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A Cross-Platform Comparison of Affymetrix and Agilent Microarrays Reveals Discordant miRNA Expression in Lung Tumors of c-Raf Transgenic Mice
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1 of the 68 references listed on this page is in the Retraction Watch database as retracted (export 2026-10-28): 10.1074/jbc.m804788200 (notice 2018-07-19).
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Identification of the regulatory phosphorylation sites in pp42/mitogen‐activated protein kinase (MAP kinase).
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Identification of the sites in MAP kinase kinase‐1 phosphorylated by p74raf‐1.
inferredcites →https://doi.org/10.1002/pmic.200500188openalex-snapshot
Towards a lung adenocarcinoma proteome map: Studies with SP‐C/c‐raf transgenic mice
inferredcites →https://doi.org/10.1002/pmic.200700290openalex-snapshot
Serum proteomics of lung adenocarcinomas induced by targeted overexpression of c‐raf in alveolar epithelium identifies candidate biomarkers
inferredcites →https://doi.org/10.1007/978-1-60761-175-2_20openalex-snapshot
ArrayTrack: An FDA and Public Genomic Tool
inferredcites →https://doi.org/10.1016/j.ccr.2006.01.025openalex-snapshot
Unique microRNA molecular profiles in lung cancer diagnosis and prognosis
inferredcites →https://doi.org/10.1016/j.ccr.2010.08.013openalex-snapshot
Modulation of K-Ras-Dependent Lung Tumorigenesis by MicroRNA-21
inferredcites →https://doi.org/10.1016/j.cell.2004.12.035openalex-snapshot
Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets
inferredcites →https://doi.org/10.1016/j.cell.2009.01.035openalex-snapshot
Origins and Mechanisms of miRNAs and siRNAs
inferredcites →https://doi.org/10.1016/j.jaci.2011.08.011openalex-snapshot
Transcriptome analysis shows activation of circulating CD8+ T cells in patients with severe asthma
inferredcites →https://doi.org/10.1016/j.molcel.2007.06.017openalex-snapshot
MicroRNA Targeting Specificity in Mammals: Determinants beyond Seed Pairing
inferredcites →https://doi.org/10.1016/j.molcel.2010.07.023openalex-snapshot
STAT3 Activation of miR-21 and miR-181b-1 via PTEN and CYLD Are Part of the Epigenetic Switch Linking Inflammation to Cancer
inferredcites →https://doi.org/10.1016/j.tcb.2006.12.007openalex-snapshot
Repression of protein synthesis by miRNAs: how many mechanisms?
inferredcites →https://doi.org/10.1016/s0955-0674(97)80060-9openalex-snapshot
The complexity of Raf-1 regulation
inferredcites →https://doi.org/10.1021/bi00035a029openalex-snapshot
Thermodynamic Parameters To Predict Stability of RNA/DNA Hybrid Duplexes
inferredcites →https://doi.org/10.1038/nbt1210-1248openalex-snapshot
Towards a knowledge-based Human Protein Atlas
inferredcites →https://doi.org/10.1038/ng2135openalex-snapshot
The role of site accessibility in microRNA target recognition
inferredcites →https://doi.org/10.1038/nrg3198openalex-snapshot
MicroRNA profiling: approaches and considerations
inferredcites →https://doi.org/10.1038/nrm2347openalex-snapshot
Small non-coding RNAs in animal development
inferredcites →https://doi.org/10.1038/onc.2010.416openalex-snapshot
Upregulation of miR-21 by Ras in vivo and its role in tumor growth
inferredcites →https://doi.org/10.1038/onc.2011.570openalex-snapshot
Involvement of the SKP2–p27KIP1 pathway in suppression of cancer cell proliferation by RECK
inferredcites →https://doi.org/10.1038/sj.onc.1209912openalex-snapshot
miRNAs and apoptosis: RNAs to die for
inferredcites →https://doi.org/10.1073/pnas.0509603102openalex-snapshot
The role of microRNA genes in papillary thyroid carcinoma
inferredcites →https://doi.org/10.1073/pnas.0510565103openalex-snapshot
A microRNA expression signature of human solid tumors defines cancer gene targets
inferredcites →https://doi.org/10.1073/pnas.0605298103openalex-snapshot
NF-κB-dependent induction of microRNA miR-146, an inhibitor targeted to signaling proteins of innate immune responses
inferredcites →https://doi.org/10.1073/pnas.0707628104openalex-snapshot
MicroRNA-29 family reverts aberrant methylation in lung cancer by targeting DNA methyltransferases 3A and 3B
inferredcites →https://doi.org/10.1073/pnas.0905234106openalex-snapshot
MiR-21 is an EGFR-regulated anti-apoptotic factor in lung cancer in never-smokers
inferredcites →https://doi.org/10.1073/pnas.1100048108openalex-snapshot
MicroRNA signatures in tissues and plasma predict development and prognosis of computed tomography detected lung cancer
inferredcites →https://doi.org/10.1073/pnas.242606799openalex-snapshot
Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia
inferredcites →https://doi.org/10.1074/jbc.m111.285098openalex-snapshot
MicroRNA miR-21 Regulates the Metastatic Behavior of B16 Melanoma Cells
inferredcites →https://doi.org/10.1074/jbc.m804788200openalex-snapshot
Down-regulation of Micro-RNA-1 (miR-1) in Lung Cancer: Suppression of Tumorigenic Property of Lung Cancer Cells and Their Sensitization to Doxorubicin-Induced Apoptosis by miR-1
inferredcites →https://doi.org/10.1093/nar/gkm260openalex-snapshot
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments
inferredcites →https://doi.org/10.1093/nar/gkn133openalex-snapshot
A study of the relationships between oligonucleotide properties and hybridization signal intensities from NimbleGen microarray datasets
inferredcites →https://doi.org/10.1097/pas.0b013e3182068171openalex-snapshot
miR-205 Expression Levels in Nonsmall Cell Lung CancerDo Not Always Distinguish Adenocarcinomas From Squamous Cell Carcinomas
inferredcites →https://doi.org/10.1101/gr.082701.108openalex-snapshot
Most mammalian mRNAs are conserved targets of microRNAs
inferredcites →https://doi.org/10.1111/j.1365-2796.2011.02427.xopenalex-snapshot
The Human Protein Atlas as a proteomic resource for biomarker discovery
inferredcites →https://doi.org/10.1111/j.1582-4934.2009.00696.xopenalex-snapshot
MicroRNAs and micromanaging the skeleton in disease, development and evolution
inferredcites →https://doi.org/10.1152/physiolgenomics.90268.2008openalex-snapshot
MicroRNA-127 modulates fetal lung development
inferredcites →https://doi.org/10.1158/0008-5472.can-04-0637openalex-snapshot
Reduced Expression of the let-7 MicroRNAs in Human Lung Cancers in Association with Shortened Postoperative Survival
inferredcites →https://doi.org/10.1158/0008-5472.can-05-1783openalex-snapshot
MicroRNA Gene Expression Deregulation in Human Breast Cancer
inferredcites →https://doi.org/10.1158/0008-5472.can-09-0587openalex-snapshot
MicroRNA Classifiers for Predicting Prognosis of Squamous Cell Lung Cancer
inferredcites →https://doi.org/10.1183/09031936.00084108openalex-snapshot
Evolution of microRNA expression during human bronchial squamous carcinogenesis
inferredcites →https://doi.org/10.1186/1471-213x-13-13openalex-snapshot
miRNA regulated pathways in late stage murine lung development
inferredcites →https://doi.org/10.1186/1471-2164-10-407openalex-snapshot
Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis
inferredcites →https://doi.org/10.1186/1471-2164-11-330openalex-snapshot
Cross-platform analysis of global microRNA expression technologies
inferredcites →https://doi.org/10.1186/1472-6750-8-69openalex-snapshot
Measuring microRNAs: Comparisons of microarray and quantitative PCR measurements, and of different total RNA prep methods
inferredcites →https://doi.org/10.1186/1756-0500-3-80openalex-snapshot
Performance evaluation of commercial miRNA expression array platforms
inferredcites →https://doi.org/10.1210/en.138.10.4131openalex-snapshot
Signal Transducer and Activator of Transcription-3 Serine Phosphorylation by Insulin Is Mediated by a Ras/Raf/MEK-Dependent Pathway
inferredcites →https://doi.org/10.1261/rna.036475.112openalex-snapshot
Differences in microRNA detection levels are technology and sequence dependent
inferredcites →https://doi.org/10.1261/rna.1699809openalex-snapshot
Quantitative miRNA expression analysis: Comparing microarrays with next-generation sequencing
inferredcites →https://doi.org/10.1261/rna.1947110openalex-snapshot
Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression
inferredcites →https://doi.org/10.1261/rna.234507openalex-snapshot
Direct and sensitive miRNA profiling from low-input total RNA
inferredcites →https://doi.org/10.1261/rna.939908openalex-snapshot
Normalization of microRNA expression levels in quantitative RT-PCR assays: Identification of suitable reference RNA targets in normal and cancerous human solid tissues
inferredcites →https://doi.org/10.1371/journal.pmed.0020013openalex-snapshot
Gene Mutations in Lung Cancer: Promising Predictive Factors for the Success of Molecular Therapy
inferredcites →https://doi.org/10.1371/journal.pone.0005540openalex-snapshot
Intra-Platform Repeatability and Inter-Platform Comparability of MicroRNA Microarray Technology
inferredcites →https://doi.org/10.1371/journal.pone.0005637openalex-snapshot
Molecular Characterization of Lung Dysplasia Induced by c-Raf-1
inferredcites →https://doi.org/10.1371/journal.pone.0007315openalex-snapshot
Cancer Genomics Identifies Regulatory Gene Networks Associated with the Transition from Dysplasia to Advanced Lung Adenocarcinomas Induced by c-Raf-1
inferredcites →https://doi.org/10.1371/journal.pone.0007829openalex-snapshot
A Conserved Gene Structure and Expression Regulation of miR-433 and miR-127 in Mammals
inferredcites →https://doi.org/10.1371/journal.pone.0010854openalex-snapshot
MicroRNA Networks in Mouse Lung Organogenesis
inferredcites →https://doi.org/10.1371/journal.pone.0022379openalex-snapshot
Overexpression of the Lung Cancer-Prognostic miR-146b MicroRNAs Has a Minimal and Negative Effect on the Malignant Phenotype of A549 Lung Cancer Cells
inferredcites →https://doi.org/10.1371/journal.pone.0045105openalex-snapshot
Comparison of Microarray Platforms for Measuring Differential MicroRNA Expression in Paired Normal/Cancer Colon Tissues
inferredcites →https://doi.org/10.1371/journal.pone.0052517openalex-snapshot
Multi-Platform Analysis of MicroRNA Expression Measurements in RNA from Fresh Frozen and FFPE Tissues
inferredcites →https://doi.org/10.2144/000113367openalex-snapshot
Concordance among digital gene expression, microarrays, and qPCR when measuring differential expression of microRNAs
inferredcites →https://doi.org/10.2144/03342mt01openalex-snapshot
TM4: A Free, Open-Source System for Microarray Data Management and Analysis
inferredcites →https://doi.org/10.4049/jimmunol.0803560openalex-snapshot
MicroRNA-21 Is Up-Regulated in Allergic Airway Inflammation and Regulates IL-12p35 Expression
inferredcites →https://doi.org/10.4049/jimmunol.180.8.5689openalex-snapshot
Rapid Changes in MicroRNA-146a Expression Negatively Regulate the IL-1β-Induced Inflammatory Response in Human Lung Alveolar Epithelial Cells
inferredcites →https://doi.org/10.4161/cc.7.20.6833openalex-snapshot
Control of cell proliferation pathways by microRNAs
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.4781335openalex-extracted
The Abl1 Tyrosine Kinase and p53 are Key Players in Doxorubicin-Induced Cardiomyopathy and Their Cell Death Signaling Differs in Atrial and Ventricular Cardiomyocytes
inferred← citeshttps://doi.org/10.1002/ange.201409489openalex-snapshot
Sensitive and Multiplexed On‐chip microRNA Profiling in Oil‐Isolated Hydrogel Chambers
inferred← citeshttps://doi.org/10.1002/anie.201409489openalex-snapshot
Sensitive and Multiplexed On‐chip microRNA Profiling in Oil‐Isolated Hydrogel Chambers
inferred← citeshttps://doi.org/10.1002/cam4.409openalex-snapshot
Overexpression of the microRNA miR‐433 promotes resistance to paclitaxel through the induction of cellular senescence in ovarian cancer cells
inferred← citeshttps://doi.org/10.1002/mc.22249openalex-snapshot
PTN signaling: Components and mechanistic insights in human ovarian cancer
inferred← citeshttps://doi.org/10.1007/4243_2018_4openalex-snapshot
Time-Gated Luminescence Acquisition for Biochemical Sensing: miRNA Detection
inferred← citeshttps://doi.org/10.1007/s00204-023-03671-5openalex-snapshot
Sex differences in the tumor promoting effects of tobacco smoke in a cRaf transgenic lung cancer disease model
inferred← citeshttps://doi.org/10.1007/s11105-014-0716-2openalex-snapshot
miRNA-Mediated Posttranscriptional Regulation of Gene Expression in ABR17-Transgenic Arabidopsis thaliana Under Salt Stress
inferred← citeshttps://doi.org/10.1007/s13277-016-5050-xopenalex-snapshot
Understanding the CREB1-miRNA feedback loop in human malignancies
inferred← citeshttps://doi.org/10.1016/j.biopha.2016.05.003openalex-snapshot
MiR-433 inhibits retinoblastoma malignancy by suppressing Notch1 and PAX6 expression
inferred← citeshttps://doi.org/10.1016/j.bios.2016.05.010openalex-snapshot
Tension promoted circular probe for highly selective microRNA detection and imaging
inferred← citeshttps://doi.org/10.1016/j.ebiom.2023.104763openalex-snapshot
Sex disparities in non-small cell lung cancer: mechanistic insights from a cRaf transgenic disease model
inferred← citeshttps://doi.org/10.1016/j.gene.2019.03.031openalex-snapshot
MicroRNA 4651 regulates nonsense-mediated mRNA decay by targeting SMG9 mRNA
inferred← citeshttps://doi.org/10.1016/j.jid.2018.03.1500openalex-snapshot
MicroRNA Signatures in Diagnosis and Prognosis of Cutaneous T-Cell Lymphoma
inferred← citeshttps://doi.org/10.1016/j.mito.2023.11.004openalex-snapshot
Identifying the mitochondrial metabolism network by integration of machine learning and explainable artificial intelligence in skeletal muscle in type 2 diabetes
inferred← citeshttps://doi.org/10.1016/j.snb.2024.136136openalex-snapshot
Multiplexed MicroRNA biomarker detection by bridging lifetime filtering imaging and dynamic chemical labeling
inferred← citeshttps://doi.org/10.1016/j.trsl.2016.06.003openalex-snapshot
Genomics of human fatty liver disease reveal mechanistically linked lipid droplet–associated gene regulations in bland steatosis and nonalcoholic steatohepatitis
inferred← citeshttps://doi.org/10.1038/s41598-022-08737-5openalex-snapshot
Evidence of antagonistic predictive effects of miRNAs in breast cancer cohorts through data-driven networks
inferred← citeshttps://doi.org/10.1038/s41598-025-10044-8openalex-snapshot
Human umbilical vein endothelial cell miRNA secretome highlights endothelial origin of serum miRNAs
inferred← citeshttps://doi.org/10.1039/c6cc07719fopenalex-snapshot
Highly sensitive and selective miRNA detection based on a closed ring probe and multiple signal amplification
inferred← citeshttps://doi.org/10.1039/c8cc08849gopenalex-snapshot
Imaging of intracellular-specific microRNA in tumor cells by symmetric exponential amplification-assisted fluorescence in situ hybridization
inferred← citeshttps://doi.org/10.1039/c9cc08069dopenalex-snapshot
miR-122 direct detection in human serum by time-gated fluorescence imaging
inferred← citeshttps://doi.org/10.1152/ajpgi.00339.2018openalex-snapshot
Multitranscriptome analyses reveal prioritized genes specifically associated with liver fibrosis progression independent of etiology
inferred← citeshttps://doi.org/10.1186/s12859-019-3050-8openalex-snapshot
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection
inferred← citeshttps://doi.org/10.1186/s12859-023-05266-4openalex-snapshot
Genealyzer: web application for the analysis and comparison of gene expression data
inferred← citeshttps://doi.org/10.1186/s12867-016-0070-zopenalex-snapshot
MicroRNA 433 regulates nonsense-mediated mRNA decay by targeting SMG5 mRNA
inferred← citeshttps://doi.org/10.1186/s12920-018-0438-7openalex-snapshot
Genomics of lipid-laden human hepatocyte cultures enables drug target screening for the treatment of non-alcoholic fatty liver disease
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The Abl1 tyrosine kinase is a key player in doxorubicin-induced cardiomyopathy and its p53/p73 cell death mediated signaling differs in atrial and ventricular cardiomyocytes
inferred← citeshttps://doi.org/10.1186/s13148-023-01500-1openalex-snapshot
Combined inhibition of histone deacetylase and cytidine deaminase improves epigenetic potency of decitabine in colorectal adenocarcinomas
inferred← citeshttps://doi.org/10.1364/boe.10.000682openalex-snapshot
Automated smFRET microscope for the quantification of label-free DNA oligos
inferred← citeshttps://doi.org/10.1371/journal.pone.0164295openalex-snapshot
Cross-Species Analysis of Gene Expression and Function in Prefrontal Cortex, Hippocampus and Striatum
inferred← citeshttps://doi.org/10.1371/journal.pone.0191195openalex-snapshot
Differential microRNA expression in breast cancer with different onset age
inferred← citeshttps://doi.org/10.1515/folmed-2015-0035openalex-snapshot
Circulating microRNAs as a Novel Class of Potential Diagnostic Biomarkers in Neuropsychiatric Disorders
inferred← citeshttps://doi.org/10.21203/rs.3.rs-2599586/v1openalex-snapshot
Mechanistic insight into sex differences in lung cancer induced by cRaf
inferred← citeshttps://doi.org/10.21873/invivo.12803openalex-snapshot
Identification of Stably Expressed Reference microRNAs in Epithelial Ovarian Cancer
inferred← citeshttps://doi.org/10.26508/lsa.202503341openalex-snapshot
Mutual feedback regulation between Poly(A)-specific ribonuclease (PARN) and cognate microRNAs
inferred← citeshttps://doi.org/10.3389/fpls.2018.00023openalex-snapshot
GSHR, a Web-Based Platform Provides Gene Set-Level Analyses of Hormone Responses in Arabidopsis
inferred← citeshttps://doi.org/10.3389/fpls.2020.00147openalex-snapshot
Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments
inferred← citeshttps://doi.org/10.3390/cancers12071785openalex-snapshot
Machine Learning-Based Ensemble Recursive Feature Selection of Circulating miRNAs for Cancer Tumor Classification
inferred← citeshttps://doi.org/10.3390/cancers17162715openalex-snapshot
Amplification-Free Testing of microRNA Biomarkers in Cancer
inferred← citeshttps://doi.org/10.3390/ijms22031176openalex-snapshot
Measurements Methods for the Development of MicroRNA-Based Tests for Cancer Diagnosis
inferred← citeshttps://doi.org/10.3892/ol.2018.7803openalex-snapshot
MicroRNA-433 targets AKT3 and inhibits cell proliferation and viability in breast cancer
inferred← citeshttps://doi.org/10.4137/cin.s14055openalex-snapshot
Integrated DNA Copy Number and Gene Expression Regulatory Network Analysis of Non-small Cell Lung Cancer Metastasis
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MicroRNAs as lung cancer biomarkers
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