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Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina

https://doi.org/10.1371/journal.pone.0236135
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Seagrass‐associated fungal communities show distance decay of similarity that has implications for seagrass management and restoration
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ggplot2: Elegant Graphics for Data Analysis
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ggplot2
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Data Analysis
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Structural aspects of apoplast fungal hyphae in a marine angiosperm,Zostera muelleri Irmisch ex Aschers. (Zosteraceae)
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Diversity of Assimilatory Nitrate Reductase Genes From Plankton and Epiphytes Associated with a Seagrass Bed
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Communities of Cultivable Root Mycobionts of the Seagrass Posidonia oceanica in the Northwest Mediterranean Sea Are Dominated by a Hitherto Undescribed Pleosporalean Dark Septate Endophyte
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Anatomically and morphologically unique dark septate endophytic association in the roots of the Mediterranean endemic seagrass Posidonia oceanica
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The evolutionary phylogeny of the oomycete “fungi”
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Multiple Halophytophthora spp. and Phytophthora spp. including P. gemini, P. inundata and P. chesapeakensis sp. nov. isolated from the seagrass Zostera marina in the Northern hemisphere
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Phylogenetic diversity of endophyte assemblages associated with the tropical seagrass Enhalus acoroides in Thailand
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Classification of marine Ascomycota, Basidiomycota, Blastocladiomycota and Chytridiomycota
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Two new nitrogen-fixing bacteria from the rhizosphere of mangrove trees: Their isolation, identification and in vitro interaction with rhizosphere Staphylococcus sp.
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AMPLIFICATION AND DIRECT SEQUENCING OF FUNGAL RIBOSOMAL RNA GENES FOR PHYLOGENETICS
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Phytophthora gemini sp. nov., a new species isolated from the halophilic plant Zostera marina in the Netherlands
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Distribution and diversity of endophytes in seagrasses
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Saprolegnia parasitica, an oomycete pathogen with a fishy appetite: new challenges for an old problem
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Diversity, ecological role and potential biotechnological applications of marine fungi associated to the seagrass Posidonia oceanica
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A Novel Phagomyxid Parasite Produces Sporangia in Root Hair Galls of Eelgrass (Zostera marina)
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All that glitters is not Ramularia
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Fungal flora of Posidonia oceanica and its ecological significance
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Basic Local Alignment Search Tool
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Synergism between Phyllobacterium sp. (N2-fixer) and Bacillus licheniformis (P-solubilizer), both from a semiarid mangrove rhizosphere
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Molecular diversity of diazotrophs in oligotrophic tropical seagrass bed communities
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Ontogenetic transition from specialized root hairs to specific root-fungus symbiosis in the dominant Mediterranean seagrass Posidonia oceanica
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Labyrinthula Zosterae Sp. Nov. , The Causative Agent of Wasting Disease of Eelgrass, Zostera Marina
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Ribosomal Database Project: data and tools for high throughput rRNA analysis
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Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems
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Marine Phytophthora species can hamper conservation and restoration of vegetated coastal ecosystems
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Desulfovibrio zosterae sp. nov., a new sulfate reducer isolated from surface-sterilized roots of the seagrass Zostera marina
inferredcites →https://doi.org/10.1099/ijs.0.013516-0openalex-snapshot
Granulosicoccus coccoides sp. nov., isolated from leaves of seagrass (Zostera marina)
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Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov.
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Nitrogen Fixation Associated with Rinsed Roots and Rhizomes of the Eelgrass Zostera marina
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The importance of species sorting differs between habitat generalists and specialists in bacterial communities
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Investigating Deep Phylogenetic Relationships among Cyanobacteria and Plastids by Small Subunit rRNA Sequence Analysis1
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Two new nitrogen-fixing bacteria from the rhizosphere of mangrove trees: Their isolation, identification and in vitro interaction with rhizosphere Staphylococcus sp
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Two new nitrogen-fixing bacteria from the rhizosphere of mangrove trees: Their isolation, identification and in vitro interaction with rhizosphere Staphylococcus sp.
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Seagrass‐associated fungal communities follow Wallace's line, but host genotype does not structure fungal community
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Time to re‐think fungal ecology? Fungal ecological niches are often prejudged
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Lulwoana sp., a dark septate endophyte in roots of Posidonia oceanica (L.) Delile seagrass
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Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
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Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling
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Global-Scale Structure of the Eelgrass Microbiome
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Fungi and Bacteria in or on Leaves of Eelgrass ( Zostera marina L.) from Chesapeake Bay
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Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina
inferredcites →https://doi.org/10.1128/genomea.00023-17openalex-snapshot
Draft Genome Sequences of Pseudomonas moraviensis UCD-KL30, Vibrio ostreicida UCD-KL16, Colwellia sp. Strain UCD-KL20, Shewanella sp. Strain UCD-KL12, and Shewanella sp. Strain UCD-KL21, Isolated from Seagrass
inferredcites →https://doi.org/10.1128/genomea.00092-16openalex-snapshot
Draft Genome Sequences of Two Pseudoalteromonas porphyrae Strains Isolated from Seagrass Sediment
inferredcites →https://doi.org/10.1128/genomea.00116-16openalex-snapshot
Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina
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Draft Genome Sequence of Tenacibaculum soleae UCD-KL19
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Draft Genome Sequence of Pseudoalteromonas tetraodonis Strain UCD-SED8 (Phylum Gammaproteobacteria )
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Draft Genome Sequence of Bacillus vietnamensis Strain UCD-SED5 (Phylum Firmicutes )
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Filamentous fungi associated with the seagrass Zostera marina Linnaeus, 1753 of Rifovaya Bay (Peter the Great Bay, the Sea of Japan)
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Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire
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phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
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Antimicrobial Potential of Endophytic Fungi Derived from Three Seagrass Species: Cymodocea serrulata, Halophila ovalis and Thalassia hemprichii
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Multiple origins of downy mildews and mito-nuclear discordance within the paraphyletic genus Phytophthora
inferredcites →https://doi.org/10.1371/journal.pone.0236135openalex-snapshot
Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina
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Fungal endophytes of the seagrasses Halodule wrightii and Thalassia testudinum in the north-central Gulf of Mexico
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Phylogenetic community structure of fungal endophytes in seagrass species
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Are there more marine fungi to be described?
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A Global Crisis for Seagrass Ecosystems
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Reshaping Data with the reshape Package
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Contrasts between habitat generalists and specialists: an empirical extension to the basic metacommunity framework
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Labyrinthula zosterae sp. nov., the Causative Agent of Wasting Disease of Eelgrass, Zostera marina
inferredcites →https://doi.org/10.25338/b8hs5zopenalex-snapshot
Phylogenies of fungi isolated from the seagrass, Zostera marina
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dplyr: A Grammar of Data Manipulation
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patchwork: The Composer of Plots
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R: A Language and Environment for Statistical Computing
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Nitrogen Fixation (Acetylene Reduction) by Rhizosphere Sediments of the Eelgrass Zostera marina
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Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific
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Eelgrass Leaf Surface Microbiomes Are Locally Variable and Highly Correlated with Epibiotic Eukaryotes
inferredcites →https://doi.org/10.3389/fmicb.2018.00388openalex-snapshot
Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes
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Diversity and Applications of Endophytic Actinobacteria of Plants in Special and Other Ecological Niches
inferredcites →https://doi.org/10.3389/fmicb.2019.01011openalex-snapshot
Regional and Microenvironmental Scale Characterization of the Zostera muelleri Seagrass Microbiome
inferredcites →https://doi.org/10.3389/fmicb.2019.02476openalex-snapshot
Characterization of the Mycobiome of the Seagrass, Zostera marina, Reveals Putative Associations With Marine Chytrids
inferredcites →https://doi.org/10.3390/ijms160614039openalex-snapshot
Fungal Community Successions in Rhizosphere Sediment of Seagrasses Enhalus acoroides under PAHs Stress
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Rapid Metabolome and Bioactivity Profiling of Fungi Associated with the Leaf and Rhizosphere of the Baltic Seagrass Zostera marina
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Host and geographic structure of endophytic and endolichenic fungi at a continental scale
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Taxonomy, DNA barcoding and phylogeny of three new species of Pythium from Canada
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A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)
inferredcites →https://doi.org/10.3897/mycokeys.55.35682openalex-snapshot
Extensive sampling and high-throughput sequencing reveal Posidoniomyces atricolor gen. et sp. nov. (Aigialaceae, Pleosporales) as the dominant root mycobiont of the dominant Mediterranean seagrass Posidonia oceanica
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Identification of Two Novel Amalgaviruses in the Common Eelgrass (Zostera marina) and in Silico Analysis of the Amalgavirus +1 Programmed Ribosomal Frameshifting Sites
inferredcites →https://doi.org/10.5943/mycosphere/6/3/10openalex-snapshot
Endophytic fungi of marine algae and seagrasses: a novel source of chitin modifying enzymes
inferredcites →https://doi.org/10.7717/peerj.3246openalex-snapshot
Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge
inferredcites →https://doi.org/10.7717/peerj.3674openalex-snapshot
Microbiome succession during ammonification in eelgrass bed sediments
inferredcites →https://doi.org/10.7717/peerj.960openalex-snapshot
Swabs to genomes: a comprehensive workflow

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Eukaryotic metagenome-assembled genomes recovered from deep metagenomic sequencing of the seagrass, Zostera marina, include a novel chytrid in the order Lobulomycetales
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Global diversity and biogeography of the Zostera marina mycobiome
inferred← citeshttps://doi.org/10.1101/2023.08.21.554113openalex-snapshot
Epiphytic and endophytic microbiome of the seagrass Zostera marina : Do they contribute to pathogen reduction in seawater?
inferred← citeshttps://doi.org/10.1101/2024.12.17.629027openalex-snapshot
Genomic streamlining of seagrass-associated Colletotrichum sp. may be related to its adaptation to a marine monocot host
inferred← citeshttps://doi.org/10.1101/2025.02.11.637735openalex-snapshot
Eukaryotic MAGs recovered from deep metagenomic sequencing of the seagrass, Zostera marina, include a novel chytrid in the order Lobulomycetales
inferred← citeshttps://doi.org/10.1111/1462-2920.16582openalex-snapshot
Manipulation of the seagrass‐associated microbiome reduces disease severity
inferred← citeshttps://doi.org/10.1111/maec.70070openalex-snapshot
Marine Fungi in Coral Reefs: Interactions and Ecological Significance
inferred← citeshttps://doi.org/10.1128/aem.01754-24openalex-snapshot
Rhizosphere microbiomes are closely linked to seagrass species: a comparative study of three coastal seagrasses
inferred← citeshttps://doi.org/10.1128/aem.02795-20openalex-snapshot
Global Diversity and Biogeography of the Zostera marina Mycobiome
inferred← citeshttps://doi.org/10.1134/s1062359025601946openalex-snapshot
Diversity of Micromycete Metabolites in Halophyte Plants on the White Sea Coast
inferred← citeshttps://doi.org/10.1134/s1063074021060080openalex-snapshot
Mycotoxins in Macroalgae from the Velikaya Salma Strait of the Kandalaksha Gulf of the White Sea
inferred← citeshttps://doi.org/10.1146/annurev-micro-051421-121352openalex-snapshot
Evolution and Physiology of Amphibious Yeasts
inferred← citeshttps://doi.org/10.1186/s13717-026-00687-4openalex-snapshot
Mariculture and seagrass restoration influence water nutrients and community assembly processes in seagrass ecosystems
inferred← citeshttps://doi.org/10.1186/s40168-024-01759-3openalex-snapshot
Novel insights into the rhizosphere and seawater microbiome of Zostera marina in diverse mariculture zones
inferred← citeshttps://doi.org/10.12688/f1000research.38156.1openalex-snapshot
Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
inferred← citeshttps://doi.org/10.1371/journal.pone.0251536openalex-snapshot
Correction: Fungi, bacteria and oomycota opportunistically isolated from the seagrass, Zostera marina
inferred← citeshttps://doi.org/10.1515/bot-2023-0015openalex-snapshot
Recent progress in marine mycological research in different countries, and prospects for future developments worldwide
inferred← citeshttps://doi.org/10.21203/rs.3.rs-539541/v1openalex-snapshot
Metagenomics Study of Fungi and Fungi-Like Organisms Associated With the Seagrass Halophila Stipulacea (Forssk.) Asch. From Al-Leith Mangroves, Saudi Arabia
inferred← citeshttps://doi.org/10.3389/fevo.2020.605304openalex-snapshot
Host-Specificity and Core Taxa of Seagrass Leaf Microbiome Identified Across Tissue Age and Geographical Regions
inferred← citeshttps://doi.org/10.3389/fmars.2021.659180openalex-snapshot
Spatial and Structural Factors Shape Seagrass-Associated Bacterial Communities in Singapore and Peninsular Malaysia
inferred← citeshttps://doi.org/10.3389/fmars.2023.1227560openalex-snapshot
Microbiome-assisted restoration of degraded marine habitats: a new nature-based solution?
inferred← citeshttps://doi.org/10.3389/fmars.2024.1359610openalex-snapshot
Fungal endophytes from Thalassia testudinum show bioactivity against the seagrass pathogen, Labyrinthula spp.
inferred← citeshttps://doi.org/10.3389/fmicb.2021.671342openalex-snapshot
Seasonal Dynamics of Epiphytic Microbial Communities on Marine Macrophyte Surfaces
inferred← citeshttps://doi.org/10.3389/fmicb.2021.755919openalex-snapshot
Multigene Phylogeny, Diversity and Antimicrobial Potential of Endophytic Sordariomycetes From Rosa roxburghii
inferred← citeshttps://doi.org/10.3390/encyclopedia2010037openalex-snapshot
Marine Fungi: Opportunities and Challenges
inferred← citeshttps://doi.org/10.3390/fermentation9080736openalex-snapshot
The Microbial Community in a Substrate of Solid-State Fermentation by Lentinula edodes: A Preliminary Study
inferred← citeshttps://doi.org/10.3390/jof10010067openalex-snapshot
Why Are There So Few Basidiomycota and Basal Fungi as Endophytes? A Review
inferred← citeshttps://doi.org/10.3390/jof10090627openalex-snapshot
Exploring Fungal Diversity in Seagrass Ecosystems for Pharmaceutical and Ecological Insights
inferred← citeshttps://doi.org/10.3390/microorganisms10101946openalex-snapshot
Emerging Research Topics in the Vibrionaceae and the Squid–Vibrio Symbiosis
inferred← citeshttps://doi.org/10.3390/w17081151openalex-snapshot
A Helping Hand: Fungi, as Well as Bacteria, Support Ecophysiological Descriptors to Depict the Posidonia oceanica Conservation Status
inferred← citeshttps://doi.org/10.34133/ehs.0539openalex-snapshot
Nutrient-Driven Microbial Shifts Amplify Carbon Mineralization in Seagrass Sediments
inferred← citeshttps://doi.org/10.7717/peerj.16619openalex-snapshot
Germination of pecan seeds changes the microbial community
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