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An Evolutionary Analysis of the Secoviridae Family of Viruses
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches
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Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
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A new potato virus in a new lineage of picorna-like viruses
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Rupestris stem pitting associated virus isolates are composed by mixtures of genomic variants which share a highly conserved coat protein
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Identification and characterisation of tomato torrado virus, a new plant picorna-like virus from tomato
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Tomato marchitez virus, a new plant picorna-like virus from tomato related to tomato torrado virus
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Picornavirales, a proposed order of positive-sense single-stranded RNA viruses with a pseudo-T = 3 virion architecture
inferredcites →https://doi.org/10.1007/s00705-008-0182-yopenalex-snapshot
Multiple interspecies recombination events within RNA2 of Grapevine fanleaf virus and Arabis mosaic virus
inferredcites →https://doi.org/10.1007/s00705-009-0367-zopenalex-snapshot
Secoviridae: a proposed family of plant viruses within the order Picornavirales that combines the families Sequiviridae and Comoviridae, the unassigned genera Cheravirus and Sadwavirus, and the proposed genus Torradovirus
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Genetic variation and evolutionary analysis of broad bean wilt virus 2
inferredcites →https://doi.org/10.1007/s007050070118openalex-snapshot
Genetic diversity of rice tungro spherical virus in tungro-endemic provinces of the Philippines and Indonesia
inferredcites →https://doi.org/10.1007/s11262-012-0765-2openalex-snapshot
Complete nucleotide sequence of a South African isolate of Grapevine fanleaf virus
inferredcites →https://doi.org/10.1016/b978-0-12-384984-7.00005-1openalex-snapshot
RNA Viruses Infecting Pest Insects
inferredcites →https://doi.org/10.1016/j.coviro.2012.10.001openalex-snapshot
Coat proteins, host factors and plant viral replication
inferredcites →https://doi.org/10.1016/j.jviromet.2007.01.014openalex-snapshot
An improved detection method for the Rhopalosiphum padi virus (RhPV) allows monitoring of its presence in aphids and movement within plants
inferredcites →https://doi.org/10.1016/j.virusres.2006.06.001openalex-snapshot
A virus between families: nucleotide sequence and evolution of Strawberry latent ringspot virus
inferredcites →https://doi.org/10.1016/j.virusres.2009.04.018openalex-snapshot
Genetic structure and variability of virus populations in cross-protected grapevines superinfected by Grapevine fanleaf virus
inferredcites →https://doi.org/10.1016/j.virusres.2010.05.017openalex-snapshot
Genetic structure and molecular variability of Grapevine fanleaf virus populations
inferredcites →https://doi.org/10.1016/j.virusres.2011.08.006openalex-snapshot
Genomic analysis of Grapevine leafroll associated virus-5 and related viruses
inferredcites →https://doi.org/10.1016/j.virusres.2012.03.011openalex-snapshot
Grapevine deformation virus: Completion of the sequence and evidence on its origin from recombination events between Grapevine fanleaf virus and Arabis mosaic virus
inferredcites →https://doi.org/10.1016/j.ympev.2011.09.003openalex-snapshot
Dating the arthropod tree based on large-scale transcriptome data
inferredcites →https://doi.org/10.1016/s0065-3527(06)66001-6openalex-snapshot
Spread of Plant Virus Disease to New Plantings: A Case Study of Rice Tungro Disease
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Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1021/bi3016185openalex-snapshot
A Population-Based Experimental Model for Protein Evolution: Effects of Mutation Rate and Selection Stringency on Evolutionary Outcomes
inferredcites →https://doi.org/10.1038/nrg2323openalex-snapshot
Rates of evolutionary change in viruses: patterns and determinants
inferredcites →https://doi.org/10.1038/nrmicro2030openalex-snapshot
The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups
inferredcites →https://doi.org/10.1073/pnas.081288198openalex-snapshot
Systemic spread of an RNA insect virus in plants expressing plant viral movement protein genes
inferredcites →https://doi.org/10.1073/pnas.96.14.8022openalex-snapshot
Evidence that a plant virus switched hosts to infect a vertebrate and then recombined with a vertebrate-infecting virus
inferredcites →https://doi.org/10.1093/bioinformatics/bti079openalex-snapshot
HyPhy: hypothesis testing using phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/bti320openalex-snapshot
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments
inferredcites →https://doi.org/10.1093/bioinformatics/btl474openalex-snapshot
GARD: a genetic algorithm for recombination detection
inferredcites →https://doi.org/10.1093/bioinformatics/btq467openalex-snapshot
RDP3: a flexible and fast computer program for analyzing recombination
inferredcites →https://doi.org/10.1093/jhered/92.4.371openalex-snapshot
DAMBE: Software Package for Data Analysis in Molecular Biology and Evolution
inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot
jModelTest: Phylogenetic Model Averaging
inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
inferredcites →https://doi.org/10.1093/molbev/msr125openalex-snapshot
A Random Effects Branch-Site Model for Detecting Episodic Diversifying Selection
inferredcites →https://doi.org/10.1093/molbev/msr266openalex-snapshot
Inconsistencies in Estimating the Age of HIV-1 Subtypes Due to Heterotachy
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mst030openalex-snapshot
FUBAR: A Fast, Unconstrained Bayesian AppRoximation for Inferring Selection
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004059openalex-snapshot
Reduced Positive Selection in Vector-Borne RNA Viruses
inferredcites →https://doi.org/10.1094/phyto-01-13-0013-ropenalex-snapshot
Selection Pressure and Founder Effects Constrain Genetic Variation in Differentiated Populations of Soilborne Bymovirus Wheat yellow mosaic virus (Potyviridae) in China
inferredcites →https://doi.org/10.1094/phyto-78-811openalex-snapshot
Barley and Oats as Reservoirs for an Aphid Virus and the Influence on Barley Yellow Dwarf Virus Transmission
inferredcites →https://doi.org/10.1094/phyto-97-10-1255openalex-snapshot
Molecular Characterization of Naturally Occurring RNA1 Recombinants of the Comovirus Bean pod mottle virus
inferredcites →https://doi.org/10.1094/phyto-99-12-1394openalex-snapshot
Genome Diversity and Intra- and Interspecies Recombination Events in Grapevine fanleaf virus
inferredcites →https://doi.org/10.1098/rspb.2013.0965openalex-snapshot
Suppressors of RNAi from plant viruses are subject to episodic positive selection
inferredcites →https://doi.org/10.1099/0022-1317-76-5-1285openalex-snapshot
Transfer of the 3' non-translated region of grapevine chrome mosaic virus RNA-1 by recombination to tomato black ring virus RNA-2 in pseudorecombinant isolates
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Nucleotide sequences and taxonomy of satsuma dwarf virus.
inferredcites →https://doi.org/10.1099/0022-1317-81-1-257openalex-snapshot
The ‘30K’ superfamily of viral movement proteins
inferredcites →https://doi.org/10.1099/0022-1317-81-2-541openalex-snapshot
Nucleotide sequence and genome organization of Apple latent spherical virus: a new virus classified into the family Comoviridae
inferredcites →https://doi.org/10.1099/0022-1317-83-1-229openalex-snapshot
Characterization and complete nucleotide sequence of Strawberry mottle virus: a tentative member of a new family of bipartite plant picorna-like viruses
inferredcites →https://doi.org/10.1099/vir.0.015925-0openalex-snapshot
Time - the emerging dimension of plant virus studies
inferredcites →https://doi.org/10.1099/vir.0.016089-0openalex-snapshot
Recombination and selection pressure in the ipomovirus sweet potato mild mottle virus (Potyviridae) in wild species and cultivated sweetpotato in the centre of evolution in East Africa
inferredcites →https://doi.org/10.1099/vir.0.034702-0openalex-snapshot
The remarkable evolutionary history of endornaviruses
inferredcites →https://doi.org/10.1099/vir.0.79904-0openalex-snapshot
Population structure and genetic variability within isolates of Grapevine fanleaf virus from a naturally infected vineyard in France: evidence for mixed infection and recombination
inferredcites →https://doi.org/10.1099/vir.0.80134-0openalex-snapshot
Selection pressures in the capsid genes of plant RNA viruses reflect mode of transmission
inferredcites →https://doi.org/10.1111/j.1365-2583.1994.tb00154.xopenalex-snapshot
Evolutionary origin of whiteflies (Hemiptera: Sternorrhyncha: Aleyrodidae) inferred from 18S rDNA sequences
inferredcites →https://doi.org/10.1111/j.1439-0434.2009.01639.xopenalex-snapshot
Occurrence and Geographical Distribution of the ‘Torrado’ Disease in Spain
inferredcites →https://doi.org/10.1128/jvi.02160-09openalex-snapshot
Long-Term Evolution of theLuteoviridae: Time Scale and Mode of Virus Speciation
inferredcites →https://doi.org/10.1128/jvi.02535-10openalex-snapshot
Genus-Specific Substitution Rate Variability among Picornaviruses
inferredcites →https://doi.org/10.1128/jvi.77.15.8181-8186.2003openalex-snapshot
Host Factors in Positive-Strand RNA Virus Genome Replication
inferredcites →https://doi.org/10.1128/mbio.00898-13openalex-snapshot
Systemic Spread and Propagation of a Plant-Pathogenic Virus in European Honeybees, Apis mellifera
inferredcites →https://doi.org/10.1146/annurev.ecolsys.110308.120248openalex-snapshot
The Evolutionary Genetics of Emerging Viruses
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1371/journal.pcbi.1000377openalex-snapshot
Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2
inferredcites →https://doi.org/10.1371/journal.pone.0002523openalex-snapshot
The Prehistory of Potyviruses: Their Initial Radiation Was during the Dawn of Agriculture
inferredcites →https://doi.org/10.1371/journal.ppat.1000125openalex-snapshot
Diversification of Rice Yellow Mottle Virus and Related Viruses Spans the History of Agriculture from the Neolithic to the Present
inferredcites →https://doi.org/10.1371/journal.ppat.1002786openalex-snapshot
Molecular Inferences Suggest Multiple Host Shifts of Rabies Viruses from Bats to Mesocarnivores in Arizona during 2001–2009
inferredcites →https://doi.org/10.3109/10409239309078440openalex-snapshot
Evolution and Taxonomy of Positive-Strand RNA Viruses: Implications of Comparative Analysis of Amino Acid Sequences
inferredcites →https://doi.org/10.3389/fmicb.2013.00093openalex-snapshot
Citrus tristeza virus: evolution of complex and varied genotypic groups
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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