot

Nucleic Acids Regulate Intracellular Ions and Membrane Potential

inferred← citeshttps://doi.org/10.3389/fcell.2023.1214962openalex-snapshot

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inferred← citeshttps://doi.org/10.3389/fmicb.2020.00534openalex-snapshot

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inferred← citeshttps://doi.org/10.3389/fmicb.2020.00590openalex-snapshot

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inferred← citeshttps://doi.org/10.3389/fmicb.2020.01247openalex-snapshot

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inferred← citeshttps://doi.org/10.3389/fmicb.2022.856547openalex-snapshot

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inferred← citeshttps://doi.org/10.3389/fmicb.2022.879321openalex-snapshot

Changes in Higher-Order Chromosomal Structure of Klebsiella pneumoniae Under Simulated Microgravity

inferred← citeshttps://doi.org/10.3389/fmicb.2023.1107093openalex-snapshot

MukBEF-dependent chromosomal organization in widened Escherichia coli

inferred← citeshttps://doi.org/10.3389/fmicb.2023.1146406openalex-snapshot

Mycobacterial IHF is a highly dynamic nucleoid-associated protein that assists HupB in organizing chromatin

inferred← citeshttps://doi.org/10.3389/fmicb.2023.1195448openalex-snapshot

Label-free detection and identification of single bacteria via terahertz near-field imaging

inferred← citeshttps://doi.org/10.3389/fmicb.2023.1271138openalex-snapshot

Pangenome-level analysis of nucleoid-associated proteins in the Acidithiobacillia class: insights into their functional roles in mobile genetic elements biology

inferred← citeshttps://doi.org/10.3389/fmolb.2021.644133openalex-snapshot

Generating Chromosome Geometries in a Minimal Cell From Cryo-Electron Tomograms and Chromosome Conformation Capture Maps

inferred← citeshttps://doi.org/10.3389/frsfm.2022.914494openalex-snapshot

Can the Concentration of a Transcription Factor Affect Gene Expression?

inferred← citeshttps://doi.org/10.3390/applmicrobiol5010017openalex-snapshot

Towards a Better Control of Engineered Circuit Transcription in Bacterial Genomes

inferred← citeshttps://doi.org/10.3390/biom11111724openalex-snapshot

Interaction of the Escherichia coli HU Protein with Various Topological Forms of DNA

inferred← citeshttps://doi.org/10.3390/biom12040481openalex-snapshot

Interplay between Alba and Cren7 Regulates Chromatin Compaction in Sulfolobus solfataricus

inferred← citeshttps://doi.org/10.3390/biom12060831openalex-snapshot

Spatiotemporal Coupling of DNA Supercoiling and Genomic Sequence Organization—A Timing Chain for the Bacterial Growth Cycle?

inferred← citeshttps://doi.org/10.3390/biomedicines11102780openalex-snapshot

Synergistic Antimicrobial Effect of Cold Atmospheric Plasma and Redox-Active Nanoparticles

inferred← citeshttps://doi.org/10.3390/dna4040032openalex-snapshot

DNA as a Double-Coding Device for Information Conversion and Organization of a Self-Referential Unity

inferred← citeshttps://doi.org/10.3390/ijms22157928openalex-snapshot

A Fork Trap in the Chromosomal Termination Area Is Highly Conserved across All Escherichia coli Phylogenetic Groups

inferred← citeshttps://doi.org/10.3390/ijms23074008openalex-snapshot

Small Prokaryotic DNA-Binding Proteins Protect Genome Integrity throughout the Life Cycle

inferred← citeshttps://doi.org/10.3390/ijms241310964openalex-snapshot

Search for Dispersed Repeats in Bacterial Genomes Using an Iterative Procedure

inferred← citeshttps://doi.org/10.3390/ijms25084441openalex-snapshot

Study of Dispersed Repeats in the Cyanidioschyzon merolae Genome

inferred← citeshttps://doi.org/10.3390/life13051114openalex-snapshot

Recollections of a Helmstetter Disciple

inferred← citeshttps://doi.org/10.3390/life16040638openalex-snapshot

Gravity as a Boundary Condition for the Evolution of Three-Dimensional Multicellularity

inferred← citeshttps://doi.org/10.3390/membranes15040103openalex-snapshot

DNA Transactions in Bacteria and Membranes: A Place for the Hfq Protein?

inferred← citeshttps://doi.org/10.3390/microorganisms9050934openalex-snapshot

MukB Is a Gene Necessary for Rapid Proliferation of Vibrio vulnificus in the Systemic Circulation but Not at the Local Infection Site in the Mouse Wound Infection Model

inferred← citeshttps://doi.org/10.4103/bbrj.bbrj_302_21openalex-snapshot

DNA Binding and Cleavage Study of Novel Ruthenium (II)-Polypyridine-5-(3-pyridyl)-4H-1,2,4-Triazole-3-Thiol Complex on Escherichia Coli Genomic DNA

inferred← citeshttps://doi.org/10.64898/2026.01.13.699244openalex-snapshot

GapR is a nucleoid-associated protein that stiffens and overtwists DNA to promote transcription and replication

inferred← citeshttps://doi.org/10.70675/121231b7zf5eez4064zaf52zd8b8e6e71fd3openalex-snapshot

Modelling transcriptional regulation by DNA supercoiling in bacteria

inferred← citeshttps://doi.org/10.70675/1d988e83z3df4z4100z88e1z37c29b65381dopenalex-snapshot

Intracellular spatial organisation : The effects of non-ideal solutions

inferred← citeshttps://doi.org/10.70675/2219a318z5d00z4fa5zade7z2e6ecc40516copenalex-snapshot

Rôle de la RNase III dans l'adaptation d'Escherichia coli à son environnement

inferred← citeshttps://doi.org/10.70675/283a607czc8fdz43a8z9512ze88ef25b8e68openalex-snapshot

Etude du mécanisme d'auto-assemblage du principal système de partition de l'ADN bactérien

inferred← citeshttps://doi.org/10.70675/3876cf02z2295z4850zbc97z0ad459b48495openalex-snapshot

Insights into the regulatory networks of Pseudomonas aeruginosa

inferred← citeshttps://doi.org/10.70675/5126637dz5860z4289zbf95z637759e3061aopenalex-snapshot

Bacterial morphology analysis by cryo-soft X-ray tomography and cryo-(scanning) transmission electron microscopy

inferred← citeshttps://doi.org/10.70675/63695de5z98cbz413bzb06bz74a37611259copenalex-snapshot

In vivo study of DNA topology in hyperthermophilic archaeon Thermococcus kodakarensis

inferred← citeshttps://doi.org/10.70675/a5e4bd2az13bez477cz92aez8c90736cad60openalex-snapshot

Genome-wide effects of T4 phage Ndd protein expression on the Escherichia coli nucleoid

inferred← citeshttps://doi.org/10.70675/bb536b20z5590z43cez93b7z6373aa5f2949openalex-snapshot

Genomic contacts reveal the control of sister chromosome decatenation in E. coli

inferred← citeshttps://doi.org/10.70675/e14a5d84zba60z4abfza023z81a1de13fb51openalex-snapshot

The Dark Secrets of Fluorescent Proteins : Manipulating Fluorophore Photophysics to Boost Quantitative SMLM

inferred← citeshttps://doi.org/10.70675/fab39073z4e57z4801zb257z92e432d393b4openalex-snapshot

Interaction of the Hfq protein with the bacterial membrane and functional consequences on RNA export

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