On the public citation graph

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers

https://doi.org/10.1371/journal.pone.0157505
0 signed · 225 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.1585openalex-snapshot
Discrimination of grasshopper ( O rthoptera: A crididae) diet and niche overlap using next‐generation sequencing of gut contents
inferredcites →https://doi.org/10.1007/s11104-016-2852-yopenalex-snapshot
A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron
inferredcites →https://doi.org/10.1016/j.fsigen.2014.07.014openalex-snapshot
Forensic soil DNA analysis using high-throughput sequencing: A comparison of four molecular markers
inferredcites →https://doi.org/10.1016/j.tig.2012.08.001openalex-snapshot
The golden age of DNA metasystematics
inferredcites →https://doi.org/10.1073/pnas.0905845106openalex-snapshot
A DNA barcode for land plants
inferredcites →https://doi.org/10.1073/pnas.1104551108openalex-snapshot
Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants
inferredcites →https://doi.org/10.1073/pnas.1116812108openalex-snapshot
Refining the DNA barcode for land plants
inferredcites →https://doi.org/10.1080/14634988.2013.825194openalex-snapshot
Floristic quality assessment for marshes in Alberta's northern prairie and boreal regions
inferredcites →https://doi.org/10.1089/10665270050081478openalex-snapshot
A Greedy Algorithm for Aligning DNA Sequences
inferredcites →https://doi.org/10.1093/bioinformatics/btq461openalex-snapshot
Search and clustering orders of magnitude faster than BLAST
inferredcites →https://doi.org/10.1093/bioinformatics/btr026openalex-snapshot
Quality control and preprocessing of metagenomic datasets
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/nar/gkl938openalex-snapshot
Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding
inferredcites →https://doi.org/10.1093/nar/gkr732openalex-snapshot
ecoPrimers: inference of new DNA barcode markers from whole genome sequence analysis
inferredcites →https://doi.org/10.1098/rsbl.2014.0562openalex-snapshot
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match
inferredcites →https://doi.org/10.1098/rstb.2005.1725openalex-snapshot
Defining operational taxonomic units using DNA barcode data
inferredcites →https://doi.org/10.1111/1755-0998.12277openalex-snapshot
Challenges to barcoding an entire flora
inferredcites →https://doi.org/10.1111/1755-0998.12508openalex-snapshot
How to limit false positives in environmental DNA and metabarcoding?
inferredcites →https://doi.org/10.1111/ele.12162openalex-snapshot
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
inferredcites →https://doi.org/10.1111/j.1095-8339.2009.00996.xopenalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III
inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04989.xopenalex-snapshot
Spatial patterns of plant diversity below‐ground as revealed by DNA barcoding
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05390.xopenalex-snapshot
Plant species richness belowground: higher richness and new patterns revealed by next‐generation sequencing
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05519.xopenalex-snapshot
Biomonitoring 2.0: a new paradigm in ecosystem assessment made possible by next‐generation DNA sequencing
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05537.xopenalex-snapshot
New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05545.xopenalex-snapshot
DNA from soil mirrors plant taxonomic and growth form diversity
inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05550.xopenalex-snapshot
Bioinformatic challenges for DNA metabarcoding of plants and animals
inferredcites →https://doi.org/10.1111/j.1755-0998.2009.02652.xopenalex-snapshot
Are plant species inherently harder to discriminate than animal species using DNA barcoding markers?
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00092.xopenalex-snapshot
Discriminating plant species in a local temperate flora using the rbcL + matK DNA barcode
inferredcites →https://doi.org/10.1111/mec.13428openalex-snapshot
Next‐generation monitoring of aquatic biodiversity using environmental DNA metabarcoding
inferredcites →https://doi.org/10.1111/rec.12086openalex-snapshot
The Peace–Athabasca Delta: Portrait of a Dynamic Ecosystem
inferredcites →https://doi.org/10.1126/science.1084114openalex-snapshot
Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments
inferredcites →https://doi.org/10.1139/b06-047openalex-snapshot
DNA barcoding in land plants: evaluation of rbcL in a multigene tiered approach
inferredcites →https://doi.org/10.1186/1471-2105-13-31openalex-snapshot
PANDAseq: paired-end assembler for illumina sequences
inferredcites →https://doi.org/10.1186/1471-2180-10-189openalex-snapshot
ITS as an environmental DNA barcode for fungi: an in silico approach reveals potential PCR biases
inferredcites →https://doi.org/10.1186/1742-9994-6-16openalex-snapshot
Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures
inferredcites →https://doi.org/10.1186/s12915-014-0087-zopenalex-snapshot
Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
inferredcites →https://doi.org/10.1371/journal.pone.0000059openalex-snapshot
Taxonomic Reliability of DNA Sequences in Public Sequence Databases: A Fungal Perspective
inferredcites →https://doi.org/10.1371/journal.pone.0013042openalex-snapshot
An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications
inferredcites →https://doi.org/10.1371/journal.pone.0017497openalex-snapshot
Environmental Barcoding: A Next-Generation Sequencing Approach for Biomonitoring Applications Using River Benthos
inferredcites →https://doi.org/10.1371/journal.pone.0043971openalex-snapshot
Extensive Pyrosequencing Reveals Frequent Intra-Genomic Variations of Internal Transcribed Spacer Regions of Nuclear Ribosomal DNA
inferredcites →https://doi.org/10.1371/journal.pone.0138432openalex-snapshot
Large-Scale Biomonitoring of Remote and Threatened Ecosystems via High-Throughput Sequencing
inferredcites →https://doi.org/10.2307/25065646openalex-snapshot
A classification for extant ferns

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/2041-210x.13865zenodo-depositor-declared
Plant biodiversity assessment through soil eDNA reflects temporal and local diversity
inferred← citeshttps://doi.org/10.1111/avsc.12806zenodo-depositor-declared
Evaluating the feasibility of using plant‐specific metabarcoding to assess forest types from soil eDNA
inferred← citeshttps://doi.org/10.2139/ssrn.3063547openalex-extracted
Bibliography of 2016 Scientific Publications on the Ramsar Convention or Ramsar Sites
inferred← citeshttps://doi.org/10.2139/ssrn.4865603openalex-extracted
Development of a Universal High Throughput Sequencing System for Species Identification of Birds
inferred← citeshttps://doi.org/10.3897/bdj.13.e142020zenodo-depositor-declared
The InBIO Barcoding Initiative Database: contribution to the knowledge of DNA barcodes of the vascular plants of north-eastern Portugal
inferred← citeshttps://doi.org/10.3897/mbmg.8.127959zenodo-depositor-declared
Application of a dual-locus metabarcoding approach for a more comprehensive account of cattle dietary items in a semi-arid African savanna with special reference to forbs
inferred← citeshttps://doi.org/10.1002/2688-8319.12120openalex-snapshot
Monitoring of honey bee floral resources with pollen DNA metabarcoding as a complementary tool to vegetation surveys
inferred← citeshttps://doi.org/10.1002/ajb2.16120openalex-snapshot
Environmental DNA as an emerging tool in botanical research
inferred← citeshttps://doi.org/10.1002/aps3.1155openalex-snapshot
Finding the pond through the weeds: eDNA reveals underestimated diversity of pondweeds
inferred← citeshttps://doi.org/10.1002/ece3.10014openalex-snapshot
Detection of vertebrates from natural and artificial inland water bodies in a semi‐arid habitat using eDNA from filtered, swept, and sediment samples
inferred← citeshttps://doi.org/10.1002/ece3.6042openalex-snapshot
Assessing insect biodiversity with automatic light traps in Brazil: Pearls and pitfalls of metabarcoding samples in preservative ethanol
inferred← citeshttps://doi.org/10.1002/ece3.71195openalex-snapshot
Comparative Analysis of Pasture Composition: DNA Metabarcoding Versus Quadrat‐Based Botanical Surveys in Experimental Grassland Plots
inferred← citeshttps://doi.org/10.1002/ece3.72102openalex-snapshot
Mock Plant Communities and a Large Mammal Case Study Reveal ITS2 Primer Bias Against Graminoids
inferred← citeshttps://doi.org/10.1002/ece3.72125openalex-snapshot
DNA Metabarcoding as a Tool to Study Plankton Responses to Warming and Salinity Change in Mesocosms
inferred← citeshttps://doi.org/10.1002/ece3.9121openalex-snapshot
Dietary characterization of the endangered salt marsh harvest mouse and sympatric rodents using DNA metabarcoding
inferred← citeshttps://doi.org/10.1002/ecs2.2916openalex-snapshot
Interspecific competition in bats and diet shifts in response to white‐nose syndrome
inferred← citeshttps://doi.org/10.1002/edn3.120openalex-snapshot
Development of an environmental DNA metabarcoding assay for aquatic vascular plant communities
inferred← citeshttps://doi.org/10.1002/edn3.287openalex-snapshot
Metabarcoding of soil environmental DNA replicates plant community variation but not specificity
inferred← citeshttps://doi.org/10.1002/edn3.295openalex-snapshot
Detection of a cryptic terrestrial insect using novel eDNA collection techniques
inferred← citeshttps://doi.org/10.1002/edn3.307openalex-snapshot
Species‐specific DNA distribution in spruce–beech forest soil
inferred← citeshttps://doi.org/10.1002/edn3.380openalex-snapshot
Evaluation and optimization of an eDNA metabarcoding assay for detection of freshwater myxozoan communities
inferred← citeshttps://doi.org/10.1002/edn3.407openalex-snapshot
Toward freshwater plant diversity surveys with eDNA barcoding and metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.70155openalex-snapshot
DNA Metabarcoding as a Complementary Approach to Traditional Surveys for Monitoring the Plant Diversity in the Amazon canga
inferred← citeshttps://doi.org/10.1002/edn3.70191openalex-snapshot
Deciphering Landscape‐Scale Plant Cover and Biodiversity From Soil eDNA
inferred← citeshttps://doi.org/10.1002/edn3.70225openalex-snapshot
Comparison of Short Generalist and Specific Markers to Assess the Diversity of Arthropods Using eDNA Metabarcoding
inferred← citeshttps://doi.org/10.1002/edn3.70291openalex-snapshot
Enhanced Reconstruction of Holocene Bryophytes From Sedimentary Ancient DNA Using Bryophyte‐Targeted Primers
inferred← citeshttps://doi.org/10.1002/pca.3466openalex-snapshot
Integrating DNA Barcoding Within an Orthogonal Approach for Herbal Product Authentication: A Narrative Review
inferred← citeshttps://doi.org/10.1007/978-3-030-64682-0_7openalex-snapshot
The Intersection of Forensic Techniques with Ecological Issues
inferred← citeshttps://doi.org/10.1007/978-3-031-34854-9_18openalex-snapshot
Environmental and Invertebrate-Derived DNA: A Powerful Approach for Surveying and Monitoring Biodiversity
inferred← citeshttps://doi.org/10.1007/978-3-662-65658-7_10openalex-snapshot
Rivers and Floodplains
inferred← citeshttps://doi.org/10.1007/978-981-97-9859-9_85openalex-snapshot
Environmental Sustainability Using eDNA Metabarcoding
inferred← citeshttps://doi.org/10.1007/s00442-023-05428-4openalex-snapshot
Catchment-based sampling of river eDNA integrates terrestrial and aquatic biodiversity of alpine landscapes
inferred← citeshttps://doi.org/10.1007/s10336-023-02118-zopenalex-snapshot
Metabarcoding reveals seasonal variations in the consumption of crops and weeds by wild Red-legged Partridge Alectoris rufa
inferred← citeshttps://doi.org/10.1007/s10531-021-02279-4openalex-snapshot
Detecting rare terrestrial orchids and associated plant communities from soil samples with eDNA methods
inferred← citeshttps://doi.org/10.1007/s10811-018-1730-9openalex-snapshot
Rapid detection of macroalgal seed bank on cobbles: application of DNA metabarcoding using next-generation sequencing
inferred← citeshttps://doi.org/10.1007/s10841-025-00699-zopenalex-snapshot
DNA metabarcoding of faecal samples reveals life-history traits in the critically endangered bush-cricket
inferred← citeshttps://doi.org/10.1007/s11033-024-09885-9openalex-snapshot
Using grass inflorescence as source material for biomonitoring through environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1007/s11033-026-11736-8openalex-snapshot
Advancing plant DNA barcoding: integrating chloroplast genome sequencing, cryptic diversity discovery and machine learning
inferred← citeshttps://doi.org/10.1007/s11104-021-05261-9openalex-snapshot
Tracing hotspots of soil erosion in high mountain environments: how forensic science based on plant eDNA can lead the way. An opinion
inferred← citeshttps://doi.org/10.1007/s11274-021-03019-0openalex-snapshot
DNA barcoding of phytopathogens for disease diagnostics and bio-surveillance
inferred← citeshttps://doi.org/10.1016/b978-0-12-824351-0.00002-xopenalex-snapshot
Environment biomonitoring with eDNA—A new perspective to identify biodiversity
inferred← citeshttps://doi.org/10.1016/b978-0-443-34222-6.00001-2openalex-snapshot
Conventional and advanced biodiversity assessment techniques with special emphasis on environmental DNA
inferred← citeshttps://doi.org/10.1016/j.agee.2016.10.026openalex-snapshot
Do genetically modified plants affect adversely on soil microbial communities?
inferred← citeshttps://doi.org/10.1016/j.aquabot.2025.103954openalex-snapshot
Variations in environmental DNA detection of aquatic plants across water body types: A case study of the Tokachi River
inferred← citeshttps://doi.org/10.1016/j.avrs.2022.100034openalex-snapshot
Seasonal variations in the plant diet of the Chinese Monal revealed by fecal DNA metabarcoding analysis
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2019.107450openalex-snapshot
Application of next-generation sequencing for the identification of herbal products
inferred← citeshttps://doi.org/10.1016/j.ecolind.2021.108303openalex-snapshot
Plant sedimentary DNA as a proxy for vegetation reconstruction in eastern and northern Asia
inferred← citeshttps://doi.org/10.1016/j.foodchem.2018.08.032openalex-snapshot
Development of a DNA metabarcoding method for the identification of fifteen mammalian and six poultry species in food
inferred← citeshttps://doi.org/10.1016/j.fsigen.2025.103284openalex-snapshot
Utilizing eDNA from bacteria, fungi, plants, and arthropods associated with mock geologic evidence for sample-to-sample comparisons and study site separation: A feasibility study
inferred← citeshttps://doi.org/10.1016/j.fsigen.2025.103379openalex-snapshot
Assessing the value of bacteria, plants, fungi and arthropods characterized via DNA metabarcoding for separation of forensic-like surface soils at varied spatial scales
inferred← citeshttps://doi.org/10.1016/j.gecco.2019.e00547openalex-snapshot
Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global eDNA
inferred← citeshttps://doi.org/10.1016/j.gecco.2019.e00689openalex-snapshot
Environmental DNA reveals landscape mosaic of wetland plant communities
inferred← citeshttps://doi.org/10.1016/j.micres.2024.127634openalex-snapshot
Negative plant-soil feedback in Arabidopsis thaliana: Disentangling the effects of soil chemistry, microbiome, and extracellular self-DNA
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2022.157617openalex-snapshot
Key factors to consider in the use of environmental DNA metabarcoding to monitor terrestrial ecological restoration
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2024.176200openalex-snapshot
A comparative analysis of eDNA metabarcoding and field surveys: Exploring freshwater plant communities in rivers
inferred← citeshttps://doi.org/10.1016/j.soilbio.2021.108264openalex-snapshot
The diet of major predators of forest soils: A first analysis on syntopic species of Chilopoda through DNA metabarcoding
inferred← citeshttps://doi.org/10.1017/s0954102021000274openalex-snapshot
Exploring the plant environmental DNA diversity in soil from two sites on Deception Island (Antarctica, South Shetland Islands) using metabarcoding
inferred← citeshttps://doi.org/10.1038/s41467-017-01312-xopenalex-snapshot
Algorithm for post-clustering curation of DNA amplicon data yields reliable biodiversity estimates
inferred← citeshttps://doi.org/10.1038/s41597-024-02962-5openalex-snapshot
Semi-automated sequence curation for reliable reference datasets in ITS2 vascular plant DNA (meta-)barcoding
inferred← citeshttps://doi.org/10.1038/s41598-020-67452-1openalex-snapshot
Persistence of environmental DNA in cultivated soils: implication of this memory effect for reconstructing the dynamics of land use and cover changes
inferred← citeshttps://doi.org/10.1038/s41598-021-95702-3openalex-snapshot
Geographic source estimation using airborne plant environmental DNA in dust
inferred← citeshttps://doi.org/10.1038/s41598-025-19083-7openalex-snapshot
Multi-species eDNA as a screening tool to facilitate early detection and eradication of aquatic invasive species in large water bodies
inferred← citeshttps://doi.org/10.1038/s42003-026-10496-2openalex-snapshot
The potential of methylation signal detection in eDNA toward functional ecological monitoring
inferred← citeshttps://doi.org/10.1038/s43247-024-01277-yopenalex-snapshot
Environmental DNA identifies coastal plant community shift 1,000 years ago in Torrens Island, South Australia
inferred← citeshttps://doi.org/10.1038/srep41948openalex-snapshot
High-throughput sequencing of multiple amplicons for barcoding and integrative taxonomy
inferred← citeshttps://doi.org/10.1039/d4nj01173bopenalex-snapshot
A novel fluorescent probe for discriminating microbial DNA in ecosystems and model organisms
inferred← citeshttps://doi.org/10.1051/bioconf/20249401002openalex-snapshot
Comparison of Metabarcoding Techniques for Dietary Assessment in Herbivores and Omnivores
inferred← citeshttps://doi.org/10.1071/mf19175openalex-snapshot
A muddy time capsule: using sediment environmental DNA for the long-term monitoring of coastal vegetated ecosystems
inferred← citeshttps://doi.org/10.1071/zo20085openalex-snapshot
Optimisation of a pollen DNA metabarcoding method for diet analysis of flying-foxes (Pteropus spp.)
inferred← citeshttps://doi.org/10.1080/14888386.2026.2656989openalex-snapshot
DNA metabarcoding in forest ecosystems: current methods and future directions
inferred← citeshttps://doi.org/10.1086/696613openalex-snapshot
Identifying North American freshwater invertebrates using DNA barcodes: are existing COI sequence libraries fit for purpose?
inferred← citeshttps://doi.org/10.1086/712232openalex-snapshot
Propylene glycol-based antifreeze is an effective preservative for DNA metabarcoding of benthic arthropods
inferred← citeshttps://doi.org/10.1093/aobpla/plac031openalex-snapshot
Environmental DNA analysis as an emerging non-destructive method for plant biodiversity monitoring: a review
inferred← citeshttps://doi.org/10.1093/gigascience/gix080openalex-snapshot
Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.001.0001openalex-snapshot
Environmental DNA
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.002.0003openalex-snapshot
Copyright Page
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.002.0004openalex-snapshot
Preface
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0001openalex-snapshot
Introduction to environmental DNA (eDNA)
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0002openalex-snapshot
DNA metabarcode choice and design
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0003openalex-snapshot
Reference databases
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0004openalex-snapshot
Sampling
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0005openalex-snapshot
DNA extraction
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0006openalex-snapshot
DNA amplification and multiplexing
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0007openalex-snapshot
DNA sequencing
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0008openalex-snapshot
DNA metabarcoding data analysis
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0009openalex-snapshot
Single-species detection
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0010openalex-snapshot
Environmental DNA for functional diversity
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0011openalex-snapshot
Some early landmark studies
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0012openalex-snapshot
Freshwater ecosystems
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0013openalex-snapshot
Marine environments
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0014openalex-snapshot
Terrestrial ecosystems
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0015openalex-snapshot
Paleoenvironments
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0016openalex-snapshot
Host-associated microbiota
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0017openalex-snapshot
Diet analysis
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0018openalex-snapshot
Analysis of bulk samples
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.003.0019openalex-snapshot
The future of eDNA metabarcoding
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.005.0001openalex-snapshot
Examples of primer pairs available for DNA metabarcoding
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.005.0002openalex-snapshot
Three-hundred and eighty-four (384) tags of eight nucleotides, with at least three differences among them
inferred← citeshttps://doi.org/10.1093/oso/9780198767220.005.0003openalex-snapshot
Checklist when designing a PCR-based DNA metabarcoding experiment
inferred← citeshttps://doi.org/10.1101/2021.08.11.456029openalex-snapshot
Towards the extended barcode concept: Generating DNA reference data through genome skimming of danish plants
inferred← citeshttps://doi.org/10.1101/2021.11.11.468310openalex-snapshot
A DNA barcode database for the woody plants of Japan
inferred← citeshttps://doi.org/10.1101/2022.01.02.474438openalex-snapshot
Dealing with the promise of metabarcoding in mega-event biomonitoring: EXPO2015 unedited data
inferred← citeshttps://doi.org/10.1101/2023.06.12.544582openalex-snapshot
Semi-automated curation and manual addition of sequences to build reliable and extensive reference databases for ITS2 vascular plant DNA (meta-)barcoding
inferred← citeshttps://doi.org/10.1101/2024.04.01.587655openalex-snapshot
Identification of Large Japanese field mouse Apodemus speciosus food plant resources in an industrial green space using DNA metabarcoding
inferred← citeshttps://doi.org/10.1101/2025.11.15.688602openalex-snapshot
Enhanced reconstruction of Holocene bryophytes from sedimentary ancient DNA using bryophyte-specific primers
inferred← citeshttps://doi.org/10.1111/1365-2664.70082openalex-snapshot
Impacts of proactive health management on cattle and horse diets and dung biodiversity in Danish rewilding areas
inferred← citeshttps://doi.org/10.1111/1755-0998.12888openalex-snapshot
Performance of amplicon and shotgun sequencing for accurate biomass estimation in invertebrate community samples
inferred← citeshttps://doi.org/10.1111/1755-0998.12895openalex-snapshot
Minimizing polymerase biases in metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.13049openalex-snapshot
Estimating belowground plant abundance with DNA metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.13148openalex-snapshot
Testing multiple substrates for terrestrial biodiversity monitoring using environmental DNA metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.13320openalex-snapshot
Genotype by sequencing: An alternative new method to amplicon metabarcoding and shotgun metagenomics for the assessment of eukaryote biodiversity
inferred← citeshttps://doi.org/10.1111/1755-0998.13358openalex-snapshot
TaxonTableTools: A comprehensive, platform‐independent graphical user interface software to explore and visualise DNA metabarcoding data
inferred← citeshttps://doi.org/10.1111/1755-0998.13584openalex-snapshot
ORTHOSKIM: In silico sequence capture from genomic and transcriptomic libraries for phylogenomic and barcoding applications
inferred← citeshttps://doi.org/10.1111/1755-0998.13709openalex-snapshot
Optimal sequence similarity thresholds for clustering of molecular operational taxonomic units in DNA metabarcoding studies
inferred← citeshttps://doi.org/10.1111/1755-0998.13748openalex-snapshot
A DNA barcode reference library for the native woody seed plants of Japan
inferred← citeshttps://doi.org/10.1111/1755-0998.13937openalex-snapshot
Finding the perfect pairs: A matchmaking of plant markers and primers for multi‐marker eDNA metabarcoding
inferred← citeshttps://doi.org/10.1111/1755-0998.14115openalex-snapshot
Performance of DNA Metabarcoding vs. Morphological Methods for Assessing Intertidal Turf and Foliose Algae Diversity
inferred← citeshttps://doi.org/10.1111/ecog.05049openalex-snapshot
Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences
inferred← citeshttps://doi.org/10.1111/ecog.05100openalex-snapshot
Revealing hidden plant diversity in arid environments
inferred← citeshttps://doi.org/10.1111/jse.12254openalex-snapshot
Plant DNA barcodes: Applications today and in the future
inferred← citeshttps://doi.org/10.1111/jvs.70124openalex-snapshot
Soil Metabarcoding Helps Identify Recalcitrant Taxa From Chaparral Seed Banks
inferred← citeshttps://doi.org/10.1111/mec.14350openalex-snapshot
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
inferred← citeshttps://doi.org/10.1111/mec.14478openalex-snapshot
Scaling up: A guide to high‐throughput genomic approaches for biodiversity analysis
inferred← citeshttps://doi.org/10.1111/mec.14840openalex-snapshot
Quantitative and qualitative assessment of pollen DNA metabarcoding using constructed species mixtures
inferred← citeshttps://doi.org/10.1111/mec.15472openalex-snapshot
Ecosystems monitoring powered by environmental genomics: A review of current strategies with an implementation roadmap
inferred← citeshttps://doi.org/10.1111/mec.16847openalex-snapshot
Contrasting seasonal patterns in diet and dung‐associated invertebrates of feral cattle and horses in a rewilding area
inferred← citeshttps://doi.org/10.1111/nph.17733openalex-snapshot
Crop genetic erosion: understanding and responding to loss of crop diversity
inferred← citeshttps://doi.org/10.1111/oik.06806openalex-snapshot
Uncovering the complete biodiversity structure in spatial networks: the example of riverine systems
inferred← citeshttps://doi.org/10.1111/rec.12868openalex-snapshot
DNA metabarcoding—a new approach to fauna monitoring in mine site restoration
inferred← citeshttps://doi.org/10.1111/rec.13831openalex-snapshot
Soil environmental DNA metabarcoding can quantify local plant diversity for biomonitoring across varied environments
inferred← citeshttps://doi.org/10.1134/s102279542104013xopenalex-snapshot
DNA Barcoding: Applications
inferred← citeshttps://doi.org/10.1139/gen-2016-0100openalex-snapshot
The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA
inferred← citeshttps://doi.org/10.1139/gen-2018-0102openalex-snapshot
Evaluating the efficacy of sample collection approaches and DNA metabarcoding for identifying the diversity of plants utilized by nectivorous bats
inferred← citeshttps://doi.org/10.1139/gen-2019-0198openalex-snapshot
Plant DNA barcoding necessitates marker-specific efforts to establish more comprehensive reference databases
inferred← citeshttps://doi.org/10.1186/s12859-022-04631-zopenalex-snapshot
LANDMark: an ensemble approach to the supervised selection of biomarkers in high-throughput sequencing data
inferred← citeshttps://doi.org/10.1371/journal.pone.0187803openalex-snapshot
Performance of DNA metabarcoding, standard barcoding, and morphological approach in the identification of host–parasitoid interactions
inferred← citeshttps://doi.org/10.1371/journal.pone.0195403openalex-snapshot
Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation
inferred← citeshttps://doi.org/10.1371/journal.pone.0196430openalex-snapshot
Effects of bioturbation on environmental DNA migration through soil media
inferred← citeshttps://doi.org/10.1371/journal.pone.0219700openalex-snapshot
Detection of an invasive aquatic plant in natural water bodies using environmental DNA
inferred← citeshttps://doi.org/10.1371/journal.pone.0231436openalex-snapshot
Optimization of the second internal transcribed spacer (ITS2) for characterizing land plants from soil
inferred← citeshttps://doi.org/10.1371/journal.pone.0235569openalex-snapshot
The utility of DNA barcodes to confirm the identification of palm collections in botanical gardens
inferred← citeshttps://doi.org/10.1371/journal.pone.0252632openalex-snapshot
Identification of Lagopus muta japonica food plant resources in the Northern Japan Alps using DNA metabarcoding
inferred← citeshttps://doi.org/10.1371/journal.pone.0302189openalex-snapshot
Identification of Large Japanese field mouse Apodemus speciosus food plant resources in an industrial green space using DNA metabarcoding
inferred← citeshttps://doi.org/10.1371/journal.pone.0344097openalex-snapshot
Non-destructive environmental DNA extracted from owl pellet contents: A valuable tool for monitoring mammalian species richness
inferred← citeshttps://doi.org/10.1590/1678-4685-gmb-2017-0282openalex-snapshot
Can plant DNA barcoding be implemented in species-rich tropical regions? A perspective from São Paulo State, Brazil
inferred← citeshttps://doi.org/10.18174/463307openalex-snapshot
Next generation DNA sequencing based strategies; towards a new era for the traceability of endangered species and genetically modified organisms
inferred← citeshttps://doi.org/10.20417/nzjecol.41.28openalex-snapshot
Using DNA meta barcoding to assess New Zealand's terrestrial biodiversity
inferred← citeshttps://doi.org/10.20417/nzjecol.42.9openalex-snapshot
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples
inferred← citeshttps://doi.org/10.29223/prod.acad.itv.ds.2022.01.almeidaopenalex-snapshot
Anais do II Workshop de Pós-Graduação e Pesquisa: da ciência à prática: o papel do Instituto Tecnológico Vale frente às necessidades socioambientais
inferred← citeshttps://doi.org/10.29223/prod.tec.itv.ds.2023.24.oliveiraopenalex-snapshot
Manual para o monitoramento de Biodiversidade por meio de DNA ambiental (eDNA metabarcoding)
inferred← citeshttps://doi.org/10.3133/ofr20171061openalex-snapshot
Incorporating genetic sampling in long-term monitoring and adaptive management in the San Diego County Management Strategic Plan Area, Southern California
inferred← citeshttps://doi.org/10.3389/fenvs.2021.617924openalex-snapshot
Diversity Metrics Are Robust to Differences in Sampling Location and Depth for Environmental DNA of Plants in Small Temperate Lakes
inferred← citeshttps://doi.org/10.3389/fenvs.2024.1415338openalex-snapshot
Water filter: a rapid water environmental DNA collector in the field
inferred← citeshttps://doi.org/10.3389/fevo.2019.00337openalex-snapshot
Gaps in DNA-Based Biomonitoring Across the Globe
inferred← citeshttps://doi.org/10.3389/fevo.2020.581835openalex-snapshot
Metabarcoding From Microbes to Mammals: Comprehensive Bioassessment on a Global Scale
inferred← citeshttps://doi.org/10.3389/fevo.2021.735744openalex-snapshot
A Multi-Gene Region Targeted Capture Approach to Detect Plant DNA in Environmental Samples: A Case Study From Coastal Environments
inferred← citeshttps://doi.org/10.3389/fmars.2021.809703openalex-snapshot
Combined Use of eDNA Metabarcoding and Bottom Trawling for the Assessment of Fish Biodiversity in the Zhoushan Sea
inferred← citeshttps://doi.org/10.3389/fpls.2023.1208111openalex-snapshot
High throughput sequencing technology facility research of genomic modification crop cultivation influencing soil microbe
inferred← citeshttps://doi.org/10.3390/biom11020318openalex-snapshot
Looking for Hidden Enemies of Metabarcoding: Species Composition, Habitat and Management Can Strongly Influence DNA Extraction while Examining Grassland Communities
inferred← citeshttps://doi.org/10.3390/books978-3-0365-6698-6openalex-snapshot
Macrophytes in Inland Waters
inferred← citeshttps://doi.org/10.3390/conservation5040062openalex-snapshot
Developing High-Efficiency PCR Mini-Barcoding to Enforce Conservation Efforts Against Illegal Trade and Habitat Loss of Endangered Taxus L. in the Himalayas
inferred← citeshttps://doi.org/10.3390/d17020137openalex-snapshot
DNA Metabarcoding Using Indexed Primers: Workflow to Characterize Bacteria, Fungi, Plants, and Arthropods from Environmental Samples
inferred← citeshttps://doi.org/10.3390/d9040054openalex-snapshot
Metabarcoding of Environmental DNA Samples to Explore the Use of Uranium Mine Containment Ponds as a Water Source for Wildlife
inferred← citeshttps://doi.org/10.3390/f12111466openalex-snapshot
The Identification of Several Dipterocarpaceae and Fagaceae Trees by Barcode DNA Coupled with High-Resolution Melting Analysis
inferred← citeshttps://doi.org/10.3390/genes10030229openalex-snapshot
Tubulin-Based DNA Barcode: Principle and Applications to Complex Food Matrices
inferred← citeshttps://doi.org/10.3390/genes10060431openalex-snapshot
Single Fragment or Bulk Soil DNA Metabarcoding: Which is Better for Characterizing Biological Taxa Found in Surface Soils for Sample Separation?
inferred← citeshttps://doi.org/10.3390/plants10091830openalex-snapshot
Re-Establishment Techniques and Transplantations of Charophytes to Support Threatened Species
inferred← citeshttps://doi.org/10.3390/plants9040432openalex-snapshot
The Treasure Vault Can be Opened: Large-Scale Genome Skimming Works Well Using Herbarium and Silica Gel Dried Material
inferred← citeshttps://doi.org/10.3897/mbmg.6.85213openalex-snapshot
The potential of metabarcoding plant components of Malaise trap samples to enhance knowledge of plant-insect interactions
inferred← citeshttps://doi.org/10.3897/mbmg.6.89753openalex-snapshot
Assessing the lysis of diverse pollen from bulk environmental samples for DNA metabarcoding
inferred← citeshttps://doi.org/10.3897/mbmg.7.86883openalex-snapshot
Pollen metabarcoding of museum specimens and recently collected bumblebees (Bombus) indicates foraging shifts
inferred← citeshttps://doi.org/10.5204/thesis.eprints.244528openalex-snapshot
The efficacy of morphological and genetic owl pellet analysis compared to live-trapping in arid and semi-arid Australian small mammal monitoring systems
inferred← citeshttps://doi.org/10.52571/ptq.v17.n36.2020.846_periodico36_pgs_831_844.pdfopenalex-snapshot
BIOCHEMICAL CHARACTERIZATION OF Ferula rutbaensis MEDICINAL PLANT IN IRAQI WESTERN DESERT
inferred← citeshttps://doi.org/10.70675/5e22da3dz9faez44daz934az78a7b686e0ecopenalex-snapshot
Evaluation of green microalgae biodiversity in the alpine ecosystem
inferred← citeshttps://doi.org/10.70675/ffd71b43z5375z41f5za204z1bdb734066daopenalex-snapshot
Dynamiques intra- et interannuelles du régime alimentaire des carabes dans les champs de colza
inferred← citeshttps://doi.org/10.7287/peerj.2781v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.2781v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.2781v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.2781v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.2781v0.2/reviews/3openalex-snapshot
Peer Review #3 of "Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.11753openalex-snapshot
Exploring plant diversity through soil DNA in Thai national parks for influencing land reform and agriculture planning
inferred← citeshttps://doi.org/10.7717/peerj.18016openalex-snapshot
Is it worth the extra mile? Comparing environmental DNA and RNA metabarcoding for vertebrate and invertebrate biodiversity surveys in a lowland stream
inferred← citeshttps://doi.org/10.7717/peerj.2781openalex-snapshot
Bamboo tea: reduction of taxonomic complexity and application of DNA diagnostics based on rbcL and matK sequence data
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.