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Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10
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1 of the 82 references listed on this page is in the Retraction Watch database as retracted (export 2026-10-28): 10.1073/pnas.1301810110 (notice 2017-08-30).
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Improving biosensor analysis
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Distinct biological and serological properties of human immunodeficiency viruses from the brain
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Shape complementarity at protein–protein interfaces
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Multi‐constraint computational design suggests that native sequences of germline antibody H3 loops are nearly optimal for conformational flexibility
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Shape Complementarity at Protein/Protein Interfaces
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Germline-like predecessors of broadly neutralizing antibodies lack measurable binding to HIV-1 envelope glycoproteins: Implications for evasion of immune responses and design of vaccine immunogens
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Somatic Mutations of the Immunoglobulin Framework Are Generally Required for Broad and Potent HIV-1 Neutralization
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HIV vaccine design: the neutralizing antibody conundrum
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Broadly Neutralizing Anti-HIV Antibody 4E10 Recognizes a Helical Conformation of a Highly Conserved Fusion-Associated Motif in gp41
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Differential Epitope Positioning within the Germline Antibody Paratope Enhances Promiscuity in the Primary Immune Response
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Progress in HIV-1 vaccine development
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HotPatch: A Statistical A pproach to Finding Biologically Relevant Features on Protein Surfaces
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Computational Protein Design Using Flexible Backbone Remodeling and Resurfacing: Case Studies in Structure-Based Antigen Design
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Computational Design of Epitope-Scaffolds Allows Induction of Antibodies Specific for a Poorly Immunogenic HIV Vaccine Epitope
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HIV-1 antibodies from infection and vaccination: insights for guiding vaccine design
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Structural Plasticity and the Evolution of Antibody Affinity and Specificity
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[20] Processing of X-ray diffraction data collected in oscillation mode
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Structural differences among monoclonal antibodies with distinct fine specificities and kinetic properties
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Maturation of an Antibody Response Is Governed by Modulations in Flexibility of the Antigen-Combining Site
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Affinity Dependence of the B Cell Response to Antigen: A Threshold, a Ceiling, and the Importance of Off-Rate
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A Comparative Analysis of the Immunological Evolution of Antibody 28B4
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A Theory of the Structure and Process of Formation of Antibodies*
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Germline V‐genes sculpt the binding site of a family of antibodies neutralizing human cytomegalovirus
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Structural and genetic basis for development of broadly neutralizing influenza antibodies
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Autoantigen discovery with a synthetic human peptidome
inferredcites →https://doi.org/10.1038/nsb1014openalex-snapshot
Germline antibody recognition of distinct carbohydrate epitopes
inferredcites →https://doi.org/10.1038/nsmb.2154openalex-snapshot
Antibody mechanics on a membrane-bound HIV segment essential for GP41-targeted viral neutralization
inferredcites →https://doi.org/10.1073/pnas.0908713106openalex-snapshot
Role of HIV membrane in neutralization by two broadly neutralizing antibodies
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Scaffolding to build a rational vaccine design strategy
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Preconfiguration of the antigen-binding site during affinity maturation of a broadly neutralizing influenza virus antibody
inferredcites →https://doi.org/10.1073/pnas.1301810110openalex-snapshot
RETRACTED: Somatic hypermutation maintains antibody thermodynamic stability during affinity maturation
inferredcites →https://doi.org/10.1073/pnas.1303682110openalex-snapshot
Structural basis for HIV-1 gp120 recognition by a germ-line version of a broadly neutralizing antibody
inferredcites →https://doi.org/10.1073/pnas.92.5.1254openalex-snapshot
Kinetic and affinity limits on antibodies produced during immune responses.
inferredcites →https://doi.org/10.1084/jem.132.2.211openalex-snapshot
AN ANALYSIS OF THE SEQUENCES OF THE VARIABLE REGIONS OF BENCE JONES PROTEINS AND MYELOMA LIGHT CHAINS AND THEIR IMPLICATIONS FOR ANTIBODY COMPLEMENTARITY
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B cells are exquisitely sensitive to central tolerance and receptor editing induced by ultralow affinity, membrane-bound antigen.
inferredcites →https://doi.org/10.1084/jem.20101907openalex-snapshot
MPER-specific antibodies induce gp120 shedding and irreversibly neutralize HIV-1
inferredcites →https://doi.org/10.1084/jem.20122824openalex-snapshot
Engineering HIV envelope protein to activate germline B cell receptors of broadly neutralizing anti-CD4 binding site antibodies
inferredcites →https://doi.org/10.1093/bioinformatics/btk004openalex-snapshot
SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations
inferredcites →https://doi.org/10.1093/bioinformatics/btm147openalex-snapshot
iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences
inferredcites →https://doi.org/10.1093/intimm/10.12.1801openalex-snapshot
Preferred CDRH3 lengths for antibodies with defined specificities.
inferredcites →https://doi.org/10.1093/nar/28.1.214openalex-snapshot
Kabat Database and its applications: 30 years after the first variability plot
inferredcites →https://doi.org/10.1093/nar/gkh412openalex-snapshot
IMGT/V-QUEST, an integrated software program for immunoglobulin and T cell receptor V-J and V-D-J rearrangement analysis
inferredcites →https://doi.org/10.1093/nar/gkm216openalex-snapshot
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids
inferredcites →https://doi.org/10.1093/nar/gkn316openalex-snapshot
IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis
inferredcites →https://doi.org/10.1097/coh.0b013e328361d178openalex-snapshot
Progress in HIV-1 vaccine development
inferredcites →https://doi.org/10.1097/qad.0b013e32805e8727openalex-snapshot
HIV-1 subtype A envelope variants from early in infection have variable sensitivity to neutralization and to inhibitors of viral entry
inferredcites →https://doi.org/10.1097/tp.0b013e31820f07ffopenalex-snapshot
Antagonistic and Agonistic Anti-canine CD28 Monoclonal Antibodies: Tools for Allogeneic Transplantation
inferredcites →https://doi.org/10.1107/s0021889807021206openalex-snapshot
Phaser crystallographic software
inferredcites →https://doi.org/10.1107/s0021889892009944openalex-snapshot
PROCHECK: a program to check the stereochemical quality of protein structures
inferredcites →https://doi.org/10.1107/s0907444903008126openalex-snapshot
A graphical user interface to the CCP 4 program suite
inferredcites →https://doi.org/10.1107/s0907444904019158openalex-snapshot
Coot : model-building tools for molecular graphics
inferredcites →https://doi.org/10.1107/s0907444994003112openalex-snapshot
The CCP4 suite: programs for protein crystallography
inferredcites →https://doi.org/10.1107/s0907444996012255openalex-snapshot
Refinement of Macromolecular Structures by the Maximum-Likelihood Method
inferredcites →https://doi.org/10.1107/s090744499900935xopenalex-snapshot
The finer things in X-ray diffraction data collection
inferredcites →https://doi.org/10.1111/imr.12073openalex-snapshot
A global approach to HIV ‐1 vaccine development
inferredcites →https://doi.org/10.1126/science.1125703openalex-snapshot
Extrafollicular Activation of Lymph Node B Cells by Antigen-Bearing Dendritic Cells
inferredcites →https://doi.org/10.1126/science.1192819openalex-snapshot
Structural Basis for Broad and Potent Neutralization of HIV-1 by Antibody VRC01
inferredcites →https://doi.org/10.1126/science.1207227openalex-snapshot
Sequence and Structural Convergence of Broad and Potent HIV Antibodies That Mimic CD4 Binding
inferredcites →https://doi.org/10.1126/science.1207532openalex-snapshot
Focused Evolution of HIV-1 Neutralizing Antibodies Revealed by Structures and Deep Sequencing
inferredcites →https://doi.org/10.1126/science.1241144openalex-snapshot
Antibodies in HIV-1 Vaccine Development and Therapy
inferredcites →https://doi.org/10.1126/science.276.5319.1665openalex-snapshot
Structural Insights into the Evolution of an Antibody Combining Site
inferredcites →https://doi.org/10.1128/jvi.00411-11openalex-snapshot
Binding Interactions between Soluble HIV Envelope Glycoproteins and Quaternary-Structure-Specific Monoclonal Antibodies PG9 and PG16
inferredcites →https://doi.org/10.1128/jvi.00956-06openalex-snapshot
Antibody Responses Elicited in Macaques Immunized with Human Immunodeficiency Virus Type 1 (HIV-1) SF162-Derived gp140 Envelope Immunogens: Comparison with Those Elicited during Homologous Simian/Human Immunodeficiency Virus SHIVSF162P4and Heterologous HIV-1 Infection
inferredcites →https://doi.org/10.1128/jvi.02113-09openalex-snapshot
Interactions between Lipids and Human Anti-HIV Antibody 4E10 Can Be Reduced without Ablating Neutralizing Activity
inferredcites →https://doi.org/10.1128/jvi.02357-09openalex-snapshot
Ablation of the Complementarity-Determining Region H3 Apex of the Anti-HIV-1 Broadly Neutralizing Antibody 2F5 Abrogates Neutralizing Capacity without Affecting Core Epitope Binding
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Neutralization of diverse human immunodeficiency virus type 1 variants by an anti-V3 human monoclonal antibody
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Recognition properties of a panel of human recombinant Fab fragments to the CD4 binding site of gp120 that show differing abilities to neutralize human immunodeficiency virus type 1
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Broadly Neutralizing Antibodies Targeted to the Membrane-Proximal External Region of Human Immunodeficiency Virus Type 1 Glycoprotein gp41
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Comprehensive Cross-Clade Neutralization Analysis of a Panel of Anti-Human Immunodeficiency Virus Type 1 Monoclonal Antibodies
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Three-Dimensional Structure of Immunoglobulins
inferredcites →https://doi.org/10.1186/1471-2105-9-s12-s20openalex-snapshot
Ab-origin: an enhanced tool to identify the sourcing gene segments in germline for rearranged antibodies
inferredcites →https://doi.org/10.1371/journal.pone.0016857openalex-snapshot
Comparison of Antibody Repertoires Produced by HIV-1 Infection, Other Chronic and Acute Infections, and Systemic Autoimmune Disease
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Envelope Deglycosylation Enhances Antigenicity of HIV-1 gp41 Epitopes for Both Broad Neutralizing Antibodies and Their Unmutated Ancestor Antibodies
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Autoreactivity and Exceptional CDR Plasticity (but Not Unusual Polyspecificity) Hinder Elicitation of the Anti-HIV Antibody 4E10
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Conformational selection or induced fit? 50 years of debate resolved
inferredcites →https://doi.org/10.4049/jimmunol.1201303openalex-snapshot
Shaping of Human Germline IgH Repertoires Revealed by Deep Sequencing
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Reversion of Somatic Mutations of the Respiratory Syncytial Virus–Specific Human Monoclonal Antibody Fab19 Reveal a Direct Relationship between Association Rate and Neutralizing Potency
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Common Tolerance Mechanisms, but Distinct Cross-Reactivities Associated with gp41 and Lipids, Limit Production of HIV-1 Broad Neutralizing Antibodies 2F5 and 4E10
inferredcites →https://doi.org/10.4049/jimmunol.1301285openalex-snapshot
Immune Tolerance Negatively Regulates B Cells in Knock-In Mice Expressing Broadly Neutralizing HIV Antibody 4E10
inferredcites →https://doi.org/10.4049/jimmunol.172.11.6790openalex-snapshot
Characterization of the Human Ig Heavy Chain Antigen Binding Complementarity Determining Region 3 Using a Newly Developed Software Algorithm, JOINSOLVER
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.2139/ssrn.3416843openalex-extracted
Structural Basis for Broad HIV-1 Neutralization by a Novel MPER-Specific Human Broadly Neutralizing Antibody
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2023.108143openalex-snapshot
Application of germline antibody features to vaccine development, antibody discovery, antibody optimization and disease diagnosis
inferred← citeshttps://doi.org/10.1016/j.celrep.2017.07.050openalex-snapshot
Therapeutic Antibodies to Ganglioside GD2 Evolved from Highly Selective Germline Antibodies
inferred← citeshttps://doi.org/10.1016/j.celrep.2018.04.101openalex-snapshot
Conformational Plasticity in Broadly Neutralizing HIV-1 Antibodies Triggers Polyreactivity
inferred← citeshttps://doi.org/10.1016/j.chom.2019.09.016openalex-snapshot
Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01
inferred← citeshttps://doi.org/10.1016/j.immuni.2021.12.004openalex-snapshot
Analysis of antibody binding specificities in twin and SNP-genotyped cohorts reveals that antiviral antibody epitope selection is a heritable trait
inferred← citeshttps://doi.org/10.1016/j.immuni.2023.04.003openalex-snapshot
Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101622openalex-snapshot
Phage-DMS: A Comprehensive Method for Fine Mapping of Antibody Epitopes
inferred← citeshttps://doi.org/10.1016/j.it.2021.06.008openalex-snapshot
How can polyreactive antibodies conquer rapidly evolving viruses?
inferred← citeshttps://doi.org/10.1016/j.str.2016.06.012openalex-snapshot
Somatic Hypermutation-Induced Changes in the Structure and Dynamics of HIV-1 Broadly Neutralizing Antibodies
inferred← citeshttps://doi.org/10.1021/bk-2020-1346.ch002openalex-snapshot
Insights into Antibody-Carbohydrate Recognition from Neoglycoprotein Microarrays
inferred← citeshttps://doi.org/10.1038/s41467-019-08415-7openalex-snapshot
Selection of immunoglobulin elbow region mutations impacts interdomain conformational flexibility in HIV-1 broadly neutralizing antibodies
inferred← citeshttps://doi.org/10.1038/s41467-019-12973-1openalex-snapshot
An MPER antibody neutralizes HIV-1 using germline features shared among donors
inferred← citeshttps://doi.org/10.1038/s41596-018-0025-6openalex-snapshot
PhIP-Seq characterization of serum antibodies using oligonucleotide-encoded peptidomes
inferred← citeshttps://doi.org/10.1073/pnas.2011653118openalex-snapshot
Mutational fitness landscapes reveal genetic and structural improvement pathways for a vaccine-elicited HIV-1 broadly neutralizing antibody
inferred← citeshttps://doi.org/10.1097/pn9.0000000000000097openalex-snapshot
Integrating exposures and multi-omics in the Boston Birth Cohort to elucidate immune development across the life course: rationale and study design
inferred← citeshttps://doi.org/10.1101/2021.03.25.436790openalex-snapshot
Antiviral Antibody Epitope Selection is a Heritable Trait
inferred← citeshttps://doi.org/10.1101/285916openalex-snapshot
Improved Analysis of Phage ImmunoPrecipitation Sequencing (PhIP-Seq) Data Using a Z-score Algorithm
inferred← citeshttps://doi.org/10.1128/jvi.01102-24openalex-snapshot
Comprehensive phage display viral antibody profiling using VirScan: potential applications in chronic immune-mediated disease
inferred← citeshttps://doi.org/10.1128/jvi.01793-15openalex-snapshot
Structural and Thermodynamic Basis of Epitope Binding by Neutralizing and Nonneutralizing Forms of the Anti-HIV-1 Antibody 4E10
inferred← citeshttps://doi.org/10.1128/jvi.02935-15openalex-snapshot
The Broadly Neutralizing, Anti-HIV Antibody 4E10: an Open and Shut Case?
inferred← citeshttps://doi.org/10.1186/s12864-022-08869-yopenalex-snapshot
Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data
inferred← citeshttps://doi.org/10.3389/fimmu.2023.1170462openalex-snapshot
Effects of HLA single chain trimer design on peptide presentation and stability
inferred← citeshttps://doi.org/10.4049/jimmunol.2300136openalex-snapshot
Defining and Studying B Cell Receptor and TCR Interactions
inferred← citeshttps://doi.org/10.6084/m9.figshare.21130049openalex-snapshot
Additional file 1 of Detecting antibody reactivities in Phage ImmunoPrecipitation Sequencing data
inferred← citeshttps://doi.org/10.70675/215798eaz7f82z4e57za8eazf4453d37b8c8openalex-snapshot
Caractérisation des activités antivirales des anticorps anti-VIH-1 et anti-SARS-CoV-2
inferred← citeshttps://doi.org/10.7554/elife.13783openalex-snapshot
Structural basis for germline antibody recognition of HIV-1 immunogens
inferred← citeshttps://doi.org/10.7554/elife.33038openalex-snapshot
Role of framework mutations and antibody flexibility in the evolution of broadly neutralizing antibodies
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