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Genome-Wide Analysis of Protein-Protein Interactions and Involvement of Viral Proteins in SARS-CoV Replication

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Severe acute respiratory syndrome coronavirus protein 7a interacts with hSGT
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The SARS-Coronavirus PLnc domain of nsp3 as a replication/transcription scaffolding protein
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mRNA Cap-1 Methyltransferase in the SARS Genome
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A genomic approach of the hepatitis C virus generates a protein interaction map
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A protein linkage map of Escherichia coli bacteriophage T7
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inferredcites →https://doi.org/10.1074/jbc.m708375200openalex-snapshot
Structural and Functional Analyses of the Severe Acute Respiratory Syndrome Coronavirus Endoribonuclease Nsp15
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Coronavirus Main Proteinase (3CL pro ) Structure: Basis for Design of Anti-SARS Drugs
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The Genome Sequence of the SARS-Associated Coronavirus
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Construction of a Severe Acute Respiratory Syndrome Coronavirus Infectious cDNA Clone and a Replicon To Study Coronavirus RNA Synthesis
inferredcites →https://doi.org/10.1128/jvi.00407-08openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.00414-06openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.00467-06openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.00483-06openalex-snapshot
Dodecamer Structure of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein nsp10
inferredcites →https://doi.org/10.1128/jvi.01296-07openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.01467-06openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.01506-07openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.01691-06openalex-snapshot
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inferredcites →https://doi.org/10.1128/jvi.02236-06openalex-snapshot
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Role for Nonstructural Protein 1 of Severe Acute Respiratory Syndrome Coronavirus in Chemokine Dysregulation
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Ultrastructure and Origin of Membrane Vesicles Associated with the Severe Acute Respiratory Syndrome Coronavirus Replication Complex
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Murine Hepatitis Virus Replicase Protein nsp10 Is a Critical Regulator of Viral RNA Synthesis
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Crystal Structure of a Monomeric Form of Severe Acute Respiratory Syndrome Coronavirus Endonuclease nsp15 Suggests a Role for Hexamerization as an Allosteric Switch
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Enhancement of Hepatitis C Virus RNA Replication by Cell Culture-Adaptive Mutations
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Protein-Protein Interactions between Hepatitis C Virus Nonstructural Proteins
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Multiple Enzymatic Activities Associated with Severe Acute Respiratory Syndrome Coronavirus Helicase
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The Severe Acute Respiratory Syndrome Coronavirus Nsp15 Protein Is an Endoribonuclease That Prefers Manganese as a Cofactor
inferredcites →https://doi.org/10.1128/jvi.78.22.12683-12688.2004openalex-snapshot
The Nucleoprotein Is Required for Efficient Coronavirus Genome Replication
inferredcites →https://doi.org/10.1128/jvi.78.24.13600-13612.2004openalex-snapshot
Identification of Severe Acute Respiratory Syndrome Coronavirus Replicase Products and Characterization of Papain-Like Protease Activity
inferredcites →https://doi.org/10.1128/jvi.79.11.6620-6630.2005openalex-snapshot
Selective Replication of Coronavirus Genomes That Express Nucleocapsid Protein
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ADP-Ribose-1"-Monophosphatase: a Conserved Coronavirus Enzyme That Is Dispensable for Viral Replication in Tissue Culture
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Structural Genomics of the Severe Acute Respiratory Syndrome Coronavirus: Nuclear Magnetic Resonance Structure of the Protein nsP7
inferredcites →https://doi.org/10.1128/jvi.79.21.13399-13411.2005openalex-snapshot
The nsp2 Replicase Proteins of Murine Hepatitis Virus and Severe Acute Respiratory Syndrome Coronavirus Are Dispensable for Viral Replication
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Severe Acute Respiratory Syndrome Coronavirus Group-Specific Open Reading Frames Encode Nonessential Functions for Replication in Cell Cultures and Mice
inferredcites →https://doi.org/10.1128/jvi.79.24.15189-15198.2005openalex-snapshot
The Papain-Like Protease of Severe Acute Respiratory Syndrome Coronavirus Has Deubiquitinating Activity
inferredcites →https://doi.org/10.1128/jvi.79.5.3182-3186.2005openalex-snapshot
Severe Acute Respiratory Syndrome Coronavirus 3a Protein Is a Viral Structural Protein
inferredcites →https://doi.org/10.1128/jvi.79.9.5288-5295.2005openalex-snapshot
Identification of Novel Subgenomic RNAs and Noncanonical Transcription Initiation Signals of Severe Acute Respiratory Syndrome Coronavirus
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Biochemical Aspects of Coronavirus Replication and Virus-Host Interaction
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Analysis of Intraviral Protein-Protein Interactions of the SARS Coronavirus ORFeome
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Mammalian Two-Hybrid System: A Complementary Approach to the Yeast Two-Hybrid System
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SARS: Understanding the Virus and Development of Rational Therapy
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Novel SARS Unique AdoMet-Dependent Methyltransferase
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Biochemical Characterization of Exoribonuclease Encoded by SARS Coronavirus

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Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1080/21505594.2024.2397492openalex-snapshot
ATP synthase subunit ATP5B interacts with TGEV Nsp2 and acts as a negative regulator of TGEV replication
inferred← citeshttps://doi.org/10.1093/cei/uxae118openalex-snapshot
Single-cell analysis of lung epithelial cells reveals age and cell population-specific responses to SARS-CoV-2 infection in ciliated cells
inferred← citeshttps://doi.org/10.1093/nar/gkp904openalex-snapshot
The RNA polymerase activity of SARS-coronavirus nsp12 is primer dependent
inferred← citeshttps://doi.org/10.1093/nar/gkr893openalex-snapshot
The SARS-coronavirus nsp7+nsp8 complex is a unique multimeric RNA polymerase capable of both de novo initiation and primer extension
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.001.0001openalex-snapshot
The Sentient Cell
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.002.0004openalex-snapshot
Preface
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.002.0005openalex-snapshot
Prologue: Setting the Stage
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.002.0007openalex-snapshot
Abbreviations
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.002.0008openalex-snapshot
Advanced Praise for The Sentient Cell: The Cellular Foundations of Consciousness
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0001openalex-snapshot
The Cellular Basis of Consciousness (CBC)
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0002openalex-snapshot
It’s Cells All the Way Down
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0003openalex-snapshot
What Is Life? The Vitalism–Mechanism Debate and the Origins of Life
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0004openalex-snapshot
Emergence and Evolution of Cells
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0005openalex-snapshot
The Structural and Bioelectrical Basis of Cells
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0006openalex-snapshot
The Biophysical Basis of Cellular Sentience
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0007openalex-snapshot
The Biological Information Cycle
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0008openalex-snapshot
Genes Are Tools of Intelligent Cells
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0009openalex-snapshot
The N-Space Episenome
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0010openalex-snapshot
Anaesthetics and Their Cellular Targets
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0011openalex-snapshot
Plant Sentience
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.003.0012openalex-snapshot
Issues of Ethics and Morality
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.005.0001openalex-snapshot
An Exercise in Lexicography: Defining(?) Consciousness
inferred← citeshttps://doi.org/10.1093/oso/9780198873211.005.0002openalex-snapshot
Glossary of Technical Terms in the Biological Sciences
inferred← citeshttps://doi.org/10.1101/2020.04.17.047498openalex-snapshot
The crystal structure of nsp10-nsp16 heterodimer from SARS-CoV-2 in complex with S-adenosylmethionine
inferred← citeshttps://doi.org/10.1101/2020.06.09.082834openalex-snapshot
SARS-CoV-2 sequence typing, evolution and signatures of selection using CoVa, a Python-based command-line utility
inferred← citeshttps://doi.org/10.1101/2020.07.16.207308openalex-snapshot
SARS-CoV-2 structural coverage map reveals state changes that disrupt host immunity
inferred← citeshttps://doi.org/10.1101/2021.10.07.463611openalex-snapshot
A bacteria-based assay to study SARS-CoV-2 protein-protein interactions
inferred← citeshttps://doi.org/10.1101/2024.06.18.599549openalex-snapshot
A Coronaviral Pore-Replicase Complex Drives RNA Synthesis in Double Membrane Vesicles
inferred← citeshttps://doi.org/10.1107/s1744309112018623openalex-snapshot
Purification, crystallization and preliminary X-ray analysis of nonstructural protein 2 (nsp2) from avian infectious bronchitis virus
inferred← citeshttps://doi.org/10.1107/s2053230x14023085openalex-snapshot
Expression, crystallization and preliminary crystallographic study of the functional mutant (N60K) of nonstructural protein 9 fromHuman coronavirus HKU1
inferred← citeshttps://doi.org/10.1111/febs.16435openalex-snapshot
Integrative structure determination of histones H3 and H4 using genetic interactions
inferred← citeshttps://doi.org/10.1126/sciadv.adq9580openalex-snapshot
A coronaviral pore-replicase complex links RNA synthesis and export from double-membrane vesicles
inferred← citeshttps://doi.org/10.1126/scisignal.abe1202openalex-snapshot
High-resolution structures of the SARS-CoV-2 2′- O -methyltransferase reveal strategies for structure-based inhibitor design
inferred← citeshttps://doi.org/10.1128/jvi.00110-15openalex-snapshot
Mutations in Coronavirus Nonstructural Protein 10 Decrease Virus Replication Fidelity
inferred← citeshttps://doi.org/10.1128/jvi.00569-10openalex-snapshot
The Coronavirus Nucleocapsid Protein Is Dynamically Associated with the Replication-Transcription Complexes
inferred← citeshttps://doi.org/10.1128/jvi.00869-24openalex-snapshot
ISGylation of the SARS-CoV-2 N protein by HERC5 impedes N oligomerization and thereby viral RNA synthesis
inferred← citeshttps://doi.org/10.1128/jvi.00900-24openalex-snapshot
Requirement of the N-terminal region of nonstructural protein 1 in cis for SARS-CoV-2 defective RNA replication
inferred← citeshttps://doi.org/10.1128/jvi.00948-15openalex-snapshot
Coronavirus nsp10/nsp16 Methyltransferase Can Be Targeted by nsp10-Derived Peptide In Vitro and In Vivo To Reduce Replication and Pathogenesis
inferred← citeshttps://doi.org/10.1128/jvi.01112-18openalex-snapshot
Mapping the Nonstructural Protein Interaction Network of Porcine Reproductive and Respiratory Syndrome Virus
inferred← citeshttps://doi.org/10.1128/jvi.01246-20openalex-snapshot
The Enzymatic Activity of the nsp14 Exoribonuclease Is Critical for Replication of MERS-CoV and SARS-CoV-2
inferred← citeshttps://doi.org/10.1128/jvi.01253-09openalex-snapshot
Nuclear Magnetic Resonance Structure of the Nucleic Acid-Binding Domain of Severe Acute Respiratory Syndrome Coronavirus Nonstructural Protein 3
inferred← citeshttps://doi.org/10.1128/jvi.01275-13openalex-snapshot
Characterization of a Critical Interaction between the Coronavirus Nucleocapsid Protein and Nonstructural Protein 3 of the Viral Replicase-Transcriptase Complex
inferred← citeshttps://doi.org/10.1128/jvi.01287-10openalex-snapshot
An Interaction between the Nucleocapsid Protein and a Component of the Replicase-Transcriptase Complex Is Crucial for the Infectivity of Coronavirus Genomic RNA
inferred← citeshttps://doi.org/10.1128/jvi.01331-15openalex-snapshot
The Nucleocapsid Protein of Coronaviruses Acts as a Viral Suppressor of RNA Silencing in Mammalian Cells
inferred← citeshttps://doi.org/10.1128/jvi.01716-09openalex-snapshot
Dynamics of Coronavirus Replication-Transcription Complexes
inferred← citeshttps://doi.org/10.1128/jvi.02480-09openalex-snapshot
Achieving a Golden Mean: Mechanisms by Which Coronaviruses Ensure Synthesis of the Correct Stoichiometric Ratios of Viral Proteins
inferred← citeshttps://doi.org/10.1128/mbio.00524-13openalex-snapshot
Severe Acute Respiratory Syndrome Coronavirus Nonstructural Proteins 3, 4, and 6 Induce Double-Membrane Vesicles
inferred← citeshttps://doi.org/10.1128/mbio.01658-17openalex-snapshot
Expression and Cleavage of Middle East Respiratory Syndrome Coronavirus nsp3-4 Polyprotein Induce the Formation of Double-Membrane Vesicles That Mimic Those Associated with Coronaviral RNA Replication
inferred← citeshttps://doi.org/10.1128/mbio.02320-16openalex-snapshot
In Situ Tagged nsp15 Reveals Interactions with Coronavirus Replication/Transcription Complex-Associated Proteins
inferred← citeshttps://doi.org/10.1128/mbio.02936-21openalex-snapshot
A Bacterial Cell-Based Assay To Study SARS-CoV-2 Protein-Protein Interactions
inferred← citeshttps://doi.org/10.1128/mmbr.05021-11openalex-snapshot
Diversity in GeneticIn VivoMethods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System
inferred← citeshttps://doi.org/10.1134/s1019331622040256openalex-snapshot
Mechanisms of Coronavirus Genome Stability As Potential Targets for Antiviral Drugs
inferred← citeshttps://doi.org/10.1146/annurev-virology-031413-085507openalex-snapshot
Thinking Outside the Triangle: Replication Fidelity of the Largest RNA Viruses
inferred← citeshttps://doi.org/10.1186/s12985-019-1182-0openalex-snapshot
Coronavirus envelope protein: current knowledge
inferred← citeshttps://doi.org/10.1186/s12985-022-01783-5openalex-snapshot
The molecular mechanism of SARS-CoV-2 evading host antiviral innate immunity
inferred← citeshttps://doi.org/10.1186/s13578-021-00644-yopenalex-snapshot
Genome-wide analysis of protein–protein interactions and involvement of viral proteins in SARS-CoV-2 replication
inferred← citeshttps://doi.org/10.1186/s13578-026-01587-yopenalex-snapshot
The transmembrane segments of SARS-CoV-2 nsp3 govern viral intracellular trafficking
inferred← citeshttps://doi.org/10.1210/me.2010-0115openalex-snapshot
Endogenous Activation of Glucokinase by 6-Phosphofructo-2-Kinase/Fructose-2,6-Bisphosphatase Is Glucose Dependent
inferred← citeshttps://doi.org/10.12677/is.2024.62002openalex-snapshot
Progress in Viral Immunology
inferred← citeshttps://doi.org/10.1371/annotation/a0dde376-2eb1-4ce3-8887-d29f5ba6f162openalex-snapshot
Correction: In Vitro Reconstitution of SARS-Coronavirus mRNA Cap Methylation
inferred← citeshttps://doi.org/10.1371/journal.pone.0036521openalex-snapshot
Mechanism of Nucleic Acid Unwinding by SARS-CoV Helicase
inferred← citeshttps://doi.org/10.1371/journal.pone.0253364openalex-snapshot
Biochemical characterization of protease activity of Nsp3 from SARS-CoV-2 and its inhibition by nanobodies
inferred← citeshttps://doi.org/10.1371/journal.ppat.1000863openalex-snapshot
In Vitro Reconstitution of SARS-Coronavirus mRNA Cap Methylation
inferred← citeshttps://doi.org/10.1371/journal.ppat.1002059openalex-snapshot
Crystal Structure and Functional Analysis of the SARS-Coronavirus RNA Cap 2′-O-Methyltransferase nsp10/nsp16 Complex
inferred← citeshttps://doi.org/10.1371/journal.ppat.1002294openalex-snapshot
Biochemical and Structural Insights into the Mechanisms of SARS Coronavirus RNA Ribose 2′-O-Methylation by nsp16/nsp10 Protein Complex
inferred← citeshttps://doi.org/10.1371/journal.ppat.1002331openalex-snapshot
The SARS-Coronavirus-Host Interactome: Identification of Cyclophilins as Target for Pan-Coronavirus Inhibitors
inferred← citeshttps://doi.org/10.1371/journal.ppat.1003500openalex-snapshot
The Footprint of Genome Architecture in the Largest Genome Expansion in RNA Viruses
inferred← citeshttps://doi.org/10.1371/journal.ppat.1010909openalex-snapshot
Combinatorial interactions between viral proteins expand the potential functional landscape of the tomato yellow leaf curl virus proteome
inferred← citeshttps://doi.org/10.15252/msb.202010079openalex-snapshot
SARS‐CoV‐2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms
inferred← citeshttps://doi.org/10.18699/vjgb-22-15openalex-snapshot
Replication-transcription complex of coronaviruses: functions of individual viral non-structural subunits, properties and architecture of their complexes
inferred← citeshttps://doi.org/10.21203/rs.3.rs-191980/v1openalex-snapshot
Inhibitory effects of aviptadil on the SARS-CoV-2 nsp10/ nsp16 protein complex
inferred← citeshttps://doi.org/10.2174/1386207325666220816141028openalex-snapshot
Molecular Interactions of Zyesami with the SARS-CoV-2 nsp10/nsp16 Protein Complex
inferred← citeshttps://doi.org/10.2174/1876402911666181218145459openalex-snapshot
Lab-on-a-chip Dielectrophoretic Manipulation of Beta-2 Microglobulin for Toxin Removal in An Artificial Kidney
inferred← citeshttps://doi.org/10.2174/9789815274943124010009openalex-snapshot
Landscape of Host Genetic Factors Correlating with SARS-CoV
inferred← citeshttps://doi.org/10.2174/9789815322194125010004openalex-snapshot
Genetic Architecture of Host Proteins Involved in MERS-CoV
inferred← citeshttps://doi.org/10.30466/vrf.2023.2009322.3977openalex-snapshot
Expression and immunogenicity of non-structural protein 8 of porcine epidemic diarrhea virus.
inferred← citeshttps://doi.org/10.32657/10356/140136openalex-snapshot
Functional studies of viral and host cell factors involved in the regulation of coronaviruses replication and pathogenesis
inferred← citeshttps://doi.org/10.3389/fimmu.2024.1340332openalex-snapshot
Mechanism, structural and functional insights into nidovirus-induced double-membrane vesicles
inferred← citeshttps://doi.org/10.3389/fmicb.2022.907422openalex-snapshot
Genome-Wide Analysis of the Indispensable Role of Non-structural Proteins in the Replication of SARS-CoV-2
inferred← citeshttps://doi.org/10.3389/fmicb.2024.1490944openalex-snapshot
Suppression of SARS-CoV-2 nucleocapsid protein dimerization by ISGylation and its counteraction by viral PLpro
inferred← citeshttps://doi.org/10.3389/fpubh.2024.1386596openalex-snapshot
Unlocking the puzzle: non-defining mutations in SARS-CoV-2 proteome may affect vaccine effectiveness
inferred← citeshttps://doi.org/10.3390/ijms23073711openalex-snapshot
Host and Viral Zinc-Finger Proteins in COVID-19
inferred← citeshttps://doi.org/10.3390/ijms25063378openalex-snapshot
Bioinformatics Insights on Viral Gene Expression Transactivation: From HIV-1 to SARS-CoV-2
inferred← citeshttps://doi.org/10.3390/microorganisms12030630openalex-snapshot
Exploring Viral–Host Protein Interactions as Antiviral Therapies: A Computational Perspective
inferred← citeshttps://doi.org/10.3390/molecules27092918openalex-snapshot
Opportunities and Challenges in Targeting the Proofreading Activity of SARS-CoV-2 Polymerase Complex
inferred← citeshttps://doi.org/10.3390/molecules27134305openalex-snapshot
Microbial Natural Products with Antiviral Activities, Including Anti-SARS-CoV-2: A Review
inferred← citeshttps://doi.org/10.3390/v10090477openalex-snapshot
Infectious Bronchitis Virus Nonstructural Protein 4 Alone Induces Membrane Pairing
inferred← citeshttps://doi.org/10.3390/v14091991openalex-snapshot
SARS-CoV-2 Non-Structural Proteins and Their Roles in Host Immune Evasion
inferred← citeshttps://doi.org/10.3390/v4113245openalex-snapshot
Biogenesis and Dynamics of the Coronavirus Replicative Structures
inferred← citeshttps://doi.org/10.37175/stemedicine.v1i2.39openalex-snapshot
Functional studies of the coronavirus nonstructural proteins
inferred← citeshttps://doi.org/10.4161/rna.8.2.14991openalex-snapshot
RNA-RNA and RNA-protein interactions in coronavirus replication and transcription
inferred← citeshttps://doi.org/10.4161/rna.8.2.15013openalex-snapshot
Coronaviruses
inferred← citeshttps://doi.org/10.52711/0974-360x.2022.00042openalex-snapshot
De Novo In-silico Pharmacological Analysis of Herbal Phytoconstituents for COVID-19 Treatment
inferred← citeshttps://doi.org/10.6084/m9.figshare.15040974openalex-snapshot
Additional file 1 of Genome-wide analysis of protein–protein interactions and involvement of viral proteins in SARS-CoV-2 replication
inferred← citeshttps://doi.org/10.70675/8e1435e3zc63az4f17z8e10zc76c0a7a533bopenalex-snapshot
Les méthyltransférases de la coiffe du MERS-CoV : étude fonctionnelle et recherches d'inhibiteurs
inferred← citeshttps://doi.org/10.70675/bdbbffa0za5a7z46e6z9494z59bdacd89ba5openalex-snapshot
Méthyltransférases des filovirus et autres mononégavirus : caractérisation, originalités et drug design
inferred← citeshttps://doi.org/10.70675/d9508fc4zda51z4397za492zee1866100313openalex-snapshot
Rôle des cyclophilines dans la réplication des Coronavirus
inferred← citeshttps://doi.org/10.7150/ijbs.64977openalex-snapshot
The intraviral protein-protein interaction of SARS-CoV-2 reveals the key role of N protein in virus-like particle assembly
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