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Habitat-specific variation in gut microbial communities and pathogen prevalence in bumblebee queens (Bombus terrestris)

https://doi.org/10.1371/journal.pone.0204612
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Insects and Ecosystem Function
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Assessment of mutualism between Bombus terrestris and its microbiota by use of microcolonies
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Host–Bacterial Symbiosis in Health and Disease
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Insects as drivers of ecosystem processes
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Interaction effects of different drivers of wild bee decline and their influence on host–pathogen dynamics
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The role of the gut microbiome in health and disease of adult honey bee workers
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Two gut community enterotypes recur in diverse bumblebee species
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pH-mediated inhibition of a bumble bee parasite by an intestinal symbiont
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Experimental variation in polyandry affects parasite loads and fitness in a bumble-bee
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Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)
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Global effects of land use on local terrestrial biodiversity
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Delivery of crop pollination services is an insufficient argument for wild pollinator conservation
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UPARSE: highly accurate OTU sequences from microbial amplicon reads
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Gut microbial communities of social bees
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Patterns of widespread decline in North American bumble bees
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Symbiont-mediated insecticide resistance
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Caterpillars lack a resident gut microbiome
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Disease management in commercial bumble bee mass rearing, using production methods, multiplex PCR detection techniques, and regulatory assessment
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Bacterial Probiotics Induce an Immune Response in the Honey Bee (Hymenoptera: Apidae)
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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The Role of Yeasts as Insect Endosymbionts
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Importance of pollinators in changing landscapes for world crops
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Parasites in bloom: flowers aid dispersal and transmission of pollinator parasites within and between bee species
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SINTAX: a simple non-Bayesian taxonomy classifier for 16S and ITS sequences
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Bacterial microbiota associated with flower pollen is influenced by pollination type, and shows a high degree of diversity and species‐specificity
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Large‐scale cultivation of the bumblebee gut microbiota reveals an underestimated bacterial species diversity capable of pathogen inhibition
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The gut microbiota of insects – diversity in structure and function
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Ecological effects on gut bacterial communities in wild bumblebee colonies
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A simple and distinctive microbiota associated with honey bees and bumble bees
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Diversity of locust gut bacteria protects against pathogen invasion
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The Magnitude of Global Insect Species Richness
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Detecting Insect Pollinator Declines on Regional and Global Scales
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Entropy and diversity
inferredcites →https://doi.org/10.1111/mec.13787openalex-snapshot
Strain diversity and host specificity in a specialized gut symbiont of honeybees and bumblebees
inferredcites →https://doi.org/10.1126/science.1223813openalex-snapshot
Host-Gut Microbiota Metabolic Interactions
inferredcites →https://doi.org/10.1126/science.1255957openalex-snapshot
Bee declines driven by combined stress from parasites, pesticides, and lack of flowers
inferredcites →https://doi.org/10.1128/aem.00307-15openalex-snapshot
Development of the Honey Bee Gut Microbiome throughout the Queen-Rearing Process
inferredcites →https://doi.org/10.1128/aem.01043-13openalex-snapshot
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
inferredcites →https://doi.org/10.1128/aem.02335-17openalex-snapshot
Microbiome Structure Influences Infection by the Parasite Crithidia bombi in Bumble Bees
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Rapid Identification of Fungi by Using the ITS2 Genetic Region and an Automated Fluorescent Capillary Electrophoresis System
inferredcites →https://doi.org/10.1186/s40168-015-0113-6openalex-snapshot
The functionality of the gastrointestinal microbiome in non-human animals
inferredcites →https://doi.org/10.1186/s40168-018-0489-1openalex-snapshot
The queen’s gut refines with age: longevity phenotypes in a social insect model
inferredcites →https://doi.org/10.1371/journal.pbio.1001127openalex-snapshot
How Many Species Are There on Earth and in the Ocean?
inferredcites →https://doi.org/10.1371/journal.pone.0036393openalex-snapshot
Distinctive Gut Microbiota of Honey Bees Assessed Using Deep Sampling from Individual Worker Bees
inferredcites →https://doi.org/10.1371/journal.pone.0125152openalex-snapshot
16S rRNA Amplicon Sequencing Demonstrates that Indoor-Reared Bumblebees (Bombus terrestris) Harbor a Core Subset of Bacteria Normally Associated with the Wild Host
inferredcites →https://doi.org/10.1371/journal.pone.0185809openalex-snapshot
More than 75 percent decline over 27 years in total flying insect biomass in protected areas
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Land-Use Choices: Balancing Human Needs and Ecosystem Function
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Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences
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VSEARCH: a versatile open source tool for metagenomics

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Evaluation of Natural and Commercial Bombus terrestris dalmatinus Colonies in Terms of Parasite Prevalence in Antalya Region
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Diesel exhaust particles alter gut microbiome and gene expression in the bumblebee Bombus terrestris
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Exploring climate‐related gut microbiome variation in bumble bees: An experimental and observational perspective
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Sugar Concentration, Nitrogen Availability, and Phylogenetic Factors Determine the Ability of Acinetobacter spp. and Rosenbergiella spp. to Grow in Floral Nectar
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The wild solitary bees Andrena vaga, Anthophora plumipes, Colletes cunicularius, and Osmia cornuta microbiota are host specific and dominated by endosymbionts and environmental microorganisms
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The Gut Microbiome of Two Wild Bumble Bee Species Native of South America: Bombus pauloensis and Bombus bellicosus
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Isolation and probiotic evaluation of Apilactobacillus kunkeei and Bombella sp. from Apis mellifera anatoliaca and Bombus terrestris
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Farysia magdalena sp. nov. and description of the anamorph of Anthracocystis heteropogonicola from the Americas
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PCR-Based Screening of Pathogens in Bombus terrestris Populations of Turkey
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Characterization of the Aedes albopictus (Diptera: Culicidae) holobiome: bacterial composition across land use type and mosquito sex in Malaysia
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Microbiota, pathogens, and parasites as mediators of tritrophic interactions between insect herbivores, plants, and pollinators
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Investigating the effects of glyphosate on the bumblebee proteome and microbiota
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The effects of glyphosate, pure or in herbicide formulation, on bumble bees and their gut microbial communities
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Composition and diversity of bacterial communities associated with honey bee foragers from two contrasting environments
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Urbanization impoverishes taxonomic but not functional diversity of the gut microbiota in a forest specialist ground beetle, Carabus convexus
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Parasite defense mechanisms in bees: behavior, immunity, antimicrobials, and symbionts
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Local habitat type influences bumble bee pathogen loads and bee species distributions
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Bees just wanna have fungi: a review of bee associations with nonpathogenic fungi
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Wild bee and pollen microbiomes across an urban–rural divide
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Caterpillar–parasitoid interactions: species-specific influences on host microbiome composition
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Supporting wild bee development with a bacterial symbiont
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Farysia photiniae sp. nov., an anamorphic yeast species isolated from plant leaves
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Phylogenomic analyses of Snodgrassella isolates from honeybees and bumblebees reveals taxonomic and functional diversity
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Species‐rich old grasslands have beneficial effects on the health and gut microbiome of bumblebees
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Impacts of a fungicide and an insecticide on pollinator visitation and wildflower fitness
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Genetic diversity of honeybee colonies predicts gut bacterial diversity of individual colony members
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Assessing pathogen risk for wild bumblebees ( Bombus spp., Apidae) in Canada
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Bee‐associated fungi mediate effects of fungicides on bumble bees
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Changes in bumblebee queen gut microbiotas during and after overwintering diapause
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Interactions between microsporidia and other members of the microbiome
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Microbiome assembly and maintenance across the lifespan of bumble bee workers
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Urbanization reduces gut bacterial microbiome diversity in a specialist ground beetle, Carabus convexus
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The impact of plant diversity and vegetation composition on bumblebee colony fitness
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Bumble bee gut microbial community structure differs between species and commercial suppliers, but metabolic potential remains largely consistent
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Phylogenomic Analyses of Snodgrassella Isolates from Honeybees and Bumblebees Reveal Taxonomic and Functional Diversity
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The Greenhouse Phyllosphere Microbiome and Associations with Introduced Bumblebees and Predatory Mites
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Regional biogeography of microbiota composition in the Chagas disease vector Rhodnius pallescens
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Microsporidian infection of mosquito larvae changes the host-associated microbiome towards the synthesis of antimicrobial factors
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Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal
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Genetic variation and microbiota in bumble bees cross-infected by different strains of C. bombi
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Assessing potential impact of gut microbiome disruptions on the environmental stress resilience of indoor-reared Bombus terrestris
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Bumble bee microbiota shows temporal succession and increase of lactic acid bacteria when exposed to outdoor environments
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Comparative Nanopore Sequencing-Based Evaluation of the Midgut Microbiota of the Summer Chafer (Amphimallon solstitiale L.) Associated with Possible Resistance to Entomopathogenic Nematodes
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Dominance of Fructose-Associated Fructobacillus in the Gut Microbiome of Bumblebees (Bombus terrestris) Inhabiting Natural Forest Meadows
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Additional file 1 of Shades of grey: host phenotype dependent effect of urbanization on the bacterial microbiome of a wild mammal
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