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Clinical Outcome and Genetic Differences within a Monophyletic Dengue Virus Type 2 Population

https://doi.org/10.1371/journal.pone.0121696
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Outgoing claims: the papers this work cites, builds on, or argues with.

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A strong interferon response correlates with a milder dengue clinical condition
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Dengue virus surveillance in Singapore reveals high viral diversity through multiple introductions and in situ evolution
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Mutations in West Nile virus nonstructural proteins that facilitate replicon persistence in vitro attenuate virus replication in vitro and in vivo
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Characterization of an antigenic site that contains a dominant, type-specific neutralization determinant on the envelope protein domain III (ED3) of dengue 2 virus
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Functional analysis of dengue virus cyclization sequences located at the 5′ and 3′UTRs
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The capsid-coding region hairpin element (cHP) is a critical determinant of dengue virus and West Nile virus RNA synthesis
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Biochemical and genetic characterization of dengue virus methyltransferase
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The identification of immunodominant linear epitopes of dengue type 2 virus capsid and NS4a proteins using pin-bound peptides
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Genome-wide association study identifies susceptibility loci for dengue shock syndrome at MICB and PLCE1
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Solution structure of dengue virus capsid protein reveals another fold
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A ligand-binding pocket in the dengue virus envelope glycoprotein
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Immunodominant T-cell responses to dengue virus NS3 are associated with DHF
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Secreted dengue virus nonstructural protein NS1 is an atypical barrel-shaped high-density lipoprotein
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Comprehensive analysis of dengue virus-specific responses supports an HLA-linked protective role for CD8 + T cells
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RNA Sequences and Structures Required for the Recruitment and Activity of the Dengue Virus Polymerase
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The C-terminal 50 Amino Acid Residues of Dengue NS3 Protein Are Important for NS3-NS5 Interaction and Viral Replication
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Dengue viruses and mononuclear phagocytes. I. Infection enhancement by non-neutralizing antibody
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Dengue Viremia Titer, Antibody Response Pattern, and Virus Serotype Correlate with Disease Severity
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Slower Rates of Clearance of Viral Load and Virus‐Containing Immune Complexes in Patients with Dengue Hemorrhagic Fever
inferredcites →https://doi.org/10.1093/bioinformatics/bti079openalex-snapshot
HyPhy: hypothesis testing using phylogenies
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
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Mfold web server for nucleic acid folding and hybridization prediction
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Phylogenetic evidence for adaptive evolution of dengue viruses in nature
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Severity‐Related Molecular Differences among Nineteen Strains of Dengue Type 2 Viruses
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Understanding the contribution of cellular immunity to dengue disease pathogenesis
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Antibody Responses to Asian and American Genotypes of Dengue 2 Virus in Immunized Mice
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Cross-Reactive T-Cell Responses to the Nonstructural Regions of Dengue Viruses among Dengue Fever and Dengue Hemorrhagic Fever Patients in Malaysia
inferredcites →https://doi.org/10.1128/jcm.01258-06openalex-snapshot
Cost-Effective Real-Time Reverse Transcriptase PCR (RT-PCR) To Screen for Dengue Virus followed by Rapid Single-Tube Multiplex RT-PCR for Serotyping of the Virus
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Identification of B-Cell Epitope of Dengue Virus Type 1 and Its Application in Diagnosis of Patients
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Role of Nonstructural Protein NS2A in Flavivirus Assembly
inferredcites →https://doi.org/10.1128/jvi.00316-08openalex-snapshot
Antibodies to Envelope Glycoprotein of Dengue Virus during the Natural Course of Infection Are Predominantly Cross-Reactive and Recognize Epitopes Containing Highly Conserved Residues at the Fusion Loop of Domain II
inferredcites →https://doi.org/10.1128/jvi.00432-07openalex-snapshot
Type- and Subcomplex-Specific Neutralizing Antibodies against Domain III of Dengue Virus Type 2 Envelope Protein Recognize Adjacent Epitopes
inferredcites →https://doi.org/10.1128/jvi.00606-08openalex-snapshot
Characterization of Dengue Virus Complex-Specific Neutralizing Epitopes on Envelope Protein Domain III of Dengue 2 Virus
inferredcites →https://doi.org/10.1128/jvi.00736-12openalex-snapshot
Genome-Wide Patterns of Intrahuman Dengue Virus Diversity Reveal Associations with Viral Phylogenetic Clade and Interhost Diversity
inferredcites →https://doi.org/10.1128/jvi.01732-06openalex-snapshot
Antibody Recognition and Neutralization Determinants on Domains I and II of West Nile Virus Envelope Protein
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An In-Depth Analysis of Original Antigenic Sin in Dengue Virus Infection
inferredcites →https://doi.org/10.1128/jvi.02037-10openalex-snapshot
The 5′ and 3′ Downstream AUG Region Elements Are Required for Mosquito-Borne Flavivirus RNA Replication
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Crystal Structure of the Dengue Virus RNA-Dependent RNA Polymerase Catalytic Domain at 1.85-Angstrom Resolution
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Membrane Topology and Function of Dengue Virus NS2A Protein
inferredcites →https://doi.org/10.1128/jvi.02675-12openalex-snapshot
Differential Targeting of Viral Components by CD4+versus CD8+T Lymphocytes in Dengue Virus Infection
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Overlapping Local and Long-Range RNA-RNA Interactions Modulate Dengue Virus Genome Cyclization and Replication
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Structure and Function of Flavivirus NS5 Methyltransferase
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High-Resolution Analysis of Intrahost Genetic Diversity in Dengue Virus Serotype 1 Infection Identifies Mixed Infections
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inferredcites →https://doi.org/10.1128/jvi.73.6.4738-4747.1999openalex-snapshot
Dengue Virus Structural Differences That Correlate with Pathogenesis
inferredcites →https://doi.org/10.1128/jvi.73.7.6104-6110.1999openalex-snapshot
Dengue Virus Type 1 Nonstructural Glycoprotein NS1 Is Secreted from Mammalian Cells as a Soluble Hexamer in a Glycosylation-Dependent Fashion
inferredcites →https://doi.org/10.1128/jvi.75.14.6719-6728.2001openalex-snapshot
Essential Role of Cyclization Sequences in Flavivirus RNA Replication
inferredcites →https://doi.org/10.1128/jvi.75.20.9633-9643.2001openalex-snapshot
Mutagenesis of the Dengue Virus Type 2 NS3 Protein within and outside Helicase Motifs: Effects on Enzyme Activity and Virus Replication
inferredcites →https://doi.org/10.1128/jvi.76.10.4773-4784.2002openalex-snapshot
Mutations in the Yellow Fever Virus Nonstructural Protein NS2A Selectively Block Production of Infectious Particles
inferredcites →https://doi.org/10.1128/jvi.78.22.12225-12235.2004openalex-snapshot
Analysis of Adaptive Mutations in Kunjin Virus Replicon RNA Reveals a Novel Role for the Flavivirus Nonstructural Protein NS2A in Inhibition of Beta Interferon Promoter-Driven Transcription
inferredcites →https://doi.org/10.1128/jvi.79.16.10268-10277.2005openalex-snapshot
Structure of the Flavivirus Helicase: Implications for Catalytic Activity, Protein Interactions, and Proteolytic Processing
inferredcites →https://doi.org/10.1128/jvi.79.16.10278-10288.2005openalex-snapshot
Structure of the Dengue Virus Helicase/Nucleoside Triphosphatase Catalytic Domain at a Resolution of 2.4 A
inferredcites →https://doi.org/10.1128/jvi.79.2.1223-1231.2005openalex-snapshot
Variable Surface Epitopes in the Crystal Structure of Dengue Virus Type 3 Envelope Glycoprotein
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Early T-Cell Responses to Dengue Virus Epitopes in Vietnamese Adults with Secondary Dengue Virus Infections
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Antibodies against West Nile Virus Nonstructural Protein NS1 Prevent Lethal Infection through Fc γ Receptor-Dependent and -Independent Mechanisms
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A Single Amino Acid Substitution in the West Nile Virus Nonstructural Protein NS2A Disables Its Ability To Inhibit Alpha/Beta Interferon Induction and Attenuates Virus Virulence in Mice
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FLAVIVIRUS GENOME ORGANIZATION, EXPRESSION, AND REPLICATION
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Dominant recognition by human CD8+ cytotoxic T lymphocytes of dengue virus nonstructural proteins NS3 and NS1.2a.
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Utility of warning signs in guiding admission and predicting severe disease in adult dengue
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Evolution and heterogeneity of multiple serotypes of Dengue virus in Pakistan, 2006–2011
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Detecting Individual Sites Subject to Episodic Diversifying Selection
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Dengue 1 Diversity and Microevolution, French Polynesia 2001–2006: Connection with Epidemiology and Clinics
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Secreted NS1 of Dengue Virus Attaches to the Surface of Cells via Interactions with Heparan Sulfate and Chondroitin Sulfate E
inferredcites →https://doi.org/10.1371/journal.ppat.1000632openalex-snapshot
Dengue Virus Capsid Protein Usurps Lipid Droplets for Viral Particle Formation
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Immature Dengue Virus: A Veiled Pathogen?
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The Development of Therapeutic Antibodies That Neutralize Homologous and Heterologous Genotypes of Dengue Virus Type 1
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BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT
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Dengue Virus Surveillance for Early Warning, Singapore
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Functional RNA Elements in the Dengue Virus Genome
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A Protective Role for Dengue Virus-Specific CD8+ T Cells
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The Dual-Specific Binding of Dengue Virus and Target Cells for the Antibody-Dependent Enhancement of Dengue Virus Infection
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Quantitative mass spectrometry of DENV-2 RNA-interacting proteins reveals that the DEAD-box RNA helicase DDX6 binds the DB1 and DB2 3’ UTR structures
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What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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