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Comparison of the Fecal Microbiota of Healthy Horses and Horses with Colitis by High Throughput Sequencing of the V3-V5 Region of the 16S rRNA Gene

https://doi.org/10.1371/journal.pone.0041484
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Similarity of the ruminal bacteria across individual lactating cows
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The Bacterial Community of the Horse Gastrointestinal Tract and Its Relation to Fermentative Acidosis, Laminitis, Colic, and Stomach Ulcers
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Acute Diarrhea in Hospitalized Horses
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Prevalence of Clostridium difficile in horses
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Basic Local Alignment Search Tool
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Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes
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A core gut microbiome in obese and lean twins
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Fecal microbiota transplantation and emerging applications
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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
inferredcites →https://doi.org/10.1086/525047openalex-snapshot
Decreased Diversity of the Fecal Microbiome in RecurrentClostridium difficile–Associated Diarrhea
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UCHIME improves sensitivity and speed of chimera detection
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Changes in the composition of the human fecal microbiome following bacteriotherapy for recurrent Clostridium difficile-associated diarrhea
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Probiotics as prevention and treatment for diarrhea
inferredcites →https://doi.org/10.1097/qco.0b013e32832a8a5dopenalex-snapshot
Commensal bacteria, traditional and opportunistic pathogens, dysbiosis and bacterial killing in inflammatory bowel diseases
inferredcites →https://doi.org/10.1101/gr.126516.111openalex-snapshot
Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma
inferredcites →https://doi.org/10.1101/gr.126573.111openalex-snapshot
Genomic analysis identifies association of Fusobacterium with colorectal carcinoma
inferredcites →https://doi.org/10.1111/j.1574-6968.2011.02434.xopenalex-snapshot
Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons
inferredcites →https://doi.org/10.1111/j.1939-1676.1997.tb00071.xopenalex-snapshot
A Clinical Trial of Probiotic Administration for Prevention of Salmonella Shedding in the Postoperative Period in Horses With Colic
inferredcites →https://doi.org/10.1111/j.1939-1676.2009.0383.xopenalex-snapshot
Infectious Agents Detected in the Feces of Diarrheic Foals: A Retrospective Study of 233 Cases (2003–2008)
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Diversity of the Human Intestinal Microbial Flora
inferredcites →https://doi.org/10.1128/aem.01510-09openalex-snapshot
Improvement of the Representation of Bifidobacteria in Fecal Microbiota Metagenomic Libraries by Application of thecpn60Universal Primer Cocktail
inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot
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inferredcites →https://doi.org/10.1128/aem.65.11.4799-4807.1999openalex-snapshot
Direct Analysis of Genes Encoding 16S rRNA from Complex Communities Reveals Many Novel Molecular Species within the Human Gut
inferredcites →https://doi.org/10.1128/jcm.05176-11openalex-snapshot
Clostridium difficile Carriage in Elderly Subjects and Associated Changes in the Intestinal Microbiota
inferredcites →https://doi.org/10.1136/gut.2009.191320openalex-snapshot
Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum / necrophorum
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Induction of experimental ulcerative colitis by Fusobacterium varium isolated from colonic mucosa of patients with ulcerative colitis
inferredcites →https://doi.org/10.1152/ajplegacy.1974.226.5.1043openalex-snapshot
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inferredcites →https://doi.org/10.1186/1471-2105-12-38openalex-snapshot
Removing Noise From Pyrosequenced Amplicons
inferredcites →https://doi.org/10.1186/1471-2105-9-386openalex-snapshot
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
inferredcites →https://doi.org/10.1186/1471-2180-10-206openalex-snapshot
Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags
inferredcites →https://doi.org/10.1371/journal.pcbi.1000352openalex-snapshot
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
inferredcites →https://doi.org/10.1371/journal.pone.0009768openalex-snapshot
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inferredcites →https://doi.org/10.2460/javma.1999.215.03.358openalex-snapshot
Prevalence of Clostridium perfringens enterotoxin and Clostridium difficile toxin A in feces of horses with diarrhea and colic
inferredcites →https://doi.org/10.2460/javma.2005.226.2031openalex-snapshot
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inferredcites →https://doi.org/10.2460/javma.2005.227.954openalex-snapshot
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inferredcites →https://doi.org/10.2746/042516409x447806openalex-snapshot
Changes in faecal bacteria associated with concentrate and forage‐only diets fed to horses in training

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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In-depth snapshot of the equine subgingival microbiome
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Dysbiosis of the fecal microbiota in feedlot cattle with hemorrhagic diarrhea
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Storage of equine faecal microbiota transplantation solution has minimal impact on major bacterial communities and structure
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The effect of anthelmintic treatment and efficacy on the faecal microbiota of healthy adult horses
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Expression of immune regulatory genes correlate with the abundance of specific Clostridiales and Verrucomicrobia species in the equine ileum and cecum
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Priming for welfare: gut microbiota is associated with equitation conditions and behavior in horse athletes
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The pelvic flexure separates distinct microbial communities in the equine hindgut
inferred← citeshttps://doi.org/10.1038/s41598-021-83897-4openalex-snapshot
Faecal bacterial composition in horses with and without free faecal liquid: a case control study
inferred← citeshttps://doi.org/10.1038/s41598-023-50429-1openalex-snapshot
Characteristics of gut microbiota in captive Asian elephants (Elephas maximus) from infant to elderly
inferred← citeshttps://doi.org/10.1038/s41598-024-63868-1openalex-snapshot
Dysbiosis not observed in Canadian horses with free fecal liquid (FFL) using 16S rRNA sequencing
inferred← citeshttps://doi.org/10.1038/s41598-024-64657-6openalex-snapshot
Early-life gut bacterial community structure predicts disease risk and athletic performance in horses bred for racing
inferred← citeshttps://doi.org/10.1038/s41598-025-85495-0openalex-snapshot
Characteristics of gut microbiota profiles in Asian elephants (Elephas maximus) with gastrointestinal disorders
inferred← citeshttps://doi.org/10.1038/s42003-022-03116-2openalex-snapshot
Gut Microbiome Characteristics in feral and domesticated horses from different geographic locations
inferred← citeshttps://doi.org/10.1038/s42003-022-03977-7openalex-snapshot
Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes
inferred← citeshttps://doi.org/10.1038/s42003-025-09111-7openalex-snapshot
Bile acids segregate metabolic syndrome in a cohort of 100 deeply phenotyped horses
inferred← citeshttps://doi.org/10.1038/srep07485openalex-snapshot
Impacts of infection with different toxigenic Clostridium difficile strains on faecal microbiota in children
inferred← citeshttps://doi.org/10.1055/a-0824-5210openalex-snapshot
Beeinflussung der equinen Mikrobiota durch Fütterung und Probiotika: aktueller Stand der Forschung und rechtliche Grundlagen
inferred← citeshttps://doi.org/10.1055/a-1193-6671openalex-snapshot
Inflammatory Bowel Disease – Erkennen, Verstehen, Behandeln
inferred← citeshttps://doi.org/10.1055/a-1879-2400openalex-snapshot
Das Darmmikrobiom im (Un-)Gleichgewicht?
inferred← citeshttps://doi.org/10.1080/03610470.2019.1569886openalex-snapshot
Analysis of Microbial Community Structure in Traditional and Automated Moutai-Flavor Daqu
inferred← citeshttps://doi.org/10.1080/09064702.2013.877520openalex-snapshot
Molecular diversity of the equine caecal microbiota and its correlation to postprandial fermentation metabolites: A preliminary approach
inferred← citeshttps://doi.org/10.1093/femsec/fix139openalex-snapshot
Fecal bacterial communities of wild-captured and stranded green turtles (Chelonia mydas) on the Great Barrier Reef
inferred← citeshttps://doi.org/10.1093/femsle/fnz134openalex-snapshot
Fecal microbiota of captive Antillean manatee Trichechus manatus manatus
inferred← citeshttps://doi.org/10.1093/ilar/ilv033openalex-snapshot
An Update on the Status of Current Research on the Mammalian Microbiome
inferred← citeshttps://doi.org/10.1093/jas/skaa407openalex-snapshot
Effect of hay type on cecal and fecal microbiome and fermentation parameters in horses
inferred← citeshttps://doi.org/10.1093/jas/skac268openalex-snapshot
Biomarkers for monitoring the equine large intestinal inflammatory response to stress-induced dysbiosis and probiotic supplementation
inferred← citeshttps://doi.org/10.1093/jas/skad034openalex-snapshot
The influence of a probiotic/prebiotic supplement on microbial and metabolic parameters of equine cecal fluid or fecal slurry in vitro
inferred← citeshttps://doi.org/10.1093/jas/skaf061openalex-snapshot
Use of biotics in animals: impact on nutrition, health, and food production
inferred← citeshttps://doi.org/10.1093/jvimsj/aalag231openalex-snapshot
Quantitative assessment of specific bacterial taxa of the intestinal microbiota of healthy and diarrheic horses
inferred← citeshttps://doi.org/10.1093/nar/gkv1195openalex-snapshot
EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data
inferred← citeshttps://doi.org/10.1093/tas/txae124openalex-snapshot
Oral probiotic administration attenuates postexercise inflammation in horses
inferred← citeshttps://doi.org/10.1099/jmm.0.002176openalex-snapshot
Rapid bacterial community profiling of equine faecal, skin, milk and saliva samples using Oxford Nanopore long-read 16S rRNA amplicon sequencing
inferred← citeshttps://doi.org/10.1101/2021.04.30.442084openalex-snapshot
Metagenomic investigation of the equine faecal microbiome reveals extensive taxonomic and functional diversity
inferred← citeshttps://doi.org/10.1101/2022.01.24.477461openalex-snapshot
The first horse gut microbiome gene catalog reveals that rare microbiome ensures better cardiovascular fitness in endurance horses
inferred← citeshttps://doi.org/10.1101/2024.06.22.600212openalex-snapshot
A Metagenomic Analysis of the Fecal Microbiota of the Critically Endangered Eastern Bongo
inferred← citeshttps://doi.org/10.1101/2024.10.21.619412openalex-snapshot
A novel dataset of 2,362 equine fecal microbiomes from eight veterinary teaching hospital on three continents reveals dominant effects of geography, breed, and disease
inferred← citeshttps://doi.org/10.1101/233015openalex-snapshot
Metagenomic signature of natural strongyle infection in susceptible and resistant horses
inferred← citeshttps://doi.org/10.1111/1462-2920.14120openalex-snapshot
Evidence for selective bacterial community structuring on microplastics
inferred← citeshttps://doi.org/10.1111/asj.70147openalex-snapshot
Complete Extruded Diet: How Does Equine Fecal Microbiota Change During Intake Adaptation?
inferred← citeshttps://doi.org/10.1111/eve.12559openalex-snapshot
Equine faecal microbiota transplant: Current knowledge, proposed guidelines and future directions
inferred← citeshttps://doi.org/10.1111/eve.13991openalex-snapshot
In adult horses with diarrhoea, does faecal microbiota transplantation in addition to standard treatments improve the outcomes compared to standard treatments alone?
inferred← citeshttps://doi.org/10.1111/eve.14062openalex-snapshot
Diagnostic approach to chronic diarrhoea in adult horses
inferred← citeshttps://doi.org/10.1111/eve.70017openalex-snapshot
Pre‐anaesthetic fasting: Food for thought?
inferred← citeshttps://doi.org/10.1111/evj.12039openalex-snapshot
Risk factors for large colon volvulus in the UK
inferred← citeshttps://doi.org/10.1111/evj.12225openalex-snapshot
Science‐in‐brief: Clinical highlights from BEVA Congress 2013
inferred← citeshttps://doi.org/10.1111/evj.12324openalex-snapshot
Characterisation of the faecal metabolome and microbiome of Thoroughbred racehorses
inferred← citeshttps://doi.org/10.1111/evj.12333openalex-snapshot
Dominant components of the T horoughbred metabolome characterised by 1 H ‐nuclear magnetic resonance spectroscopy: A metabolite atlas of common biofluids
inferred← citeshttps://doi.org/10.1111/evj.12361openalex-snapshot
Changes in the faecal microbiota of mares precede the development of post partum colic
inferred← citeshttps://doi.org/10.1111/evj.12479openalex-snapshot
Effects of transport, fasting and anaesthesia on the faecal microbiota of healthy adult horses
inferred← citeshttps://doi.org/10.1111/evj.12517openalex-snapshot
Prevention of post operative complications following surgical treatment of equine colic: Current evidence
inferred← citeshttps://doi.org/10.1111/evj.12524openalex-snapshot
The longitudinal effect of a multi‐strain probiotic on the intestinal bacterial microbiota of neonatal foals
inferred← citeshttps://doi.org/10.1111/evj.12983openalex-snapshot
Early colonisation and temporal dynamics of the gut microbial ecosystem in Standardbred foals
inferred← citeshttps://doi.org/10.1111/evj.13010openalex-snapshot
Differences in the equine faecal microbiota between horses presenting to a tertiary referral hospital for colic compared with an elective surgical procedure
inferred← citeshttps://doi.org/10.1111/evj.13168openalex-snapshot
Culture‐independent and dependent evaluation of the equine paranasal sinus microbiota in health and disease
inferred← citeshttps://doi.org/10.1111/evj.13350openalex-snapshot
Outbreak of acute larval cyathostominosis – A “perfect storm” of inflammation and dysbiosis
inferred← citeshttps://doi.org/10.1111/evj.13389openalex-snapshot
Changes in the faecal bacterial microbiota during hospitalisation of horses with colic and the effect of different causes of colic
inferred← citeshttps://doi.org/10.1111/evj.13456openalex-snapshot
Hay versus haylage: Forage type influences the equine urinary metabonome and faecal microbiota
inferred← citeshttps://doi.org/10.1111/evj.13570openalex-snapshot
Characterisation of faecal microbiota in horses medicated with oral doxycycline hyclate
inferred← citeshttps://doi.org/10.1111/evj.13961openalex-snapshot
The faecal microbiome of Exmoor ponies shows step‐wise compositional changes with increasing levels of management by humans
inferred← citeshttps://doi.org/10.1111/evj.70127openalex-snapshot
Science‐in‐brief: The equine microbiome—What have we learned 5 years on?
inferred← citeshttps://doi.org/10.1111/jam.14240openalex-snapshot
Comparison of the gut microbiota composition between the wild and captive Tibetan wild ass ( Equus kiang )
inferred← citeshttps://doi.org/10.1111/jav.01262openalex-snapshot
Cohabitation with farm animals rather than breeding effort increases the infection with feather‐associated bacteria in the barn swallow Hirundo rustica
inferred← citeshttps://doi.org/10.1111/jbg.12441openalex-snapshot
Inter‐breed diversity and temporal dynamics of the faecal microbiota in healthy horses
inferred← citeshttps://doi.org/10.1111/jfbc.13488openalex-snapshot
Inhibitory effect of Jangkanghwan (Korean traditional food) on experimental ulcerative colitis in mice
inferred← citeshttps://doi.org/10.1111/jvim.12451openalex-snapshot
Probiotic Use in Horses – What is the Evidence for Their Clinical Efficacy?
inferred← citeshttps://doi.org/10.1111/jvim.14695openalex-snapshot
Characterization of the Fecal Bacterial Microbiota of Healthy and Diarrheic Dairy Calves
inferred← citeshttps://doi.org/10.1111/jvim.15778openalex-snapshot
Dysbiosis is not present in horses with fecal water syndrome when compared to controls in spring and autumn
inferred← citeshttps://doi.org/10.1111/jvim.16235openalex-snapshot
Transport stress affects the fecal microbiota in healthy donkeys
inferred← citeshttps://doi.org/10.1111/jvim.16562openalex-snapshot
Fecal microbiota of horses with colitis and its association with laminitis and survival during hospitalization
inferred← citeshttps://doi.org/10.1111/jvim.16596openalex-snapshot
The fecal bacterial microbiota of healthy and sick newborn foals
inferred← citeshttps://doi.org/10.1111/jvim.16853openalex-snapshot
Longitudinal effects of oral administration of antimicrobial drugs on fecal microbiota of horses
inferred← citeshttps://doi.org/10.1111/jvim.70039openalex-snapshot
Longitudinal Changes in Fecal Microbiota During Hospitalization in Horses With Different Types of Colic
inferred← citeshttps://doi.org/10.1111/lam.12137openalex-snapshot
The core faecal bacterial microbiome of Irish Thoroughbred racehorses
inferred← citeshttps://doi.org/10.1128/aem.02093-19openalex-snapshot
“Bowel on the Bench”: Proof of Concept of a Three-Stage, In Vitro Fermentation Model of the Equine Large Intestine
inferred← citeshttps://doi.org/10.1128/mbio.00338-12openalex-snapshot
Toward an Understanding of Changes in Diversity Associated with Fecal Microbiome Transplantation Based on 16S rRNA Gene Deep Sequencing
inferred← citeshttps://doi.org/10.1128/msystems.01124-20openalex-snapshot
Nutraceuticals Induced Changes in the Broiler Gastrointestinal Tract Microbiota
inferred← citeshttps://doi.org/10.1128/spectrum.00921-23openalex-snapshot
High-Throughput Sequencing Reveals a Dynamic Bacterial Linkage between the Captive White Rhinoceros and Its Environment
inferred← citeshttps://doi.org/10.1139/cjm-2018-0046openalex-snapshot
Lower dietary concentrate level increases bacterial diversity in the rumen of Cervus elaphus yarkandensis
inferred← citeshttps://doi.org/10.1152/japplphysiol.01131.2017openalex-snapshot
Probiotic supplementation in trained trotter horses: effect on blood clinical pathology data and urine metabolomic assessed in field
inferred← citeshttps://doi.org/10.11606/d.10.2022.tde-09092022-100623openalex-snapshot
>b /b<
inferred← citeshttps://doi.org/10.11606/d.74.2016.tde-01112016-154709openalex-snapshot
Detecção e enumeração de Streptococcus spp. e Lactobacillus spp. nas fezes de equinos recebendo dietas contendo níveis crescentes de Farelo de Glúten de Milho 21
inferred← citeshttps://doi.org/10.11606/d.74.2023.tde-15022024-102247openalex-snapshot
Efeito de dietas com diferentes fontes de energia sobre a digestibilidade aparente, metabolismo de ácidos graxos de cadeia curta e na composição da microbiota no ceco e fezes de equinos
inferred← citeshttps://doi.org/10.11606/t.10.2024.tde-14052024-161443openalex-snapshot
>b i /i<) sobre a saúde digestiva e desenvolvimento de potros durante a fase lactacional>/b<
inferred← citeshttps://doi.org/10.11606/t.74.2023.tde-26022024-091717openalex-snapshot
Microbiota fecal, intestinal e translocação bacteriana em equinos com síndrome cólica cirúrgica
inferred← citeshttps://doi.org/10.1177/1176934320914603openalex-snapshot
Identification of Gastrointestinal Microbiota in Hawaiian Green Turtles ( Chelonia mydas )
inferred← citeshttps://doi.org/10.1177/11786361221089005openalex-snapshot
Molecular Identification of Infectious Enteropathogens in Faeces of Healthy Horses
inferred← citeshttps://doi.org/10.1177/1535370219830075openalex-snapshot
Engineering the microbiome for animal health and conservation
inferred← citeshttps://doi.org/10.1186/1471-2164-15-492openalex-snapshot
Comparative transcriptomics of the model mushroom Coprinopsis cinerea reveals tissue-specific armories and a conserved circuitry for sexual development
inferred← citeshttps://doi.org/10.1186/1746-6148-10-120openalex-snapshot
The fecal microbiota of semi-free-ranging wood bison (Bison bison athabascae)
inferred← citeshttps://doi.org/10.1186/1746-6148-10-62openalex-snapshot
Molecular analysis of the microbiota in hard feces from healthy rabbits (Oryctolagus cuniculus) medicated with long term oral meloxicam
inferred← citeshttps://doi.org/10.1186/1746-6148-8-231openalex-snapshot
Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis
inferred← citeshttps://doi.org/10.1186/1756-0500-6-91openalex-snapshot
Comparison of microbial populations in the small intestine, large intestine and feces of healthy horses using terminal restriction fragment length polymorphism
inferred← citeshttps://doi.org/10.1186/s12866-015-0514-5openalex-snapshot
Faecal microbiota characterisation of horses using 16 rdna barcoded pyrosequencing, and carriage rate of clostridium difficile at hospital admission
inferred← citeshttps://doi.org/10.1186/s12866-016-0758-8openalex-snapshot
High-throughput sequencing of 16S rRNA Gene Reveals Substantial Bacterial Diversity on the Municipal Dumpsite
inferred← citeshttps://doi.org/10.1186/s12866-023-02986-8openalex-snapshot
Gut microbiota changes in horses with Chlamydia
inferred← citeshttps://doi.org/10.1186/s12917-015-0335-7openalex-snapshot
Changes in the equine fecal microbiota associated with the use of systemic antimicrobial drugs
inferred← citeshttps://doi.org/10.1186/s12917-017-1064-xopenalex-snapshot
Comparison of the fecal bacterial microbiota of healthy and diarrheic foals at two and four weeks of life
inferred← citeshttps://doi.org/10.1186/s12917-018-1464-6openalex-snapshot
Comparison of the fecal microbiota of domestic commercial meat, laboratory, companion, and shelter rabbits (Oryctolagus cuniculi)
inferred← citeshttps://doi.org/10.1186/s12917-020-02563-5openalex-snapshot
Effects of long-distance transportation on blood constituents and composition of the nasal microbiota in healthy donkeys
inferred← citeshttps://doi.org/10.1186/s12917-020-02706-8openalex-snapshot
Experimental crossover study on the effects of withholding feed for 24 h on the equine faecal bacterial microbiota in healthy mares
inferred← citeshttps://doi.org/10.1186/s12917-021-02994-8openalex-snapshot
Effects of steam-flaked grains on foals’ growth and faecal microbiota
inferred← citeshttps://doi.org/10.1186/s12917-022-03510-2openalex-snapshot
Effects of different grains on bacterial diversity and enzyme activity associated with digestion of starch in the foal stomach
inferred← citeshttps://doi.org/10.1186/s12917-023-03864-1openalex-snapshot
Comparing microbiotas of foals and their mares’ milk in the first two weeks after birth
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