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Phylogenomics of trans-Andean tetras of the genus Hyphessobrycon Durbin 1908 (Stethaprioninae: Characidae) and colonization patterns of Middle America
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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The Development of the Amazonian Mega‐Wetland (Miocene; Brazil, Colombia, Peru, Bolivia)
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Global river hydrography and network routing: baseline data and new approaches to study the world's large river systems
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WorldClim 2: new 1‐km spatial resolution climate surfaces for global land areas
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Concordance trees, concordance factors, and the exploration of reticulate genealogy
inferredcites →https://doi.org/10.1007/978-1-4613-2351-8_4openalex-snapshot
Mid America: Tectonic Setting for the Pacific Margin from Southern Mexico to Northwestern Colombia
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Algorithmic improvements to species delimitation and phylogeny estimation under the multispecies coalescent
inferredcites →https://doi.org/10.1016/j.jsames.2005.07.010openalex-snapshot
Miocene tectonism and the separation of cis- and trans-Andean river basins: Evidence from Neotropical fishes
inferredcites →https://doi.org/10.1016/j.ympev.2009.09.017openalex-snapshot
Phylogeny, biogeography, and electric signal evolution of Neotropical knifefishes of the genus Gymnotus (Osteichthyes: Gymnotidae)
inferredcites →https://doi.org/10.1016/j.ympev.2017.10.008openalex-snapshot
Exon-based phylogenomics strengthens the phylogeny of Neotropical cichlids and identifies remaining conflicting clades (Cichliformes: Cichlidae: Cichlinae)
inferredcites →https://doi.org/10.1016/j.ympev.2021.107092openalex-snapshot
Collapsing dubiously resolved gene-tree branches in phylogenomic coalescent analyses
inferredcites →https://doi.org/10.1016/j.ympev.2022.107462openalex-snapshot
Phylogenomic analysis of the Neotropical fish subfamily Characinae using ultraconserved elements (Teleostei: Characidae)
inferredcites →https://doi.org/10.1016/j.yqres.2012.12.007openalex-snapshot
Consensus between genes and stones in the biogeographic and evolutionary history of Central America
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1016/s0169-5347(97)89791-1openalex-snapshot
Evolution and environment in tropical America
inferredcites →https://doi.org/10.1016/s1055-7903(02)00224-5openalex-snapshot
Evolutionary history of the genus Rhamdia (Teleostei: Pimelodidae) in Central America
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/s41559-016-0020openalex-snapshot
Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life
inferredcites →https://doi.org/10.1038/s41597-019-0300-6openalex-snapshot
Global hydro-environmental sub-basin and river reach characteristics at high spatial resolution
inferredcites →https://doi.org/10.1038/s41598-020-59519-wopenalex-snapshot
Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements
inferredcites →https://doi.org/10.1046/j.1365-294x.1998.00358.xopenalex-snapshot
Comparative mtDNA phylogeography of neotropical freshwater fishes: testing shared history to infer the evolutionary landscape of lower Central America
inferredcites →https://doi.org/10.1073/pnas.1423853112openalex-snapshot
Biological evidence supports an early and complex emergence of the Isthmus of Panama
inferredcites →https://doi.org/10.1080/00222931308693424openalex-snapshot
LVI.—The fishes of the San Juan river, Colombia
inferredcites →https://doi.org/10.1080/10635150701883881openalex-snapshot
Maximum Likelihood Inference of Geographic Range Evolution by Dispersal, Local Extinction, and Cladogenesis
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
inferredcites →https://doi.org/10.1093/bioinformatics/btaa1010openalex-snapshot
SODA: multi-locus species delimitation using quartet frequencies
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btq243openalex-snapshot
The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell
inferredcites →https://doi.org/10.1093/bioinformatics/bts184openalex-snapshot
ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot
Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btu770openalex-snapshot
DISSECT: an assignment-free Bayesian discovery method for species delimitation under the multispecies coalescent
inferredcites →https://doi.org/10.1093/bioinformatics/btv646openalex-snapshot
PHYLUCE is a software package for the analysis of conserved genomic loci
inferredcites →https://doi.org/10.1093/bioinformatics/bty560openalex-snapshot
fastp: an ultra-fast all-in-one FASTQ preprocessor
inferredcites →https://doi.org/10.1093/gbe/evab161openalex-snapshot
Comparing Ultraconserved Elements and Exons for Phylogenomic Analyses of Middle American Cichlids: When Data Agree to Disagree
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
inferredcites →https://doi.org/10.1093/molbev/mss075openalex-snapshot
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msw079openalex-snapshot
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
inferredcites →https://doi.org/10.1093/molbev/msx281openalex-snapshot
UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/molbev/msz257openalex-snapshot
RASP 4: Ancestral State Reconstruction Tool for Multiple Genes and Characters
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026334openalex-snapshot
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
inferredcites →https://doi.org/10.1093/sysbio/46.1.195openalex-snapshot
Dispersal-Vicariance Analysis: A New Approach to the Quantification of Historical Biogeography
inferredcites →https://doi.org/10.1093/sysbio/syab040openalex-snapshot
Accelerated Diversification Explains the Exceptional Species Richness of Tropical Characoid Fishes
inferredcites →https://doi.org/10.1093/sysbio/syac002openalex-snapshot
On the Need for New Measures of Phylogenomic Support
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
inferredcites →https://doi.org/10.1093/sysbio/syt040openalex-snapshot
Bayesian Analysis of Biogeography when the Number of Areas is Large
inferredcites →https://doi.org/10.1093/sysbio/syu056openalex-snapshot
Model Selection in Historical Biogeography Reveals that Founder-Event Speciation Is a Crucial Process in Island Clades
inferredcites →https://doi.org/10.1093/sysbio/syw101openalex-snapshot
Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses
inferredcites →https://doi.org/10.1093/sysbio/syx038openalex-snapshot
Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes
inferredcites →https://doi.org/10.1093/sysbio/syy085openalex-snapshot
Resolving Deep Nodes in an Ancient Radiation of Neotropical Fishes in the Presence of Conflicting Signals from Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/zoolinnean/zlaa019openalex-snapshot
Opening the Trojan horse: phylogeny of Astyanax, two new genera and resurrection of Psalidodon (Teleostei: Characidae)
inferredcites →https://doi.org/10.1111/brv.12076openalex-snapshot
Phylogeography and biogeography of the lower C entral A merican N eotropics: diversification between two continents and between two seas
inferredcites →https://doi.org/10.1111/cla.12345openalex-snapshot
Morphology, molecules and the phylogeny of Characidae (Teleostei, Characiformes)
inferredcites →https://doi.org/10.1111/ele.12319openalex-snapshot
Global imprint of historical connectivity on freshwater fish biodiversity
inferredcites →https://doi.org/10.1111/j.1095-8312.2006.00619.xopenalex-snapshot
Colonization, population expansion, and lineage turnover: phylogeography of Mesoamerican characiform fish
inferredcites →https://doi.org/10.1111/j.1095-8649.2008.02080.xopenalex-snapshot
The campaign to DNA barcode all fishes, FISH‐BOL
inferredcites →https://doi.org/10.1111/j.1096-0031.2009.00262.xopenalex-snapshot
Weighted parsimony phylogeny of the family Characidae (Teleostei: Characiformes)
inferredcites →https://doi.org/10.1111/j.1365-2699.2005.01317.xopenalex-snapshot
The biogeography of lower Mesoamerican freshwater fishes
inferredcites →https://doi.org/10.1111/jbi.12309openalex-snapshot
Miocene and Pliocene colonization of the Central American Isthmus by the weakly electric fish B rachyhypopomus occidentalis (Hypopomidae, Gymnotiformes)
inferredcites →https://doi.org/10.1111/jbi.13173openalex-snapshot
Conceptual and statistical problems with the DEC +J model of founder‐event speciation and its comparison with DEC via model selection
inferredcites →https://doi.org/10.1111/jeb.13196openalex-snapshot
Phylogenomics of pike cichlids (Cichlidae: Crenicichla ): the rapid ecological speciation of an incipient species flock
inferredcites →https://doi.org/10.1111/jfb.14319openalex-snapshot
A new species of Hyphessobrycon Durbin (Characiformes: Characidae) from the western Amazon basin in Colombia and Peru
inferredcites →https://doi.org/10.1111/zsc.12493openalex-snapshot
Evolutionary history of Heptapteridae catfishes using ultraconserved elements (Teleostei, Siluriformes)
inferredcites →https://doi.org/10.1126/science.235.4793.1156openalex-snapshot
Chronology of Fluctuating Sea Levels Since the Triassic
inferredcites →https://doi.org/10.1130/0091-7613(1995)023<0237:ataacf>2.3.co;2openalex-snapshot
Andean tectonics as a cause for changing drainage patterns in Miocene northern South America
inferredcites →https://doi.org/10.1130/b30528.1openalex-snapshot
Evidence for middle Eocene and younger land emergence in central Panama: Implications for Isthmus closure
inferredcites →https://doi.org/10.1130/spe295-p35openalex-snapshot
Cenozoic magmatic phases of the Costa Rican island arc (Cordillera de Talamanca)
inferredcites →https://doi.org/10.1146/annurev-ecolsys-011620-031032openalex-snapshot
Diversification of Neotropical Freshwater Fishes
inferredcites →https://doi.org/10.11646/zootaxa.2349.1.4openalex-snapshot
A new species of Hyphessobrycon (Teleostei: Characiformes: Characidae) from the San Juan River drainage, Pacific versant of Colombia
inferredcites →https://doi.org/10.11646/zootaxa.4751.3.1openalex-snapshot
Taxonomic review of the Hyphessobrycon panamensis species-group (Characiformes: Characidae)
inferredcites →https://doi.org/10.11646/zootaxa.4859.2.6openalex-snapshot
A new Hyphessobrycon (Characiformes: Characidae) of the Hyphessobrycon heterorhabdus species-group from the Central Amazon basin, Brazil
inferredcites →https://doi.org/10.11646/zootaxa.5116.2.4openalex-snapshot
A new sexually dimorphic Hyphessobrycon from the western Amazon basin (Characiformes: Characidae)
inferredcites →https://doi.org/10.1177/030913339501900402openalex-snapshot
Drainage rearrangement by river capture, beheading and diversion
inferredcites →https://doi.org/10.1186/1471-2148-11-275openalex-snapshot
Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling
inferredcites →https://doi.org/10.1186/1471-2148-7-214openalex-snapshot
BEAST: Bayesian evolutionary analysis by sampling trees
inferredcites →https://doi.org/10.1186/1471-2148-8-340openalex-snapshot
Evolutionary history of the fish genus Astyanax Baird & Girard (1854) (Actinopterygii, Characidae) in Mesoamerica reveals multiple morphological homoplasies
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1201/9780203947043.pt2openalex-snapshot
Geomorphology and physiographic provinces
inferredcites →https://doi.org/10.1206/0003-0090.431.1.1openalex-snapshot
The Fishes of the Amazon: Distribution and Biogeographical Patterns, with a Comprehensive List of Species
inferredcites →https://doi.org/10.1371/journal.pone.0042543openalex-snapshot
Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels
inferredcites →https://doi.org/10.1525/california/9780520268685.003.0001openalex-snapshot
Introduction to Neotropical Freshwaters
inferredcites →https://doi.org/10.1525/cond.2011.100093openalex-snapshot
Middle America, not Mesoamerica, is the Accurate Term for Biogeography
inferredcites →https://doi.org/10.15517/rbt.v14i2.28534openalex-snapshot
New Species and New Records of Costa Rican Freshwater Fishes with a Tentative List of Species
inferredcites →https://doi.org/10.15517/rbt.v61i1.10944openalex-snapshot
Una nueva especie de Hyphessobrycon (Characiformes: Characidae) de la cuenca del río Telembí, vertiente sur del Pacífico, Colombia
inferredcites →https://doi.org/10.1590/1982-0224-20140173openalex-snapshot
Redescription and osteology of Hyphessobrycon compressus (Meek) (Teleostei: Characidae), type species of the genus
inferredcites →https://doi.org/10.1590/1982-0224-2020-0102openalex-snapshot
A new Hyphessobrycon (Characiformes: Characidae) of the Hyphessobrycon heterorhabdus species-group from the lower Amazon basin, Brazil
inferredcites →https://doi.org/10.1590/1982-0224-2021-0119openalex-snapshot
The emerald green tetra: a new restricted-range Hyphessobrycon (Characiformes: Characidae) from the upper rio Juruena, Chapada dos Parecis, Brazil
inferredcites →https://doi.org/10.1590/s1679-62252010000100001openalex-snapshot
Hyphessobrycon nicolasi (Teleostei: Characidae) a new species from the Uruguay River basin in the Mesopotamian Region, Argentina
inferredcites →https://doi.org/10.1590/s1679-62252010000300001openalex-snapshot
Phylogeny of the family Characidae (Teleostei: Characiformes): from characters to taxonomy
inferredcites →https://doi.org/10.1643/asihcodons2020openalex-snapshot
Codes for Natural History Collections in Ichthyology and Herpetology
inferredcites →https://doi.org/10.1643/cg-18-139openalex-snapshot
A Target Enrichment Bait Set for Studying Relationships among Ostariophysan Fishes
inferredcites →https://doi.org/10.22541/au.165167823.30911834/v1openalex-snapshot
SEGUL: An ultrafast, memory-efficient alignment manipulation and summary tool for phylogenomics
inferredcites →https://doi.org/10.2307/1441405openalex-snapshot
Derivation of the Freshwater Fish Fauna of Central America
inferredcites →https://doi.org/10.2747/0020-6814.48.9.791openalex-snapshot
Meso-Cenozoic Caribbean Paleogeography: Implications for the Historical Biogeography of the Region
inferredcites →https://doi.org/10.3897/zookeys.454.6954openalex-snapshot
A new species of Hemibrycon (Characiformes, Characidae) from the upper San Juan River drainage, Pacific versant, Colombia
inferredcites →https://doi.org/10.3897/zse.95.34069openalex-snapshot
A new cryptic species of Hyphessobrycon Durbin, 1908 (Characiformes, Characidae) from the Eastern Amazon, revealed by integrative taxonomy
inferredcites →https://doi.org/10.5281/zenodo.13653878openalex-snapshot
Preliminary descriptions of new genera and species of tetragonopterid characins (Zoölogical Results of the Thayer Brazilian expedition.)
inferredcites →https://doi.org/10.58782/flmnh.bolx4448openalex-snapshot
Studies on Fishes of the Family Characidae. No. 16-A New Hyphessobrycon from Costa Rica
inferredcites →https://doi.org/10.5962/bhl.title.15940openalex-snapshot
The fresh-water fishes of Mexico north of the isthmus of Tehuantepec
inferredcites →https://doi.org/10.5962/bhl.title.2229openalex-snapshot
The fresh-water fishes of Mexico north of the isthmus of Tehuantepec
inferredcites →https://doi.org/10.5962/p.234839openalex-snapshot
The fishes of western South America. Part I. The fresh-water fishes of northwestern South America, including Colombia, Panama, and the Pacific slopes of Ecuador and Peru, together with an appendix upon the fishes of the Rio Meta in Colombia
inferredcites →https://doi.org/10.6079/j9illopenalex-snapshot
Illumiprocessor - software for Illumina read quality filtering
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11606/1807-0205/2025.65.011zenodo-depositor-declared
A new Hyphessobrycon (Characiformes: Acestrorhamphidae) from the Central Amazon basin, Brazil
inferred← citeshttps://doi.org/10.11646/zootaxa.5618.1.2zenodo-depositor-declared
Evolutionary history of the polymorphic Coatzacoalcos River endemic Thorichthys panchovillai (Cichliformes: Cichlidae)
inferred← citeshttps://doi.org/10.1590/1982-0224-2023-0127zenodo-depositor-declared
Redescription of Hyphessobrycon cachimbensis (Characiformes: Characidae) with the description of a new congener from the Serra do Cachimbo, Brazil
inferred← citeshttps://doi.org/10.3897/zookeys.1290.182593zenodo-depositor-declared
Delimiting Andean catfish species of the families Astroblepidae and Loricariidae (Ostariophysi, Siluriformes) in the Peruvian Andes using DNA barcodes
inferred← citeshttps://doi.org/10.1007/978-3-032-09328-8_21openalex-snapshot
Origins of the Richest Continental Fauna: Major Macroevolutionary Events
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlae101openalex-snapshot
Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)
inferred← citeshttps://doi.org/10.1101/2024.03.06.583817openalex-snapshot
Exploring the mitochondrial genomes and phylogenetic relationships of eleven Bryconidae species
inferred← citeshttps://doi.org/10.1101/2024.12.22.630025openalex-snapshot
Geography is a stronger predictor of diversification of monogenean parasites (Platyhelminthes) than host relatedness in characid fishes of Middle America
inferred← citeshttps://doi.org/10.1111/jfb.15777openalex-snapshot
Phylogeographic patterns of Cyphocharax from trans‐ Andean rivers and northward expansion to lower Central America ( Teleostei, Curimatidae )
inferred← citeshttps://doi.org/10.1111/jse.70003openalex-snapshot
Evolutionary history of Middle American Rhamdia (Siluriformes: Heptapteridae) inferred from comparative mitogenomic data: Insights on historical biogeography and cave colonization in the group
inferred← citeshttps://doi.org/10.1111/zsc.12676openalex-snapshot
Phylogenomic reconstruction influenced by assembly and annotation parameters: Using whole genome data to unravel the relationships of Spionidae (Annelida)
inferred← citeshttps://doi.org/10.1371/journal.pone.0298970openalex-snapshot
New records of native and introduced fish species in a river basin of Western Ecuador, the Chocó-Darien Ecoregion, using DNA barcoding
inferred← citeshttps://doi.org/10.1371/journal.pone.0300830openalex-snapshot
Exploring the mitochondrial genomes and phylogenetic relationships of trans-Andean Bryconidae species (Actinopterygii: Ostariophysi: Characiformes)
inferred← citeshttps://doi.org/10.1371/journal.pone.0316974openalex-snapshot
Geography is a stronger predictor of diversification of monogenean parasites (Platyhelminthes) than host relatedness in characin fishes of Middle America
inferred← citeshttps://doi.org/10.1590/1982-0224-2025-0119openalex-snapshot
Integrative cytogenetic and molecular evidence reveals a new cryptic lineage within the “Parodon suborbitalis complex” (Characiformes: Parodontidae)
inferred← citeshttps://doi.org/10.3390/ani16152415openalex-snapshot
Complete Mitogenomes of Three Hyphessobrycon (Characiformes, Characidae) Species and Phylogenetic Analysis of Characidae
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