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Effects of Mitochondrial DNA Rate Variation on Reconstruction of Pleistocene Demographic History in a Social Avian Species, Pomatostomus superciliosus

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1 of the 83 references listed on this page is in the Retraction Watch database as retracted (export 2026-10-28): 10.1186/1471-2148-4-18 (notice 2015-11-05).

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Neutral theory of molecular evolution
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Ecological constraints, life history traits and the evolution of cooperative breeding
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A study of the genetic relationships within and among wolf packs using DNA fingerprinting and mitochondrial DNA
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Rapid Rate of Control-Region Evolution in Pacific Butterflyfishes (Chaetodontidae)
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Genetic Divergence of Orangutan Subspecies (Pongo pygmaeus)
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Among-site rate variation and its impact on phylogenetic analyses
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Population genetics meets behavioral ecology
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Temporal Environmental Variability Drives the Evolution of Cooperative Breeding in Birds
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Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers
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Cenozoic climatic change and the development of the arid vegetation in Australia
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Quantitative reconstruction of Early Pleistocene climate in southeastern Australia and implications for atmospheric circulation
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Molecular clocks: when timesare a-changin'
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Speciation dynamics in the Australo-Papuan Meliphaga honeyeaters
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Effects of selection and mutation on mitochondrial variation and inferences of historical population expansion in a Caribbean reef fish
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Plumage patterns are good indicators of taxonomic diversity, but not of phylogenetic affinities, in Australian grasswrens Amytornis (Aves: Maluridae)
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A multigene phylogeny examining evolutionary and ecological relationships in the Australo-papuan wrens of the subfamily Malurinae (Aves)
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The influence of social behaviour, dispersal and landscape fragmentation on population structure in a sedentary bird
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The timing of the Last Glacial Maximum in Australia
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The Neutral Theory of Molecular Evolution
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Cryptic differentiation and geographic variation in genetic diversity of Hall's Babbler Pomatostomus halli
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Eight glacial cycles from an Antarctic ice core
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Molecular Data Confirms the Species Status of the Christmas Island Hawk-Owl Ninox natalis
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The spatial dynamics of White-browed Babbler groups in a fragmented agricultural landscape
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Dating the genetic bottleneck of the African cheetah.
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Bayes Factors
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Evidence for Time Dependency of Molecular Rate Estimates
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DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
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Average Number of Nucleotide Differences in a Sample From a Single Subpopulation: A Test for Population Subdivision
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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
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Phylogenetically informative length polymorphism and sequence variability in mitochondrial DNA of Australian songbirds (Pomatostomus).
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Influence of gene flow and breeding tactics on gene diversity within populations.
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Properties of statistical tests of neutrality for DNA polymorphism data.
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Statistical Tests of Neutrality of Mutations Against Population Growth, Hitchhiking and Background Selection
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Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences
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A Mitogenomic Timescale for Birds Detects Variable Phylogenetic Rates of Molecular Evolution and Refutes the Standard Molecular Clock
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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0
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Measuring the Sensitivity of Single-locus "Neutrality Tests" Using a Direct Perturbation Approach
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Bayesian Phylogenetics with BEAUti and the BEAST 1.7
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Statistical Properties of New Neutrality Tests Against Population Growth
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Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
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MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Long-distance gene flow in a cooperative breeder detected in genealogies of mitochondrial DNA sequences
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Factors affecting levels of genetic diversity in natural populations
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A new look at the statistical model identification
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IS THE POPULATION SIZE OF A SPECIES RELEVANT TO ITS EVOLUTION?
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Application of molecular clocks in ornithology revisited
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The absence of sex-biased dispersal in the cooperatively breeding grey-crowned babbler
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Biogeographical history of cuckoo‐shrikes (Aves: Passeriformes): transoceanic colonization of Africa from Australo‐Papua
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Evolutionary history of the honey bee Apis mellifera inferred from mitochondrial DNA analysis
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03742.xopenalex-snapshot
Calibrating the avian molecular clock
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05178.xopenalex-snapshot
Time-dependent rates of molecular evolution
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05330.xopenalex-snapshot
Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: did mangrove habitats maintain genetic connectivity in the Black Butcherbird?
inferredcites →https://doi.org/10.1111/j.1469-7998.2007.00332.xopenalex-snapshot
Reproductive success and helper effects in the cooperatively breeding grey‐crowned babbler
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COMPARATIVE METHODS AT THE SPECIES LEVEL: GEOGRAPHIC VARIATION IN MORPHOLOGY AND GROUP SIZE IN GREY‐CROWNED BABBLERS (POMATOSTOMUS TEMPORALIS)
inferredcites →https://doi.org/10.1111/j.1600-0587.2010.06167.xopenalex-snapshot
Phylogeny and biogeography of Oriolidae (Aves: Passeriformes)
inferredcites →https://doi.org/10.1111/j.1755-0998.2011.03021.xopenalex-snapshot
Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data
inferredcites →https://doi.org/10.1126/science.1122033openalex-snapshot
Population Size Does Not Influence Mitochondrial Genetic Diversity in Animals
inferredcites →https://doi.org/10.1186/1471-2105-14-85openalex-snapshot
Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution
inferredcites →https://doi.org/10.1186/1471-2148-4-18openalex-snapshot
RETRACTED ARTICLE: TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics
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Mitogenome Phylogenetics: The Impact of Using Single Regions and Partitioning Schemes on Topology, Substitution Rate and Divergence Time Estimation
inferredcites →https://doi.org/10.1371/journal.pone.0046403openalex-snapshot
Contrasting Evolutionary Dynamics and Information Content of the Avian Mitochondrial Control Region and ND2 Gene
inferredcites →https://doi.org/10.1534/genetics.107.083006openalex-snapshot
Statistical Power Analysis of Neutrality Tests Under Demographic Expansions, Contractions and Bottlenecks With Recombination
inferredcites →https://doi.org/10.2307/1370012openalex-snapshot
Molecular Systematics of the Rhinocryptid Genus Pteroptochos
inferredcites →https://doi.org/10.2307/2410438openalex-snapshot
Comparative Methods at the Species Level: Geographic Variation in Morphology and Group Size in Grey-Crowned Babblers (Pomatostomus temporalis)
inferredcites →https://doi.org/10.2307/j.ctv1nzfgj7openalex-snapshot
Phylogeography
inferredcites →https://doi.org/10.26181/21843969openalex-snapshot
Habitat use by white-browed babblers Pomatostomus Superciliosus in box-ironbark forest in south-east Australia
inferredcites →https://doi.org/10.26749/sjne4319openalex-snapshot
Pleistocene glaciation in Tasmania
inferredcites →https://doi.org/10.5860/choice.37-5647openalex-snapshot
Phylogeography: the history and formation of species

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Ecological and evolutionary diversification in the Australo-Papuan scrubwrens (Sericornis) and mouse-warblers (Crateroscelis), with a revision of the subfamily Sericornithinae (Aves: Passeriformes: Acanthizidae)
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Morphological and molecular phylogenetic characterization of Sarcocystis kani sp. nov. and other novel, closely related Sarcocystis spp. infecting small mammals and colubrid snakes in Asia
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Genomic data show little geographical structure across the naturally fragmented range of the purple-gaped honeyeater
inferred← citeshttps://doi.org/10.1080/01584197.2017.1411765openalex-snapshot
Mitogenomic and nuclear diversity in the Mulga Parrot of the Australian arid zone: cryptic subspecies and tests for selection
inferred← citeshttps://doi.org/10.1186/s12862-016-0798-6openalex-snapshot
Multi-locus sequence data illuminate demographic drivers of Pleistocene speciation in semi-arid southern Australian birds (Cinclosoma spp.)
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A cyst-forming coccidian with large geographical range infecting forest and commensal rodents: Sarcocystis muricoelognathis sp. nov.
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Peripheral isolation and demographic stability are reflected in the genetic diversity of the populations of the Helmeted Manakin: a bird endemic to the gallery forests
inferred← citeshttps://doi.org/10.6084/m9.figshare.26694036openalex-snapshot
Additional file 1 of A cyst-forming coccidian with large geographical range infecting forest and commensal rodents: Sarcocystis muricoelognathis sp. nov.
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